BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922049

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29990.1 | Symbols: PFD6 | prefoldin 6 | chr1:10507593-10509...   686    0.0  


> AT1G29990.1 | Symbols: PFD6 | prefoldin 6 | chr1:10507593-10509098 
FORWARD LENGTH=740
Length=740

 Score =  686 bits (371),  Expect = 0.0
 Identities = 411/430 (96%), Gaps = 3/430 (1%)
 Strand=Plus/Plus

Query  4    AGACGACGGCGACGAATATGAGTTCATCGACGGCTGTTCGAGATTTGCAGAGAGACCTAG  63
            |||||||| ||||||| |||||||||||||   ||||||| |||||||||||||||||||
Sbjct  57   AGACGACGACGACGAAGATGAGTTCATCGA---CTGTTCGTGATTTGCAGAGAGACCTAG  113

Query  64   AGAACAAAGCCAATGATCTCGGCAAAATTCAGAAAGATATCGGGAAGAATCACCAGCTGA  123
            | ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  114  AAAACAAGGCTAATGATCTCGGCAAAATCCAGAAAGATATCGGGAAGAATCATCAGCTGA  173

Query  124  GGAAGAAGTATACGATCCAACTCGGTGAGAATGAGCTCGTGCTTAAGGAATTGGATTTGC  183
            | ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct  174  GAAAGAAGTATACGATCCAACTCGGTGAGAATGAGCTCGTGCTTAAGGAGTTAGATTTGC  233

Query  184  TGGAAGAAGATGCAAACGTCTACAAATTGATTGGTCCGGTGCTAGTGAAGCAGGATTTGG  243
            ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  234  TGGAAGAAGATGCTAACGTCTACAAATTGATTGGTCCGGTGTTAGTGAAGCAGGATTTGG  293

Query  244  CTGAAGCAAATGCAAATGTTCGTAAACGAATTGAGTACATCTCTGCTGAATTGAAACGGC  303
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  CTGAAGCTAATGCAAATGTTCGTAAACGAATTGAGTACATCTCTGCTGAATTGAAACGGC  353

Query  304  TTGATGCAATTCTTCAAGATATGGAAGAAAAACAAAACAACAAGAGAGAAACGATAATGA  363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  TTGATGCAATTCTTCAAGATATGGAAGAAAAACAAAACAACAAGAGAGAAACGATAATGA  413

Query  364  AGTTACAACAAAGGCTACAATCTATCCAGGCAGGAAAAGCAAAGGCTTGATTGAGCTAGT  423
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  414  AGTTACAACAAAGGCTACAAACTATCCAGGCAGGAAAAGCAAAGGCTTGATTGAGCTACT  473

Query  424  CAGTTGCAAC  433
            ||||||||||
Sbjct  474  CAGTTGCAAC  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5