BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922029
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
AT1G29880.1 | Symbols: | glycyl-tRNA synthetase / glycine--tRN... 1085 0.0
AT1G29870.1 | Symbols: | tRNA synthetase class II (G, H, P and... 684 0.0
> AT1G29880.1 | Symbols: | glycyl-tRNA synthetase / glycine--tRNA
ligase | chr1:10459478-10462801 REVERSE LENGTH=2394
Length=2394
Score = 1085 bits (587), Expect = 0.0
Identities = 816/927 (88%), Gaps = 14/927 (2%)
Strand=Plus/Plus
Query 269 CATTTCGTTCGTGAGGAGAAGATGCTGGAAATTGAATG-CACATGTGTGACACCAGAGGT 327
|||||| ||| ||||||||| ||||| ||| |||| || | |||||||||||||||||||
Sbjct 510 CATTTCATTCTTGAGGAGAACATGCTAGAAGTTGATTGTC-CATGTGTGACACCAGAGGT 568
Query 328 TGTTCTCAAGGCATCTGGTCATGTTGATAAGTTCACTGATGTCATGGTCAAGGATGTGAC 387
|||||||||||||||||| ||||| ||||||||||||||| | ||||| ||||||| ||
Sbjct 569 TGTTCTCAAGGCATCTGGGCATGTAGATAAGTTCACTGATCTTATGGTTAAGGATGAGAA 628
Query 388 TACTGGATCATATTACCGTGCTGACCACTTGGTCAAAGATTATTGCAACGAGAAGCTGGA 447
|||||| ||| ||||||||||||||||||| |||| |||||||| | ||||||||||||
Sbjct 629 AACTGGAACATGTTACCGTGCTGACCACTTGCTCAAGGATTATTGTACCGAGAAGCTGGA 688
Query 448 GAAAGATGTTACCATCTCTGCTGAGAAAGCTGCTGAATTAAAGGATCTTCTCGTTGTTTT 507
||||||| ||||||||||||||||||||||||||||||| |||||| |||| | |||| |
Sbjct 689 GAAAGATCTTACCATCTCTGCTGAGAAAGCTGCTGAATTGAAGGATGTTCTTGCTGTTAT 748
Query 508 GGAAAATCTTTCTATTGAAGATCTTGGAAAGAAGATCAAAGAGTATGGGATCACTGCTCC 567
|||| || ||||| |||| | || || ||||||| ||||||||||||||||||||
Sbjct 749 GGAAGATTTTTCTCCTGAACAGCTAGGTGCCAAGATCAGGGAGTATGGGATCACTGCTCC 808
Query 568 AGACACTAAGAATCCACTCTCTGATCCTTACCCGTTCAACTTGATGTTTAAAACATCCAT 627
|||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 809 AGACACGAAGAATCCACTCTCTGATCCTTACCCGTTTAATTTGATGTTTCAAACATCCAT 868
Query 628 TGGCCCGTCTGGTCAGCATAC-TGGTTACATGCGTCCTGAAACGGCACAAGGCATTTTT- 685
|||||| |||||| | || | ||||||||||||||||||||| || ||||| ||||||
Sbjct 869 TGGCCCATCTGGTTTG-ATTCCTGGTTACATGCGTCCTGAAACTGCTCAAGGTATTTTTG 927
Query 686 TGCAACTTTAATGAGTTGTA-TAGATATAATGGGAAGAAACTTCCCTTTGCCGCGGTTCA 744
| ||||||||| || ||||| || || ||||||||||||||||| |||||||||| |||
Sbjct 928 T-CAACTTTAAGGACTTGTACTAT-TACAATGGGAAGAAACTTCCTTTTGCCGCGGCTCA 985
Query 745 AGTTGGTCAAGCCTTCAGGAACGAGATATCTCCACGTCAAGGGCCTCTTAGAGTTCGTGA 804
