BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922050
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30000.1 | Symbols: MNS3 | alpha-mannosidase 3 | chr1:105092... 3169 0.0
> AT1G30000.1 | Symbols: MNS3 | alpha-mannosidase 3 | chr1:10509211-10512468
REVERSE LENGTH=2344
Length=2344
Score = 3169 bits (1716), Expect = 0.0
Identities = 1852/1918 (97%), Gaps = 7/1918 (0%)
Strand=Plus/Plus
Query 1 AATTAG-AC-GGAGGATCTGAGCATGTCGAAATCTCTACCATATTCAGTTAAAGATATTC 58
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 AATTAGAACGGGGGGATCTGAGCATGTCGAAATCTCTACCATATTCAGTTAAAGATATTC 185
Query 59 ATTACGACAATGCCAAGTTCAGACATCGATCTCCTTTGAAGGTTTTTTCTCAAAGCTTGC 118
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 186 ATTACGACAATGCCAAGTTCAGACATCGATCTCCTTTAAAGGTTTTTTCTCAAAGCTTGC 245
Query 119 TTACTCTTAGTACAAAACGCAACTACGCCAGCTGTAGCACAGGGAAGTTCCTAATATTAA 178
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 246 TTACTCTTAGTACAAAACGCAACTACGCTAGCTGTAGCACGGGGAAGTTCCTTATATTAA 305
Query 179 TACTGTTCTTTGGAGTAGCATGTCTAATGCTTATGAGTAAGAGTCCGAATGAATCTGTTC 238
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 306 TACTGTTCTTTGGAGTAGCATGTCTAATGCTGATGAGTAAGAGTCCAAATGAATCTGGTC 365
Query 239 TTAATGAAAAAGGAAAGGTTACTTTTGTTGGGGGACTTAGGCTAGGGAGACTCTTGAGAA 298
||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct 366 TTAATGAGAAAGGAAAGGTCACTTTTGTTGGGGGACTTAGGCTAGGGGGACTTTTGAGAA 425
Query 299 AGCCACCTAGGCTTCCTCCTCGTTTATCACCTGACGAAGGACAATTAAGAGGTAGTTCCA 358
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 426 AGCCACCTAGGCTTCCACCTCGTTTATCACCTGACGAAGGACAATTAAGAGGAAGTTCCA 485
Query 359 CTAATGGCTCTACGGTTTCAAATTAC-GACCCAAAATGGGCAGCCAGGCAGCAAAGTGTG 417
|||||||||| || ||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 486 CTAATGGCTCAACTATTTCAAATT-CTGACCCAAAATGGGCAGCTAGGCAGCAAAGTGTA 544
Query 418 AAGGAGGCTTTTGACCATGCATGGTCTGGCTATAGAAAGTACGCCATGGGTTATGACGAG 477
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AAAGAGGCTTTTGACCATGCATGGTCTGGCTATAGAAAGTACGCCATGGGTTATGACGAG 604
Query 478 CTTATGCCTATTAGCCAGAAAGGTGTGGATGGCTTAGGAGGACTGGGTGCCACTGTTGTG 537
|| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 605 CTAATGCCTATTAGCCAGAAAGGTGTGGATGGTTTAGGAGGATTAGGTGCCACTGTTGTG 664
Query 538 GATGCTCTTGATACAGCCATGATAATGGGTCTTGATAATATCGTCTCTGAAGCAGGATCA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GATGCTCTTGATACAGCCATGATAATGGGTCTTGATAATATCGTCTCTGAAGCAGGATCA 724
Query 598 TGGGTTGAGACTCATCTCTTGGAGAGAATCATTCAAAAAGGTCAAGTTAATTTGTTTGAA 657
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 725 TGGGTTGAGACTCATCTCTTGGAGAGAATCAGTCAAAAAGGTCAAGTTAATTTGTTTGAA 784
Query 658 ACTACAATACGTGTCTTGGGTGGGCTTCTAAGTGCATACCATCTGAGTGGAGGAGAGCAG 717
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 785 ACTACAATACGTGTCTTAGGTGGGCTTCTAAGTGCATACCATTTGAGTGGAGGAGAGCAG 844
Query 718 GGTACGATGAACATGACCCATAATGGACCGAAACCAGTTATCTATCTAAATATTGCTAAG 777
|||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 845 GGTACGGTGAACATGACCCATGTTGGACCGAAACCAGTCATCTATCTAAATATTGCTAAG 904
Query 778 GATTTGGCTGACCGGCTACTTTCAGCTTTTACCTCCAGCCCTACTCCAGTTCCCTTTTGT 837
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 905 GATTTGGCTGACCGTCTACTTTCGGCTTTTACCTCCAGCCCTACTCCAGTTCCCTTTTGT 964
Query 838 GATGTGATATTGCATGAATCGACCGCTCATCCAGCTCCAGGAGGAGCGAGCAGTACAGCA 897
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 965 GATGTCATATTGCATGAATCGACTGCTCATCCAGCTCCAGGAGGAGCGAGCAGTACAGCA 1024
