BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922068
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30160.2 | Symbols: | Protein of unknown function (DUF295) ... 470 1e-131
AT1G30170.1 | Symbols: | Protein of unknown function (DUF295) ... 121 1e-26
AT1G05550.3 | Symbols: | Protein of unknown function (DUF295) ... 60.2 3e-08
> AT1G30160.2 | Symbols: | Protein of unknown function (DUF295)
| chr1:10606251-10607784 FORWARD LENGTH=1273
Length=1273
Score = 470 bits (254), Expect = 1e-131
Identities = 326/360 (91%), Gaps = 7/360 (2%)
Strand=Plus/Plus
Query 1 TTTGGGTTTCTTCTGCAATAATGTCTCGGCTCCTCTCCAAGCTCGT-TCCCCTCATTCAC 59
||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||
Sbjct 4 TTTGGGTTTCTTCTGCAATAATGTCTCGGCTTCTCTCCAAGCTC-TCTCCTCTCATTCAC 62
Query 60 AAGAGCAGTAGGAGCGTTCGTTCGTTTTCATCCTCCACGACCGGCCCATGTGTTTCTATT 119
|| |||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 63 AAAAGCAGTAGGAACATTCGTTCGTTTTCATCCTCAACGACCGGCCCATGTGTTTCTATT 122
Query 120 GGCAGCATTATGGAACCCTCGCCAGACGGCGGCAACCTCGGACAAGTCCTGTTGTTCAAC 179
| | | || |||||||||| || | | |||||||||||||||||||||||||||||||
Sbjct 123 TGTACCGTTGTGGAACCCTCTCC-G--GACGGCAACCTCGGACAAGTCCTGTTGTTCAAC 179
Query 180 ATACCAGATTTCAAGTTAGTCAGAGCGGACAAAACATATCCCAATGAGCTTTATGACGCC 239
||||||||| | |||||||||| ||||||||||| ||||||| | |||||||||||||||
Sbjct 180 ATACCAGATATGAAGTTAGTCACAGCGGACAAAATATATCCCGACGAGCTTTATGACGCC 239
Query 240 CAGTTGGTGGGAGCTTCCCATGGATGGGGATTTTTCTCCAATAGAACAGATCGGTCGTTA 299
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
Sbjct 240 CAGTTGGTGGGAGCTTCCCATGGATGGGGACTTTTCTCCGATAGAACAAATCGGTCGGCA 299
Query 300 CTTATCAGCGACTATCTGAACCC-TCATGCTTCCAAGTCACAACCAAAGATGATTCCTCT 358
||||||||||||||| ||||||| | |||||||||||||| ||||||||||||||| |||
Sbjct 300 CTTATCAGCGACTATTTGAACCCCT-ATGCTTCCAAGTCAAAACCAAAGATGATTCATCT 358
> AT1G30170.1 | Symbols: | Protein of unknown function (DUF295)
| chr1:10607888-10609618 REVERSE LENGTH=1370
Length=1370
Score = 121 bits (65), Expect = 1e-26
Identities = 97/110 (88%), Gaps = 11/110 (10%)
Strand=Plus/Plus
Query 1 TTTGGG--TTTCTTCTGCAATAATGTCTCGGCTCCTCTCCAAGCTCGT-TCCCCTCATTC 57
|||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 68 TTTGGGTTTTTCTTCTGCAATAATGTCTCGGCTTCTCTCCAAGCTC-TCTCCCCTCATTC 126
Query 58 ACAAGAGCAGTAGGAGCGTTCGTTCGTTTTCATCCTCCACGACCGG-CCC 106
||||||| | || ||||||||||||||||||||||||||| || |||
Sbjct 127 ACAAGAG--G-AG---CGTTCGTTCGTTTTCATCCTCCACGACAGGTCCC 170
> AT1G05550.3 | Symbols: | Protein of unknown function (DUF295)
| chr1:1640959-1643917 REVERSE LENGTH=1597
Length=1597
Score = 60.2 bits (32), Expect = 3e-08
Identities = 55/66 (83%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 247 TGGGAGCTTCCCATGGATGGGGATTTTTCTCCAATAGAACAGATCGGTC-GTTACTTATC 305
|||||||||||||||||||||||||||||| | | || ||||| || || || ||||
Sbjct 537 TGGGAGCTTCCCATGGATGGGGATTTTTCTGTGACCGGACTGATCGTTCCGT-ACGTATC 595
Query 306 AGCGAC 311
||||||
Sbjct 596 AGCGAC 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5