| ||||||||||||| || || ||||||||||| || ||||||| |||||||||||||||
Sbjct 986 AATTGGTCAAGCCTTTAGAAATGAGATATCTCCTCGACAAGGGCTTCTTAGAGTTCGTGA 1045
Query 805 ATTCACTCTGGCAGAAATTGAGCACTTCATCCACCCTGGGAATAAGTCACATCCTAAATT 864
|||||| |||||||| |||||||||||| | | |||| |||||||||||||||||| ||
Sbjct 1046 ATTCACGCTGGCAGAGATTGAGCACTTCGTTGATCCTGAGAATAAGTCACATCCTAAGTT 1105
Query 865 CTC--ACGTGTAGCAAAACTGGAATTCCTTATGTTTCCAAGAGAGGAGCAAGTGTCTGGC 922
||| |||| ||||||| |||||||||||||||| ||||| || || ||| ||||||||
Sbjct 1106 CTCTGACGT--AGCAAAATTGGAATTCCTTATGTTCCCAAGGGAAGAACAAATGTCTGGC 1163
Query 923 CAATCTGC-AACAAAACTTTGCCTTGGTGAAGCTGTTGCCAAGGGAACTGTGAACAACGA 981
|||||||| || ||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct 1164 CAATCTGCCAA-AAAACTTTGCCTTGGTGAAGCTGTTGCTAAAGGTACTGTGAACAATGA 1222
Query 982 AACTCTAGGCTACTTCATTGGGAGAGTGTATCTTTTCCTTACCCGTCTTGGCATAGACAA 1041
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1223 AACTCTAGGATACTTCATTGGGAGAGTGTATCTTTTCCTTACTCGTCTTGGCATTGACAA 1282
Query 1042 GGATCGGTTGCGTTTCCGCCAGCATCTAGCAAATGAAATGGCCCACTATGCAGTAGATTG 1101
||| ||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1283 GGAACGGCTGCGCTTCCGTCAGCATCTAGCAAATGAAATGGCCCACTATGCAGCAGATTG 1342
Query 1102 CTGGGATGCTGAAATTGAGACTTCATATGGGTGGATTGAATGTGTTGGGATAGCAGATAG 1161
||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 1343 TTGGGATGCTGAAATTGAAAGTTCATATGGGTGGATTGAATGTGTTGGGATTGCAGATAG 1402
Query 1162 GGCAGCATACGACTTGCGTGCTCACTC 1188
| | || |||||||| |||||||||||
Sbjct 1403 GTCTGCTTACGACTTACGTGCTCACTC 1429
Score = 488 bits (264), Expect = 7e-137
Identities = 392/454 (86%), Gaps = 8/454 (2%)
Strand=Plus/Plus
Query 1196 GTGACCATCCAGAAGAATATGGTGTCAATCTCAAAGGAGAAGAAGAAAGTGTACCAG-GG 1254
|||| |||| |||| || |||||||| || ||||||||||||||||||| | ||||| ||
Sbjct 1662 GTGAACATCAAGAAAAACATGGTGTCTATATCAAAGGAGAAGAAGAAAGAGCACCAGCGG 1721
Query 1255 GTCTTTCACTTCGTCAGTGATTGAACCATCGTTTGGGATTGGTCGGATCGTGTATTGTCT 1314
|| ||||||| | |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1722 GT-TTTCACTCCATCAGTGATTGAACCATCGTTTGGGATTGGTCGGATCATATATTGTCT 1780
Query 1315 GTGCGAGCATTGTTTCAGCACAATGCCAAGCAAAGCAGGGGATGAACAGTTGAACGTGTT 1374
|| ||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct 1781 GTATGAGCATTGTTTCAGCACAAGGCCAAGCAAAGCAGGGGATGAGCAGTTGAACTTGTT 1840
