BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922061

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27350.1 | Symbols:  | Protein of unknown function (DUF1223)...   353    4e-97


> AT4G27350.1 | Symbols:  | Protein of unknown function (DUF1223) 
| chr4:13690821-13692796 REVERSE LENGTH=1170
Length=1170

 Score =  353 bits (191),  Expect = 4e-97
 Identities = 226/243 (93%), Gaps = 2/243 (1%)
 Strand=Plus/Plus

Query  1    GAGGCGTTGAATCTGGGTACGATGTTTACTCCGCAGCTTGTAG-TTCAAGGCCGTTCTCA  59
            |||||||||||||||| |||||||||||||||||||||||| | | ||||| ||||||||
Sbjct  518  GAGGCGTTGAATCTGGATACGATGTTTACTCCGCAGCTTGT-GATCCAAGGTCGTTCTCA  576

Query  60   ATTGATCGGAAACGAGGAAGAGACGCTGTTAAAATCAATCTCCGAAGCGCCTAGGTTTCC  119
            ||||||||||||||| || ||||||||| | ||||| |||||||||||||||||||||||
Sbjct  577  ATTGATCGGAAACGAAGAGGAGACGCTGCTCAAATCTATCTCCGAAGCGCCTAGGTTTCC  636

Query  120  TTCTCCAGCTTTCCGGGCGACTTTCCAGAGACCAACCTCAGGGACACTGCAAGTATCACT  179
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  637  TTCTCCAGCCTTCCGGGCGACTTTCCAGAGACCAACCTCAGAGACACTGCAAGTATCACT  696

Query  180  CACCGGAGCTTTGAGAGTGAAAGTAGATGGAAACGGAATGGACATAATTGTGGCGATATA  239
            |||||||||||||||| |||||||||| ||| |||||||||||||||| ||||| |||||
Sbjct  697  CACCGGAGCTTTGAGAATGAAAGTAGACGGAGACGGAATGGACATAATGGTGGCAATATA  756

Query  240  CGA  242
            |||
Sbjct  757  CGA  759



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5