Query 898 GAAGTTGCCTCTGTACAGCTTGAATTTAACTACCTCAGTGCTATTTCTGGTGATCCAAAG 957
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1025 GAAGTTGCCTCTGTACAGCTTGAATTTAACTACCTCAGTTCTATTTCTGGTGATCCAAAG 1084
Query 958 TATAGTACAGAAGCCATGAAGGTCTTAGCTCATATAAAAACTCTTCCAAAGACAGAAGGT 1017
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1085 TATAGTACAGAGGCCATGAAGGTCTTAGCTCATATAAAAACACTTCCAAAGACAGAAGGT 1144
Query 1018 CTTGTTCCAATCTACATCAGCCCTCAAACAGGTGACTTTGTTGGTGAGAATATCAGGTTG 1077
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CTTGTTCCAATCTATATCAGCCCTCAAACAGGTGACTTTGTTGGTGAGAATATCAGGTTG 1204
Query 1078 GGATCTCGTGGTGATAGCTACTATGAGTATTTAATTAAGGTGTGGCTTCAGCAAGGAGCC 1137
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 GGATCTCGTGGTGATAGCTACTATGAGTATTTAATTAAGGTGTGGCTTCAGCAAGGAGCT 1264
Query 1138 AAGTTGAACAGTAATTTCACATATTTGCATGATATGTACATTGAGGCAATGAAAGGAGTC 1197
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 AAGTTGAATAGTAATTTCACATATTTGCATGATATGTACATTGAGGCAATGAAAGGAGTC 1324
Query 1198 AGGCATTTGCTTGTGCGCAATTCAATTCCAAAAGGTCTGGTCTTTGTAGGGGAGTTACCT 1257
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 AGGCATTTGCTTGTGCAAAATTCAATTCCAAAAGGTCTGGTCTTTGTAGGGGAGTTACCT 1384
Query 1258 TACGGGTCTAAGGGAGAATTCAGTCCCAAAATGGATCATCTGGTATGCTTCTTGCCTGGT 1317
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1385 TACGGGTCTAAGGGAGAATTCAGTCCAAAAATGGATCATTTGGTATGCTTCTTGCCTGGT 1444
Query 1318 ACTCTTGCTCTCGGTGCTACCAAGGGCCTCACAAAGGAACAAGCCCTGAAGGAAAATCTT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ACTCTTGCTCTCGGTGCTACCAAGGGCCTCACAAAGGAACAAGCCCTGAAGGAAAATCTT 1504
Query 1378 TTATCCTTTGAGGACCTAGAAAATCTGAAACTTGCGGAAGATTTAGCAAAAACATGCTTT 1437
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1505 TTGTCCTTTGAGGACCTAGAAAATCTGAAACTTGCAGAAGATTTAGCGAAAACATGCTTT 1564
Query 1438 GAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 GAGATGTATGAAGTAACTGCCACTGGCCTTGCTCCAGAAATTGCTTACTTTCACACAAAG 1624
Query 1498 GATTACTCTGAGGATGGTCTTGATGGTGGGAATAAGAGTTCAATGTATGCAAATGACATA 1557
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1625 GATTACACTGAGGATGGTCTTGATGGTGGGAATAAGAGTTCTATGTATGCAAATGACATA 1684
Query 1558 ATCATAAAGCCCGCTGATCGACATAATCTACTGCGCCCCGAAACTGTTGAATCACTCTTT 1617
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1685 ATCATTAAGCCCGCTGATCGACATAATCTACTGCGCCCTGAAACTGTTGAATCACTCTTT 1744
Query 1618 GTCCTCTATCGTATCACAAAAGATACAAAATACCGAGATCAAGGTTGGCAAATCTTTGAA 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1745 GTCCTCTATCGTATCACAAAAGATACAAAATACCGAGATCAAGGTTGGCAAATTTTTGAA 1804
Query 1678 GCATTTGAGAAGTACACGAAGGTGAAATCAGGTGGATACACATCATTGGATGATGTAACA 1737
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1805 GCTTTTGAAAAGTACACAAAGGTGAAATCAGGTGGATACACATCATTGGATGATGTAACA 1864
Query 1738 GAAGTGCCTCCTCATAGGAGAGATAAGATGGAGACATTTTTCCTTGGTGAAACATTGAAG 1797
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 GAAGTGCCTCCTCATAGAAGAGATAAGATGGAGACATTTTTCCTTGGTGAAACATTGAAG 1924
Query 1798 TACTTATACTTGCTCTTTGGAGATGACTCAGTGATACCATTGGATAAGTTTGTTTTCAAC 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TACTTATACTTGCTCTTTGGAGATGACTCAGTGATACCATTGGATAAGTTTGTTTTCAAC 1984
Query 1858 ACTGAAGCTCATCCATTGCCAATAAGAA-A--CACCTGAAGGATTAGTTTTGAAGACT 1912
||||||||||||||||| |||||||||| | |||||||||| |||||||||||||||
Sbjct 1985 ACTGAAGCTCATCCATTACCAATAAGAAGAAACACCTGAAGGCTTAGTTTTGAAGACT 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94778628960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5