Query 1375 CCGTTTCCCTCCTCTTGTTGCTCCCAAGATGTGCATGGTTTTCCCGCTTGTGAAAAACCA 1434
|||||||||||||||||| ||||||| | ||||| ||||||||||||||| | |||||
Sbjct 1841 CCGTTTCCCTCCTCTTGTAGCTCCCATCAAGTGCACGGTTTTCCCGCTTGTTCAGAACCA 1900
Query 1435 ACAATTCGAGG-AGACAACCAGACTCATTTCCGAGGAACTCACTTCCTGTC-GCATCGAT 1492
||||||||||| || | ||| | | |||||| |||||||| | | ||||| | |||
Sbjct 1901 ACAATTCGAGGAAG-TAGCCAAAGTTATTTCCAAGGAACTCGCCT-CTGTCGGTATCTCC 1958
Query 1493 CACGATATTGACATGAAAGGTATATCGATAGGTAAGAGATACGTGA-AATCTGATGAGCT 1551
|| | |||||||| | |||| ||||||||| |||||||| | || || | ||||||||
Sbjct 1959 CATAAGATTGACATCACTGGTACATCGATAGGGAAGAGATATGCGAGAA-CCGATGAGCT 2017
Query 1552 TGGAGTGCCATTTGCAATAACAGTGGACTCAGAAACACCAGTCACAATCAGAGAAAGAGA 1611
|||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||
Sbjct 2018 TGGAGTGCCATTTGCAATAACAGTGGACTCGGATACATCAGTGACAATCAGAGAAAGAGA 2077
Query 1612 CAGCAAAGATCAAGTCCGAGTCAGCTTGAAAGAG 1645
||||||||||||||||||||||| |||||| |||
Sbjct 2078 CAGCAAAGATCAAGTCCGAGTCACCTTGAAGGAG 2111
> AT1G29870.1 | Symbols: | tRNA synthetase class II (G, H, P and
S) family protein | chr1:10456902-10458782 REVERSE LENGTH=1392
Length=1392
Score = 684 bits (370), Expect = 0.0
Identities = 739/912 (81%), Gaps = 45/912 (5%)
Strand=Plus/Plus
Query 315 TGACACCAGAGGTTGTTCTCAAGGCATCTGGTCATGTTGATAAGTTCACTGATGTCATGG 374
|||||||||||| ||| |||| |||||||| ||||| | |||||||||||| | ||||
Sbjct 368 TGACACCAGAGGCCGTTTTCAACGCATCTGGGCATGTAAAAAAGTTCACTGATCTTATGG 427
Query 375 TCAAGGATGTGACTA-CTGGATCATATT-ACCGTGCTGACCACTTGGTC-AAAGATTATT 431
||||||||| | || |||| ||| || ||||||| |||||||||||| |||| |||||
Sbjct 428 TCAAGGATGAG-GTAGATGGAGCAT-TTCACCGTGCGGACCACTTGGTCAAAAG-TTATT 484
Query 432 GCAACGAGAAGCTG-GAGAAAGATGTTACCATCTCTGCTGAGAAAGCTGCTGAATTAAAG 490
| || || | | |||||||| |||||||||||||||||| ||||||||||| |
Sbjct 485 G---TGA-AAACCGAAAGAAAGATCCTACCATCTCTGCTGAGAATGCTGCTGAATTGGAT 540
Query 491 GATCTTCTCGTTGTTTTGGAAAATCTTTCTATTGAAGATCTTGGAAAGAAGATCAAAGAG 550
| || | | | | ||||| |||||||| |||||| ||||| | || | | ||
Sbjct 541 AAAGTTATAGCTCATGTGGAAGATCTTTCTGCTGAAGAGCTTGG--TGGAG-T-ATGGAA 596
Query 551 T-ATGGGAT-CACTGCTCCAGACACTAAGAATCCACTCTCTGATCCT--T-ACCCGTTCA 605
| | | | ||| ||||||| ||| ||||||||||| ||| ||||| | ||| ||||
Sbjct 597 TCA-CTGCTCCACAGCTCCAGTCACGAAGAATCCACTTTCTCATCCTCCTCGCCCCTTCA 655
