BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922016
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29760.1 | Symbols: | Putative adipose-regulatory protein (... 2292 0.0
AT2G34380.1 | Symbols: | Putative adipose-regulatory protein (... 523 2e-147
> AT1G29760.1 | Symbols: | Putative adipose-regulatory protein
(Seipin) | chr1:10422331-10424327 FORWARD LENGTH=1842
Length=1842
Score = 2292 bits (1241), Expect = 0.0
Identities = 1533/1663 (92%), Gaps = 63/1663 (4%)
Strand=Plus/Plus
Query 1 TCTTCTTCTGGGTTATCAT---CATCAATGGAGTCCGACTCCGAGTCCGACTCTTCATCA 57
||||||||||||||||||| |||||||||| ||||| ||||||||||| ||| |
Sbjct 24 TCTTCTTCTGGGTTATCATCACCATCAATGGACTCCGAGTCCGAGTCCGA---GTCA--A 78
Query 58 AGCCCTAGCACCACCGAAGAATTCGATCGATTCCTTAACGCTCCTGACGAGTTTTACTAC 117
| |||||||||||| || ||||||||||||||||| |||| |||||||| |||||||||
Sbjct 79 A-CCCTAGCACCACGGACGAATTCGATCGATTCCTCGACGCACCTGACGAATTTTACTAC 137
Query 118 GATTGCTTGCCGATTCGTTCCAATTCCCACCGTCAACATTCGTCTCTCTTACGGCGGCGA 177
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 138 GATTGCTTACCGATTCGTTCCAATTCCCA---TCAACCTTCGTCTCTCTTACGGCGGCGA 194
Query 178 AAGCCGGCACATCGCCGGG-----A-TT--T--G--ATTGAAACGGAGCCGTCTTCTTCT 225
||| ||||||||||||||| | || | | |||||||||||||| |||||||||
Sbjct 195 AAGTCGGCACATCGCCGGGATTTAATTTCGTCCGATATTGAAACGGAGCCATCTTCTTCT 254
Query 226 TCCGATGGATTTGAAGTCGGTGAGAAATCGAGCTATGTGGAAAAGAACGAC-GAGCTTA- 283
|||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 255 TCCGATGGATTTGATGTCGGTGAGAAATCCAGCTATGTGGAAAAGAACG-CTGAGCTTAG 313
Query 284 ATGGGGATTTTGAAACAAGCGACGTAATTGAATCAACCAAGGACCCAATTGCTCTATCTT 343
| |||||| |||| ||||||||||||||||||||||| |||||| |||||| ||||||||
Sbjct 314 A-GGGGATATTGATACAAGCGACGTAATTGAATCAACTAAGGACTCAATTGATCTATCTT 372
Query 344 CAGAAAAAGAGAACGATTTGGATGTAATTGA-TTCTTCTGGAGAGGATAAAGGGAGAGAT 402
||||||| ||||||||||||||||||||| | ||| ||||| || || |||
Sbjct 373 CAGAAAAGGAGAACGATTTGGATGTAATT-AGTTCGTCTGG-GA--AT---------GAT 419
Query 403 ATGGATGTAATTGTTTCGGTTCAGG-ACCGGGTTGACCCGTTTCAGGAAGAATCCACGGT 461
||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 420 ATGGATGTAATTGATTCGGGTC-GGAACCGGGTTGACCCGTTTCAGGAAGAATCCACGGT 478
Query 462 GACCACCGTGAGCGGCGATGAACGAGGAGACGACG----CG--GGATCCGTACCACAGCT 515
||| ||||||||| ||||||| | ||||||||||| || ||||| ||||||||| |
Sbjct 479 GACTACCGTGAGCAGCGATGATCAAGGAGACGACGACTACGCCGGATCGGTACCACAG-T 537
Query 516 TT-GGGAACCACCTAATTCCACTGAGTGGTCTCTTTTTGGGTTTTTGGTTGGGCTAGTGA 574
|| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 TTCGGGAGCCACCTAATTCCACTGAGTGGTCTCTCCTTGGGTTTTTGGTTGGGCTAGTGA 597
Query 575 TCAAAGCAATCGAATTTCAAGTCAGTTTGATGACAAGCTTACTCACATTTCCTCCATGG- 633
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 TCAAAGCAATCGAATTTCAAGTCAGTTTCATGACAAGCTTACTCACATTTCCTCCATGGC 657
Query 634 TTGCTCCGTTACTGTTTTCTCTTCTTTTTTGATCCCTTTAGCACAATTAGGTTTGGCAGA 693
|| |||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 658 TT-CTCCGTAACTGTTTTCTCTTCTTTTTCGATCCCTTTAGCACGATTAGGTTTGGCAGA 716
Query 694 CGCTTTCTAATGGCAAGAGTTGCAGGGATAAGTGATATGATCTTTGGTAATATGAATCCA 753
