BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922010
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1923 0.0
> AT1G29710.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:10387673-10389100 FORWARD LENGTH=1428
Length=1428
Score = 1923 bits (1041), Expect = 0.0
Identities = 1302/1429 (91%), Gaps = 14/1429 (1%)
Strand=Plus/Plus
Query 21 ATGGTGCGATTGTGGTGTGGAAAGCTCAAACTTTCGAAACCCTTTTTAGCGTTAGCAACA 80
|||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||| |||
Sbjct 1 ATGGTGCGATTGTGGTGTGGGAAGCTCAGACTTTGGAAACCCTATTTAGCGTTAGCTACA 60
Query 81 CAGAGTAGAAGCCGCTGGTTCAGTTC--G-CGTGGAGCTCCCTCTCATCAGCATGACAGC 137
|||||||||| | |||||||| |||| | ||||||||||||||||||| | | ||| |
Sbjct 61 CAGAGTAGAAACAGCTGGTTCTGTTCGGGTGGTGGAGCTCCCTCTCATCATCTTCACATC 120
Query 138 CTCACATACTAT-G--G--C--AGA--ACAGAGATAATCAATCGGCT-TGAGCGATACAT 187
|||| | | ||| | | | ||| |||||||| ||||||||| | | ||||| || |
Sbjct 121 CTCAAAAAGTATGGCAGCTCAGAGATCACAGAGATGATCAATCGG-TATAAGCGAAACGT 179
Query 188 AACCGAACGCACATGGACGCAGAATCCAATCGTAGGTCAGTACAAAACAACAGTTTCTCC 247
| ||| || ||||| |||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 180 AGCCGGACACACATTGACGCAGAATTCAATGGTAGGTCAGTACAAAACAACAGTTTCTCC 239
Query 248 AAGTGTTGCTCAAAATGTTACTATTGAGACATTTGATTCGTTATGTAATCAAGGGAATTG 307
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 AAGTGTTGCTCAAAATGTTACTATTGAGACATTTGATTCGTTATGTATTCAAGGGAATTG 299
Query 308 GAGAGAAGCTGTAGAGGTTTTAGATTACTTGGAGAATAAGGGTTTTGCTATGGATTTGAT 367
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GAGAGAAGCTGTAGAGGTTTTAGATTACTTGGAGAATAAGGGTTATGCTATGGATTTGAT 359
Query 368 TAGACTCTTAAGGTTAGCTAAAATATGCGGTGAACCAGAAGCTTTGGAAGCAGCTAGAGT 427
|||||| ||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 360 TAGACTTTTAGGGTTAGCTAAACTATGTGGTAAACCAGAAGCTTTGGAAGCAGCTAGAGT 419
Query 428 TGTTCATGAGTGTATTATTGCTCTGGTTTCTCCTTGTGATGTTGGTTCTCGTAACGCGAT 487
||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 420 TGTTCATGAGTGTATCATTGCTCTGGTTTCTCCTTGTGATGTTGGCGCTCGAAACGCGAT 479
Query 488 TATCAAGATGTATTCTTGTTGCGGATCTGTTGATCATGCGCTCAAAGTGTTCGACGAAAT 547
|||| ||||||||||| |||| | ||||||||| |||||||||| |||||||| |||||
Sbjct 480 TATCGAGATGTATTCTGGTTGTTGTTCTGTTGATGATGCGCTCAAGGTGTTCGAAGAAAT 539
Query 548 GCCTAAGAGGAATTCGGAGACTTGGTGTGTTATGATGACGTGTTTTGTTAACAATGGATT 607
|||| || ||||||||| ||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 540 GCCTGAGTGGAATTCGGGGACTTTGTGTGTTATGATGAGGTGTTTTGTTAACAACGGATA 599
Query 608 TGGTGAAGAAGCAATCAATTTGTTTACTCGTTTTAAAGAAGAAGGGAACAAACCAGACGG 667
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 TGGTGAAGAAGCAATTGATTTGTTTACTCGTTTTAAAGAAGAAGGGAACAAACCAAACGG 659
Query 668 AGAGATATTCAACCAAGTGTTATCTACGTGTACTTTGACAGGAGATCTTAAGGAAGGATC 727
