BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922006
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29680.1 | Symbols: | Protein of unknown function (DUF1264)... 1146 0.0
> AT1G29680.1 | Symbols: | Protein of unknown function (DUF1264)
| chr1:10377790-10378961 REVERSE LENGTH=854
Length=854
Score = 1146 bits (620), Expect = 0.0
Identities = 708/752 (94%), Gaps = 0/752 (0%)
Strand=Plus/Plus
Query 3 AAGAAAAGAAAATCAAGGATGTCTTCGAGCGGCAGCGAAGATCAGGTGCCTCCTGGAGGT 62
||||||| ||||| ||||||| ||| ||||||| |||| |||||||| ||||||||||||
Sbjct 13 AAGAAAATAAAATTAAGGATGGCTTTGAGCGGCGGCGATGATCAGGTACCTCCTGGAGGT 72
Query 63 CCGGTGACGGTTTCAACACGTCTGATTGATGCCGGATCGACGATCATGCAGCGGCGATTA 122
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CCGATGACAGTTTCAACACGTCTGATTGATGCCGGATCGACGATCATGCAGCGGCGATTA 132
Query 123 CCGTTGAAGCAGATGAACACTCATGTCTCTACTTTTGCCATATATGGTTGTGACATGTCC 182
||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 133 CCGGTGAAGCAGATGAACACTCATGTCTCTACTTTTGCGATATATGGTGGTGACATGTCC 192
Query 183 CGGCAAATAGAGACTCACCACTACGTCCACCGCATCAACGACGAGTTCCTTCAGTGTGCT 242
|||| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 193 CGGCTAATAGGGACTCACCACTATGTCCACCGCGTCAACGACGAGTTCCTTCAGTGTGCT 252
Query 243 GTTTACGCCTCTGACCGTTCCGATGCACCTCTCATCGGAATTGAATATGTAATATCCCAC 302
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 253 GTTTACGCCTCTGACCGCTCCGATGCACCTCTAATCGGAATTGAATATGTAATATCCGAC 312
Query 303 CGATTATACGAAACTCTGTCTCAAGATGAGCAAAAGCTTTGGCACTCTCATGCTTACGAG 362
|||||||| |||||| ||||| | ||||||||||||||||||||||||||||| || |||
Sbjct 313 CGATTATATGAAACTTTGTCTGAGGATGAGCAAAAGCTTTGGCACTCTCATGCATATGAG 372
Query 363 GTTAAGTCAGGCTCGTGGGCTTATCCACGATTGCCTGAGGTTATGGCTGCTCCGGAGCTC 422
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 373 GTTAAGTCAGGCTCGTGGGCTTATCCACGATTGCCTGAGGTTGTGGCTGCTCCGGAGCTC 432
Query 423 AAGAACATAGCCAAAACGTACGGAAAGTTTTGGTGCACTTGGCAGATAGACCGAGGTGAC 482
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 433 AAGAACATAGCCAAAACGTACGGAAAGTTTTGGTGCACCTGGCAGATAGACCGAGGTGAC 492
Query 483 AAGTTACCAATGGGTGCACCCGAACTTATGATGTCACCTCAGGGGGTGGGGCAAGGGGTA 542
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 493 AAGTTACCAATGGGTGCACCCGAACTAATGATGTCACCTCAGGGGGTGGGGCAAGGGGTA 552
Query 543 TTAAGGCCAGAGGTGGTGAAGAGAAGAGATGAGAAGTACAACATTTCGACAGATGAATTG 602
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 553 CTAAGGCCAGAGTTGGTGAAGAGAAGAGATGAGAAGTACAACATTTCGACAGATGATTTG 612
Query 603 AAGCACAAGAGAGCGGAGATTGCTGAACCGGAGTGGATCAATCCAATGGCTGATTACTGG 662
|| |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 613 AAACACACGAGAGCGGAGATTGCTGAACCGGAGTGGATCAATCCGATGGCTGACTACTGG 672
Query 663 AAGCAACATGGTAAGTGTTTTGTACTCGATGTCGTGACTGTTGAAATGAACCGTAATGCG 722
|||||||||||||||||||||||||||||| | | |||||| |||||||||||| | |||
Sbjct 673 AAGCAACATGGTAAGTGTTTTGTACTCGATATTGCGACTGTCGAAATGAACCGTCACGCG 732
Query 723 CAATACCCGTGAACAATGTCCTCTCGTTGCTC 754
|||| |||||||||||||||||||| | ||||
Sbjct 733 CAATTCCCGTGAACAATGTCCTCTCATGGCTC 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5