BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922056
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30070.2 | Symbols: | SGS domain-containing protein | chr1:... 966 0.0
AT1G30060.1 | Symbols: | COP1-interacting protein-related | ch... 134 1e-30
> AT1G30070.2 | Symbols: | SGS domain-containing protein | chr1:10546594-10548140
REVERSE LENGTH=958
Length=958
Score = 966 bits (523), Expect = 0.0
Identities = 661/723 (91%), Gaps = 28/723 (4%)
Strand=Plus/Plus
Query 1 GCTGCTCGAAGATTATTTCCATGGCGGAAGAAGTTGCGCTTGATTTGGATGAACTCAGGC 60
||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 49 GCTGCTCTAAGATTATATCCATGGCGGAAGAAGTTGGGCTTGATTTGGAAGAACTCAGGC 108
Query 61 AACTCCAGAACATCGCCAAGAGACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 109 AACTCCAGAACATCGCCAAGAGACCTCGTGTTCTCAATCTCATCAATTCCGAGATTTCAA 168
Query 121 ACTTGGAGAAGCTGAGAGACTCTGCAGTCGGTTCAAGTGC-AAAGCCAGAGGTCCCAGTT 179
||||||||||||||||||||||||||||| |||||| ||| ||| ||| |||| ||||||
Sbjct 169 ACTTGGAGAAGCTGAGAGACTCTGCAGTCAGTTCAAATGCGAAA-CCAAAGGTACCAGTT 227
Query 180 ACAGTTCCTGCACCGGTTTCATCTTCGGTTAAGCCGGTTTATTC---GGCAGTGAACTAT 236
|||||||||||||||||||| ||||||| ||||||||||| ||| |||| ||||||||
Sbjct 228 ACAGTTCCTGCACCGGTTTCTTCTTCGGGTAAGCCGGTTTCTTCTTCGGCATTGAACTAT 287
Query 237 GTAACTCTCGGAACATTCAGCTGGGATCAAGACAATGAAAAAGTCAAGATGTACATATCT 296
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 288 GTAACTCTCGGAACATTCAGCTGGGATCAAGACAATGACAAAGTCAAGATGTACATATCC 347
Query 297 TTGGAAGGTGTTGATGAGGACAAGGTTCAAGCCGAGTTCAAGCCAATGTCTTTGGACATC 356
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 348 TTGGAAGGTGTTGATGAGGACAAGGTTCAAGCTGAGTTCAAGCCAATGTCTTTAGACATC 407
Query 357 AAAATCCATGATGTTCAAGGGAAGAATTACAGATGTGCCATCCCCAAGTTGCATAAAGAG 416
|| ||||||||||| ||||| || |||||| ||||||||||||| |||||| ||| |||
Sbjct 408 AAGATCCATGATGTACAAGGAAAAAATTACCGATGTGCCATCCCGAAGTTGTGTAAGGAG 467
Query 417 ATTGTGCCAGAGAAATGTAAAGTGCTTGTAAAGCCTAAGAGGATAGTTATCACAATGTTC 476
||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 468 ATTATGCCTGAGAAATGTAAAGTGCTTGTAAAGCCTAAGAGGATAGTTATCACTATGGTC 527
Query 477 AAGTCTTCCAGAGGAAACTGGCTTGACATTCACCACAAAGAAGACAAG-A-T-------- 526
|||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 528 AAGTCTTCCAGAGGAAACTGGCTTGACATTCACCACAAAGAAGACAAGTACTGTTTGTTG 587
Query 527 -------A-A--AA-CCGAGTTTGGAGAAAGAGAAAGACCCAATGGCTGGAATTATGGGC 575
| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 TTTGTTCAGATTAAACCGAGTTTGGAGAAAGAGAAAGACCCAATGGCTGGAATTATGGGG 647
Query 576 ATGATGAAGAACTTGTATGAGGATGGAGATGAAGAAATGAAGAAGACAATAGCTAAAGCT 635
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ATGATGAAGAACTTGTATGAGGATGGAGATGAAGAAATGAAGAAGACAATAGCTAAAGCC 707
Query 636 TGGACAGATGCTAGGTCAGGCAAAGCAGCTGATCCCTTAAAAGGACTATGAAGCTTC-TG 694
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||
Sbjct 708 TGGACAGATGCTAGGTCAGGCAAAGCAGCAGATCCTTTAAAAGGACTATGAAGCT-CATG 766
Query 695 TGA 697
|||
Sbjct 767 TGA 769
> AT1G30060.1 | Symbols: | COP1-interacting protein-related |
chr1:10545087-10545906 REVERSE LENGTH=531
Length=531
Score = 134 bits (72), Expect = 1e-30
Identities = 84/90 (93%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 597 GATGGAGATGAAGAAATGAAGAAGACAATAGCTAAAGCTTGGACAGATGCTAGGTCAGGC 656
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 442 GATGGAGATGAAGAAATGAAGAAGACAATAGCCAAAGCGTGGACGGATGCTAGGTCAGGC 501
Query 657 AAAGCAGCTGATCCCTTAAAAGGACTATGA 686
|||||||| ||||| |||||||||| ||||
Sbjct 502 AAAGCAGCAGATCCTTTAAAAGGACAATGA 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5