||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||
Sbjct 660 AGAGATATTCAACCAAGTGTTTTCTACATGTACTTTGACAGGAGATGTTAAGGAAGGGTC 719
Query 728 ACTGCAATTTGAAGCTATGAACAGAGAATATGGAATCATACCTTCAATGGAACACTACCA 787
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 720 TCTGCAATTTCAAGCTATGTACAGAGAATATGGAATCGTACCTTCAATGGAACACTATCA 779
Query 788 TAGTGTTACCAAGATGTTTGCAACATCTGGTCACTTGGATGAAGCACTAAACTTTGTTGA 847
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 780 TAGTGTTACCAAAATGTTGGCAACATCTGGTCACTTGGATGAGGCACTGAACTTTGTTGA 839
Query 848 GAGAATGCCGATGGAACCGAGTGTTGATGTTTGGGAAACACTAATGAATCTTTCTCGCGT 907
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 840 GAGAATGCCGATGGAACCGAGTGTTGACGTGTGGGAAACACTAATGAATCTTTCTCGGGT 899
Query 908 TCATGGAGATGTAGAGCTTGGAGATAGATGTGCTGAGTTAGTTGAGAAGCTAGATGCTAC 967
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 900 TCATGGAGATGTAGAGCTTGGAGATAGATGTGCTGAGTTGGTTGAGAAGTTAGATGCCAC 959
Query 968 AAGATTGGACAAAGTGTCAAGTGCAGGTCTTGTAGTAACCAAAGCATCAGACAATGTGAA 1027
|||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 960 AAGATTAGACAAAGTGTCAAGTGCAGGTCTTGTAGCAACCAAAGCATCAGACTTTGTGAA 1019
Query 1028 GAAGGAACCGAGCAATCGGTCTGAACCATATTGGTGTTATAATTTTAGGCCGGTAGATAC 1087
||||||||| |||| ||||||||||||||||| | || || |||||| ||||||||| |
Sbjct 1020 GAAGGAACCAAGCACTCGGTCTGAACCATATTTTTATTCTACTTTTAGACCGGTAGATTC 1079
Query 1088 TTCACATCCACAAATGAATATTATTTACGAGACACTAATGAGCCTGAGGTCACAAATGAA 1147
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 1080 TTCACATCCACAAATGAATATCATTTACGAGACACTAATGAGTTTGAGGTCACAACTGAA 1139
Query 1148 AGAAATGGGTTATGTTCCTGACACTAGGTTTTATCGTACTTTGATCATGGTGATGGGGAA 1207
||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||| |||
Sbjct 1140 AGAAATGGGTTATGTTCCTGACACTAGGTATTATCGTAGTTTAATCATGGCGATGGAGAA 1199
Query 1208 TAAAGAACAGGTTTTTGGTTACAGAGAGGAAATCGCAGTTGTTGAAAGTCTTCTTAAGTC 1267
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1200 TAAAGAACAGATTTTTGGTTACAGAGAGGAAATTGCAGTTGTTGAAAGTCTTCTTAAGTC 1259
Query 1268 AAAGCCTCGATCTTCAATCACTCTGATAACTAATGTTCGTATTGTTGGGGATTGCCACAA 1327
||||||||||||| ||||||||||| |||||||| | || |||||||| |||||||| |
Sbjct 1260 AAAGCCTCGATCTGCAATCACTCTGTTAACTAATATACGCATTGTTGGCGATTGCCATGA 1319
Query 1328 TATGATGAAGTTGATGTCAGTCATAACTGGCAGAGATCTGTTTAAGCGAGATGCACAGAG 1387
||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1320 TATGATGAAGTTGATGTCAGTCATAACTGGCAGAGATATGATTAAGCGAGATGCAAAGAT 1379
Query 1388 ATACCACTTGTTCAAAAATGGCGTCTGCCGGTGCAACGATCGCTGGTGA 1436
||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1380 ATACCACTTGTTCAAAAATGGCGTCTGCCGGTGCAACAATCTTTGGTGA 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5