|||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 717 CGCTTTTTAATGGCAAGAGTAGCAGGAATAAGTGATATGATCTTTGGTTATATGAATCCT 776
Query 754 TTTAGGTTAAACGATACCAAACAAATGTTGAGTATTGTGTGCAAATTTGGTTGGGGTATG 813
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 777 TTTAGGTTAAAAGATACAAAACAAATGTTGAGTATTGTGTGCAAGTTTGGTTGGGGTATG 836
Query 814 TTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTCGTCCCTTATGATT 873
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 837 TTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTCGTCGCTTATGATT 896
Query 874 GGTGGTTATGTGATAAACCGTATAGCGGATAAACCATTTGAGGTCAAGGAGACCTTGAAT 933
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGTGGTTATGTGATTAACCGTATAGCGGATAAACCATTTGAGGTCAAGGAGACCTTGAAT 956
Query 934 TTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATAACCTCGTGTGCTGGTGTT 993
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 TTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATATCCTCGTGTGCTGGTGTT 1016
Query 994 GATTGTGAGGGAAGTTGCAAGGAAAGTAATGAAATGTCGAAGATCAGAGGCTTGCGAGTT 1053
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1017 GAATGTGAGGGAAGTTGCAAGGAAAGTAATGAAATGTCGAAGATCAGGGGTTTGCGAGTT 1076
Query 1054 ATCCCTCGAGACCAGAAGTTAAATATCATTCTTTCAATGACATTACCTGAGTCTGCGTAC 1113
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ATCCCTCGAGACCAGAAGTTAGATATCATTCTTTCAATGACATTACCTGAGTCTGCGTAC 1136
Query 1114 AATAAAAATCTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATCTGTGGATGGTCAAACG 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AATAAAAATCTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATCTGTGGATGGTCAAACG 1196
Query 1174 ATTGCTAGTATAAGGCGTCCGTGCATGCTAAGATTCAGAAGCGAGCCTATCCGTCTTGTT 1233
||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 1197 ATTGCTAGTATAAGGCGTCCGTGCATGTTAAGATTCAGAAGTGAGCCTATTCGTCTTGTT 1256
Query 1234 CAGACATTCTTCAAAATGGTTCCGTTAGTGACAGGATATGTCTCTGAGATCCAAACTTTG 1293
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1257 CAGACATTCTTCAAAGTGGTTCCGTTAGTGACAGGATATGTCTCTGAGATCCAAACCTTG 1316
Query 1294 AGCTTGAAGTTGAAAGGCTTTGTAGAAAAGGAAATTCCCACTGCTTGCTTAAAGATAATT 1353
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1317 AGCTTGAAGTTGAAAGGCTTTGTAGAAAAGGACATTCCCACTGCTTGCTTAAAGATAATA 1376
Query 1354 ATTGAACAACGGGCAGAATTTCGACCCGGAGCAGGTATTCCAGAGCTGTACGATGCATCC 1413
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATCGAACAACGGGCAGAATTTCGACCCGGAGCAGGTATTCCAGAGCTGTACGATGCATCC 1436
Query 1414 CTGTCGGTTGAATCCGGTCTTCCCTTCTTCAGAAAAGTTATATGGAAATGGCGGAAAACT 1473
|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1437 CTATCGGTTGAATCCGGTCTTCCCTTCTTCAGAAAAATTATATGGAAATGGCGGAAGACT 1496
Query 1474 TTGTTCGTCTGGATCAGCATGAGTTTGTTCATTACGGAATTGCTTTTCACGTTGGTTTGT 1533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTGTTCGTCTGGATCAGCATGAGTTTGTTCATTACGGAATTGCTTTTCACGTTGGTTTGT 1556
Query 1534 TGCAGTCCTCTTATCATCCCAAGAAGACGACCTAGAGACAGTTCGCCTTCAAACCC---- 1589
|| || ||||||||||||||||||| || |||||||||||| ||||||||||||||
Sbjct 1557 TGTAGACCTCTTATCATCCCAAGAACACAACCTAGAGACAGATCGCCTTCAAACCCAACT 1616
Query 1590 G-A--CTGGAGGTAGATTATGAATCAAC-GATTACTGTACATC 1628
| | ||||||||||||||||||||||| | ||||||||||||
