BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922030
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
AT5G19990.1 | Symbols: RPT6A, ATSUG1 | regulatory particle trip... 339 1e-92
> AT5G19990.1 | Symbols: RPT6A, ATSUG1 | regulatory particle triple-A
ATPase 6A | chr5:6752006-6755080 FORWARD LENGTH=1560
Length=1560
Score = 339 bits (183), Expect = 1e-92
Identities = 205/216 (95%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 18 AGTAAGAATGCTCAGAGAAGAGTTGCAGCTGCTTCAAGAACCTGGGTTCTATGTGGGCGA 77
||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||
Sbjct 339 AGTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGAGA 398
Query 78 AGTGGTAAAAGTGATGGGAAAGAACAAGGTCTTGGTTAAGGTTTATCCAGAGGGGAAGTA 137
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 399 AGTGGTAAAAGTTATGGGAAAGAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAGTA 458
Query 138 TGTTGTTGATATTGACAAAAGTATATACATAACGAAAATCACTTCATCAACGAGAGTTGC 197
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 459 TGTTGTTGATATTGACAAAAGTATAGACATTACGAAAATCACTCCATCAACGAGAGTTGC 518
Query 198 TCTTCGTAATGATAGTTATGTTCTCCACCTGGTTCT 233
||||||||||||||| ||||||||||||||||||||
Sbjct 519 TCTTCGTAATGATAGCTATGTTCTCCACCTGGTTCT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13371221234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5