Query 606 ACTTGATGTTTAAAACATCCATTGGCCCGTCTGG-TCAGCAT-ACT-GGTTACATGCGTC 662
||||||||||| |||| ||| |||| | ||| || | | | | |||||| ||||||
Sbjct 656 ACTTGATGTTTCAAACTTCCTTTGGAGCAAGTGGTTC-G-TTGA-TAGGTTACTTGCGTC 712
Query 663 CTGAAACGGCACAAGGCATTTTTTGCAACTTTAATGAGTT-GTATAGATAT-AATGGGAA 720
||||||| || ||||||| |||||||||||| || || || |||| || | |||||| |
Sbjct 713 CTGAAACTGCTCAAGGCAGTTTTTGCAACTTCAAGGA-TTATTATA-ATTTGAATGGG-A 769
Query 721 G-AAACTTCCCTTTGCCGCGGTTCAAGTTGGTCAAGCCTTCAGGAACGAGATATCTCCAC 779
| |||||||| ||||||| || ||||||||||| || ||| ||||| |||||||||||||
Sbjct 770 GAAAACTTCCGTTTGCCGTGGCTCAAGTTGGTCGAGTCTTTAGGAATGAGATATCTCCAC 829
Query 780 GTCAAGGGCCTCTTAGAGTTCGTGAATTCACTCTGGCAGAAATTGAGCACTTCATCCACC 839
||||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 830 GTCAAGGGCTTCTTAGAACTCGTGAATTCACTCTGGCAGAAATTGAGCACTTTGTTCACC 889
Query 840 CTGGGAATAAGTCACATCCTAAATTCTCACG-TGTAGCAAAACTGGAATTCCTTATGTTT 898
||| | ||||||||||| |||| ||||| | |||||||||||| ||| |||||||||||
Sbjct 890 CTGAGCATAAGTCACATTCTAAGTTCTCT-GATGTAGCAAAACTTGAACTCCTTATGTTT 948
Query 899 CCAAGAGAGGAGCAAGTGT--C-TGGCCAATCTGCAACAAA-ACTTTGCCTTGGTGAAGC 954
|||||||| || |||| | |||||||| ||||| ||| |||||||||||| |||||
Sbjct 949 CCAAGAGAAGAACAAGAAAAACCTGGCCAATTTGCAA-AAAGACTTTGCCTTGGCGAAGC 1007
Query 955 TGTTGCCAAGGGA-ACTGTGAACAACGAAACTCTAGGCTACTTCATTGGGAGAGTGTATC 1013
|||||| ||||| | |||||||| || |||||||| | ||||||||||||||||||||
Sbjct 1008 TGTTGCTAAGGGGCA-TGTGAACAGTGAGACTCTAGGATTCTTCATTGGGAGAGTGTATC 1066
Query 1014 TTTTCCTTACCCGTCTTGGCATAGACAAGGATCGGTTGCGTTTCCGCCAGCATCTAGCAA 1073
||||||||| ||||||||| ||||||||||| || |||| ||||| || ||||| ||||
Sbjct 1067 TTTTCCTTATCCGTCTTGGAATAGACAAGGAACGCCTGCGCTTCCGTCATCATCTTGCAA 1126
Query 1074 ATGAAATGGCCCACTATGCAGTAGATTGCTGGGATGCTGAAATTGAGACTTCATATGGGT 1133
|||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||| |
Sbjct 1127 ATGAAATGGCACACTATGCAACCGATTGTTGGGATGCTGAAATTGAGTGTTCATATGGTT 1186
Query 1134 GGATTGAATGTGTTGGGATAGCAGATAGGGCAGCAT-ACGACTTGCGTGCTCACTCC-AA 1191
|||||||||||||||| || ||||||||| | | || ||||||| |||||||||||| ||
Sbjct 1187 GGATTGAATGTGTTGGAATTGCAGATAGGTCTG-ATTACGACTTACGTGCTCACTCCGAA 1245
Query 1192 AAATGTGACCAT 1203
||| ||| ||||
Sbjct 1246 AAAAGTGGCCAT 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87800753205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5