Sbjct 1617 GGAGTCTGGAGGTAGATTATGAATCAACAG-TTACTGTACATC 1658
> AT2G34380.1 | Symbols: | Putative adipose-regulatory protein
(Seipin) | chr2:14512707-14514516 FORWARD LENGTH=1810
Length=1810
Score = 523 bits (283), Expect = 2e-147
Identities = 618/773 (80%), Gaps = 50/773 (6%)
Strand=Plus/Plus
Query 805 TGGGGTATGTTTTGGGCTGTTTATGTAGGCATTGTGTTGTTTGGCTTGTTGGTTTCGT-C 863
|||||| ||||||| ||||||||||| || || ||||||||| |||||||||||| | |
Sbjct 776 TGGGGTTTGTTTTGTGCTGTTTATGTGGGGATCATGTTGTTTGCCTTGTTGGTTTC-TGC 834
Query 864 CCTTATGATTGGTGGTTATGTGATAAACCGTA--TAGCGGATAAACCATTTGAGGTCAAG 921
|||||||| |||||| |||||| ||| || | || || ||||| ||| ||||
Sbjct 835 GTTTATGATTAGTGGTTTTGTGAT-TACC-TATTTGGCTCATGAACCACTTGTTATCAAA 892
Query 922 GAGACCTTGAATTTTGATTACACCAAGAATAGTCCAGAAGCATATGTGCCCATAACCTCG 981
|||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||
Sbjct 893 GAGAGCTTGAATTTTGATTACACCAAGAGTAGTCCTGAAGCTTATGTGCCCATAAGTTCA 952
Query 982 TGTGCTGGTGTTG--ATTGTGAGGGAAGTTGCAAGGAAAGTAATGAAA-TGTCGAAGATC 1038
||||||||||||| ||| | | ||| ||||||| |||| ||||| || |||| ||
Sbjct 953 TGTGCTGGTGTTGCCTTTG-GTTTG-AGTGGCAAGGAGAGTATTGAAACTG-GGAAGGTC 1009
Query 1039 AGAGGCTTGCGAGTTATCCCTCGAGACCAGAAGTTAAATATCATTCTTTCAATGACATTA 1098
| ||| ||| || | | | || ||| || ||| | | | |||||||||||
Sbjct 1010 AAAGGGTTGAAAG--A---C-AG-GA-CAG-AG----ATA--ACTGTGTCAATGACATTG 1054
Query 1099 CCTGAGTCTGCGTACAATAAAAATCTCGGCATGTTTCAGGTTCGGGTGGACTTCTTATCT 1158
|||||||| | |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1055 CCTGAGTCCGAGTACAATAGAAATCTCGGGATGTTTCAGGTTCGGGTGGACTTCTTATCC 1114
Query 1159 GTG-GATGGTCAAACGATTGCTAGTAT-AAGGCGTCCGTGCATGCTAAGATTCAGAAGCG 1216
| | | |||||| | |||||||| | |||||| ||||| ||| ||| ||| || ||||
Sbjct 1115 GCGAG-TGGTCATGTGCTTGCTAGT-TCAAGGCGGCCGTGTATGGTAAAATTTAGTAGCG 1172
Query 1217 AGCCTATCCGTCTTGTTCAGACATT-CTTCAAA-ATGGTTCCG-TTAGTGACAGGATATG 1273
||||||| |||||||| ||||| || || ||| || | |||| || || || || ||||
Sbjct 1173 AGCCTATACGTCTTGTCCAGACTTTGCT--AAAGATTGCTCCGCTT-GTCACGGGCTATG 1229
Query 1274 TCTCTGAGATCCAAACTTTGAGCTTGAAG-TTGAAAGGCTTTGTAGAAAAGGA-A--ATT 1329
||||||| |||||||| |||| ||||||| || |||||||| || |||||||| | |||
Sbjct 1230 TCTCTGAAATCCAAACCTTGAACTTGAAGCTT-AAAGGCTTGGTCGAAAAGGACATTATT 1288
Query 1330 CCCACTGCTTGCTTAAAGATAATTATTGAACAACGGGCAGAATTTCGACCCGGAGCAGGT 1389
|| ||||||||||| ||||| || || |||||||| ||||| ||||| || |||||||||
Sbjct 1289 CCTACTGCTTGCTTGAAGATCATGATCGAACAACGTGCAGAGTTTCGTCCTGGAGCAGGT 1348
Query 1390 ATTCCAGAGCTGTACGATGCATCCCTGT-CGGTTGAATCCGGTCTTCCCTTCTTCAGAAA 1448
||||| ||| | ||||||||||| |||| | |||||||| ||||| ||||| ||||
Sbjct 1349 ATTCCTGAGATTTACGATGCATCTCTGTTCC-TTGAATCCAAACTTCCTTTCTT--GAAA 1405
Query 1449 AGT-T-ATATGGAAATGGCGGAAAACTTTGTTCGTCTGGATCAGCATGAGTTTGTTCATT 1506
|| | |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1406 AGGATCATATGGAACTGGAGGAAAACTTTGTTTGTCTGGATCAGCATGAGTTTGTTCATT 1465
Query 1507 ACGGAATTGCTTTTCACGTTGGTTTG-TTGCAGTCCTCTTATCATCCCAAGAA 1558
| |||||| |||||| | || |||| || ||| ||||| |||||||||||||
Sbjct 1466 ATGGAATTACTTTTCGCCTTAGTTTTCTT-CAGACCTCTGATCATCCCAAGAA 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5