BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922080

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30260.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   429    7e-120


> AT1G30260.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Galactosyltransferase family protein (TAIR:AT4G21060.1); 
Has 30 Blast hits to 30 proteins in 8 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:10651051-10651728 
FORWARD LENGTH=678
Length=678

 Score =  429 bits (232),  Expect = 7e-120
 Identities = 302/334 (90%), Gaps = 12/334 (4%)
 Strand=Plus/Plus

Query  1    AATCCCTAAA-TTTCAAGATCATGGCGAGCGCACGACTTGCAAGATTCATAACGGAAGTT  59
            |||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct  88   AATCCCTAAATTTTCAAGATCATGGCGACCTCAAGACTTGCAAGATTCATAACGGAAGTT  147

Query  60   GCGCCACCGCAATTTGTCACGGTGATGCGGAGAAGAACGGCGAAGGTACTCGACACGATC  119
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  148  GCGCCACCGCAATTTGTCACGGTGATGCGGCGAAGAACGGCGAAGGTACTCGACACGATC  207

Query  120  AAGGAGGAAGAAAGAGAAGTTGGCACTGACTCTATATTTTCATCTTCTTTAAATTCGAAG  179
            ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct  208  AAGGAGGAAGAAAGAGAAGTTGGCACTGACTCTATATTTCCTTCTTCTTTCAATTCGAAG  267

Query  180  AACATCTCTTCACCGTTTACTTCTACTTATCCCTCCTCTGTCTCTTC---TTC---T---  230
            || ||||||||||||||||||||| ||||| | |||||||| |||||   |||   |   
Sbjct  268  AAGATCTCTTCACCGTTTACTTCTCCTTATTCATCCTCTGTTTCTTCAGCTTCAGCTTCA  327

Query  231  GCTTCATGCAGTTCTGGTCTAAA-AAACTTCCCGGTTATAGAGAACCGGGGATCTTTTTC  289
            |||||||||| ||| |||||||| ||| |||||||||| |||||||||||| || ||| |
Sbjct  328  GCTTCATGCACTTCCGGTCTAAATAAA-TTCCCGGTTACAGAGAACCGGGGCTCCTTTCC  386

Query  290  GGTTTTCAAGAACTGAACTAATTTTCAGATGTAA  323
            |||||||||||||| ||| |||||||||||||||
Sbjct  387  GGTTTTCAAGAACTAAACCAATTTTCAGATGTAA  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15130592449


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5