BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922054
Length=298
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56750.1 | Symbols: NDL1 | N-MYC downregulated-like 1 | chr5... 143 1e-33
> AT5G56750.1 | Symbols: NDL1 | N-MYC downregulated-like 1 | chr5:22957877-22960916
FORWARD LENGTH=1460
Length=1460
Score = 143 bits (77), Expect = 1e-33
Identities = 95/104 (91%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 66 AAGAAGCATCGTGTTATAACTGCTAGTGGTGTTGTGTCTGTCATTGTCTTTGGAGATAGA 125
||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 167 AAGGAGCATCGTGTTAAAACTGCTAGTGGTGTTGTGTCTGTCATTGTCTATGGAGACAGA 226
Query 126 GAAAAGCGACCATCGATTACTTATCCTGATTTGGCCTTAAACCA 169
||||||| | ||| |||||||||||||||||| ||| |||||||
Sbjct 227 GAAAAGCCAGCATTGATTACTTATCCTGATTTAGCCCTAAACCA 270
Score = 137 bits (74), Expect = 5e-32
Identities = 85/90 (94%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 178 AGTTAGGAGCTGCTCCGATTTGTCCTAATGACTCAGCCCCTTGTGCTGAAAACTTGGCAG 237
|||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 366 AGTTAGGAGCTGCTCCAATTTGTCCTAATGATTCAGTCCCTTCTGCTGAAAACTTGGCAG 425
Query 238 ATCAGATCCTTGAA-TTCTCAACTTTTTCG 266
|||||||||||||| |||||||||||||||
Sbjct 426 ATCAGATCCTTGAAGTTCTCAACTTTTTCG 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13773363226
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5