BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922003
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29640.1 | Symbols: | Protein of unknown function, DUF584 |... 660 0.0
> AT1G29640.1 | Symbols: | Protein of unknown function, DUF584
| chr1:10355703-10356482 REVERSE LENGTH=780
Length=780
Score = 660 bits (357), Expect = 0.0
Identities = 430/465 (92%), Gaps = 5/465 (1%)
Strand=Plus/Plus
Query 1 AAAAACATCTGATTTCTTGAAAATGTTGGAGGAATTCGATGAATCTGAGATTATTTTCTC 60
|||||||| || |||||||||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 80 AAAAACATTTGTTTTCTTGAAAATGTCGGAAGAATTCGACGAATCTGAGATCATTTTCTC 139
Query 61 TGATAGTTACTATCCAG-TTCGCCGGCGGGAAGACGGGAACGAGAAAGAGAAT---CGTC 116
||| | ||||| ||| | |||||||||| |||||||| ||||||||||||||| ||||
Sbjct 140 TGACAATTACTTTCC-GATTCGCCGGCGAGAAGACGGTAACGAGAAAGAGAATAACCGTC 198
Query 117 CGGTGGGTTTCCGGGAAAACTCTGAGAGAGTGAGGAACAAGTCATCGAAACGGACTAAAA 176
|||||| |||||||||||| |||||||||||| ||||||||||||| | ||||| |||||
Sbjct 199 CGGTGGATTTCCGGGAAAATTCTGAGAGAGTGTGGAACAAGTCATCTAGACGGAGTAAAA 258
Query 177 CGACGACGTTGCCTTCAGCGGTGACGGCGTTTTCGAGTTCGCTTCCGGTGAATATACCGA 236
||||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 259 CGACGCCGTTGCCTTCAGCGGTGACGGCGTTTTCTAGTTCGCTTCCGGTTAACATACCGA 318
Query 237 TGCGGAGGTATTCAACGGAGGAGGAATATTCCGATGACGACGGAGGAAGGAGAATGATTC 296
|| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 319 TGAGGAGGTATTCGACGGAGGAGGAATATTCCGATGACGACGGAGGAAGGAAAATGATTC 378
Query 297 CGCCGCATTTGATAGTTGGACGGAGGATTGAAGGAGGTCAAATGGCGTTTTCCGTTTGTA 356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 379 CGCCGCATTTGATAGTTGGACGGAGGATGGAAGGAGGTCAAATGGCGTTTTCCGTTTGTA 438
Query 357 CAGGTAACGGAAGAACTCTTAAAGGACGAGATCTGAGCCGGGTTCGTAATTCGGTTCTCA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CAGGTAACGGAAGAACTCTTAAAGGACGAGATCTGAGCCGGGTTCGTAATTCGGTTCTCA 498
Query 417 AGTTAACCGGATTTTTGGAAGCTTGAATTTGGATTGGACCGGACT 461
| |||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 499 AATTAACCGGGTTTTTGGAAGCTTGAAATTGGATTAAACCGGACT 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5