BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922079
Length=292
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30250.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 412 7e-115
> AT1G30250.1 | Symbols: | unknown protein; Has 5 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:10646987-10647511 REVERSE LENGTH=525
Length=525
Score = 412 bits (223), Expect = 7e-115
Identities = 265/284 (93%), Gaps = 7/284 (2%)
Strand=Plus/Plus
Query 11 TTTGATAAAAATGGTTGATACCCGAAA-CACCCTTTTCGTCTTCCGACAAGACCAGCAGG 69
|||||||||||||||||||| || ||| ||||| |||||||| ||||| |||||| ||||
Sbjct 1 TTTGATAAAAATGGTTGATATCC-AAAGCACCCGTTTCGTCTACCGACCAGACCAACAGG 59
Query 70 CTCT-TGCACCTCAACCTCGGACTCCATTCTCAGCCGTGACTGCGCACCGTGCCACAGCC 128
|||| | |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 CTCTCT-CACCTCAACCACGGACTCCATTCTCAGCCGTGACTGCGCACCGTGCTACAGCC 118
Query 129 ATACGACGGTGCCGCCTCATGATCTCTGTCACGACCCTCGAAATGATCCTTGAGGAAGAG 188
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 119 ATACGACAGTGCCGCCTCATGATCTCTGTCACAACCCTCGAAATGATCCTTGAGGAAGAG 178
Query 189 ATAACACCAGAAGAAGGTCATCCAAACATTACCCCTGCGATAGATTCTCTTGCGGTGGTG 248
||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| |
Sbjct 179 ATAACACCAGAAGAAGGTCATCCAAGCATTGCCCCTGCGATGGATTCTCTTGCGGTG-T- 236
Query 249 TTTCCGGTGACCTCTTGTTTCTAGGACATCAAGAAACAAGTCTC 292
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TT-CCGGTGACCTCTTGTTTCTAGGACATCAAGAAACAAGTCTC 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13471756732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5