BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922044

Length=1429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:99212...   198    1e-49
  AT3G21960.2 | Symbols:  | Receptor-like protein kinase-related ...   104    2e-21


> AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992128-994580 
FORWARD LENGTH=1505
Length=1505

 Score =  198 bits (107),  Expect = 1e-49
 Identities = 140/154 (91%), Gaps = 10/154 (6%)
 Strand=Plus/Minus

Query  1254  AACAAAAAAGAGAGAAAGATATTCACAAACAGAAGCAAAGCTGTTCCTGGATTTACATGC  1313
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1422  AACAAAAAAGGGAGAAAGATATTCACAAACAGAAGCAAAGCTGTTCCTGGATTTACATGC  1363

Query  1314  TTCGTTGCAGACAAATCAATCTCAAAAAAGTCATATAACAGGGGTTTCATTAAAGGAAGG  1373
             ||||||||||||||||||| |||||| |||||||||||||    || |||||||||||  
Sbjct  1362  TTCGTTGCAGACAAATCAAACTCAAATAAGTCATATAACA----TT-CATTAAAGGAA--  1310

Query  1374  AACTCTCAGATTTCCAGAACACACTTAAAAAGCT  1407
               ||||||||||||||| |||||||||||| |||
Sbjct  1309  --CTCTCAGATTTCCAGCACACACTTAAAA-GCT  1279


> AT3G21960.2 | Symbols:  | Receptor-like protein kinase-related 
family protein | chr3:7737156-7739542 FORWARD LENGTH=1326
Length=1326

 Score =  104 bits (56),  Expect = 2e-21
 Identities = 82/95 (86%), Gaps = 0/95 (0%)
 Strand=Plus/Plus

Query  851  GACAAAGCAAGTGCTAATCACCAACCTTATGGCTATTATTCATGAGACTAGAAGTTTGAG  910
            ||| |||| | ||| ||| | |||| |||||| ||||||||| || || |||||||||||
Sbjct  807  GACCAAGCGATTGCAAATTAACAACTTTATGGGTATTATTCAAGAAACAAGAAGTTTGAG  866

Query  911  GAAGAACGGCATTATGATCCCGTCTCTAAGGAGCG  945
            |||||||||||||||||||||||| | ||||||||
Sbjct  867  GAAGAACGGCATTATGATCCCGTCCCCAAGGAGCG  901



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 70431364635


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5