BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922090
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30370.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2327 0.0
> AT1G30370.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:10719169-10720758 REVERSE LENGTH=1590
Length=1590
Score = 2327 bits (1260), Expect = 0.0
Identities = 1485/1593 (93%), Gaps = 18/1593 (1%)
Strand=Plus/Plus
Query 24 ATGGAGAACGCATTGGTCAAAACTCCATTGAGGAAGCTAAGAAGAAGAAGAA-TAAAACG 82
||||||||||||||||||||||||||| |||| ||||||||||||||||||| | |||||
Sbjct 1 ATGGAGAACGCATTGGTCAAAACTCCACTGAGAAAGCTAAGAAGAAGAAGAACT-AAACG 59
Query 83 GGTCTGGAGATT------GAAGCT---G---GCATGGAAGTCTATCAAGATCCGGGTCAA 130
|||||||||||| |||||| | |||||||| ||||||||||||||||||||
Sbjct 60 GGTCTGGAGATTGAAGCAGAAGCTAAAGCTTGCATGGAAATCTATCAAGATCCGGGTCAA 119
Query 131 GTCACATCTTCCAGGTTTCTTGTCAACCAAGAAACACCTCTTCCACGTTAAATCACGGAA 190
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 120 GTCACATCTTCCGGGTTTCTTGTCAACCAAGAAACACCTCTTCCACATTAAATCACGAAA 179
Query 191 GGAAGAACAAGATTTGTCTCAAGTGGCTCGGAGGATCTGCAAAATCTCCAACGACTCGAC 250
||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 180 GGAAGAACAAGATTTGTCTCAAGTGGCCCAGAGGATCTGCAAAATCTCCAATGACTCGAC 239
Query 251 CAAATCGCTGGCGTTTTTGCTTCAGCTTCCGAAATACTCAGCGGACGATTTTCTTGACCG 310
|||||| ||||||||| | ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 240 CAAATCACTGGCGTTTCTACTTCAGCTTCCAAAATACTCAGCCGACGATTTTCTTGACCG 299
Query 311 AGGCGATCTGATGACTCCAGCTACGTCCCCAAGGGAGAATATATCTAAAATGTGGCGTGA 370
||||||||||||||||||||| |||| |||||||| || ||||| ||||||||||||||
Sbjct 300 CGGCGATCTGATGACTCCAGCTGCGTCTCCAAGGGAAAAAATATCCAAAATGTGGCGTGA 359
Query 371 GCTTCACGGTAGCAACAATTGGGAGAATCTTCTCGATCCTCTACATCCATGGCTTAGGAG 430
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 360 GCTTCACGGTAGCAACAATTGGGAGAATCTTCTTGATCCTCTGCATCCATGGCTTAGGAG 419
Query 431 AGAAGTAACCAAATATGGAGAATTCGTGGAATCCGTCTACGATTCACTTGATTTCGATCC 490
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 420 AGAAGTAACCAAATATGGAGAATTCGTGGAATCCGTTTATGATTCACTTGATTTCGATCC 479
Query 491 TTTATCCGAATTCTGCGGAAGCTCTAGATACAACAGGAACAAACTCTTCGAAGAGCTTGG 550
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 TTTATCCGAATTCTGTGGAAGCTCTAGATACAACAGGAACAAACTCTTTGAAGAGCTTGG 539
Query 551 TTTAACCAAACATGGTTACAAGGTAACCAAATACATCTATGCGATGTCTCATGTCGATGT 610
|||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||| ||
Sbjct 540 TTTAACCAGACATGGTTACAAGGTAACGAAATACATCTACGCGATGTCTCGTGTCGACGT 599
Query 611 TCCTCAGTGGTTCTTAAGCTCAGCTATGGGAGAGACATGGAGCAAAGATTCGAACTGGAT 670
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 600 TCCTCAGTGGTTCTTAAGCTCGGCTTTGGGAGAGACATGGAGCAAAGATTCCAACTGGAT 659
Query 671 GGGGTTTGTAGCTGTGAGTGGAGACAGAGAGTCGTTGAGGATTGGTCGGAGAGACATTGT 730
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGGCTTTGTAGCTGTGAGTGGAGACAGAGAGTCGTTGAGGATTGGTCGGAGAGACATTGT 719
Query 731 TGTGGCGTGGCGTGGAACGGTGACTCCCACAGAATGGTTCATGGATCTTAGAACAAGTAA 790
|||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 720 TGTGGCGTGGCGTGGAACGGTGACTCCCACGGAATGGTTCATGGATCTTAGGACGAGTAT 779
Query 791 AGAGCCGTTCGATTGC-AAGGGAGAACATGGCAAGAACGTGGTCAAGGTCCAAAGCGGGT 849
|||||||||||||| |||| | |||||||||||| |||||| ||||| ||||| ||||
Sbjct 780 GGAGCCGTTCGATTGTGAAGGAA-AACATGGCAAGACCGTGGTTAAGGTGCAAAGTGGGT 838
Query 850 TTTTCAGTATCTACAAATCGAAAAGCAAACTCACACGGTACAACAAAGAAAGTGCATCAG 909
|||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 839 TTTTAAGTATCTACAACTCGAAAAGCGAACTCACACGGTACAACAAAGAAAGTGCATCTG 898
Query 910 AGCAGACGATGGAGGAAGTGAAACGGCTAGTGAAtttttttAAGGATAGAGGCGAAGAGG 969
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 AGCAGACGATGGATGAAGTGAAGCGGCTAGTGAATTTTTTTAAGGATAGAGGCGAAGAGG 958
Query 970 TGAGCCTAACCATCACGGGGCATAGCCTAGGAGGCGCGTTGGCGCTTATGAACGCTTATG 1029
| ||||||||||| || ||||||||||| ||||| ||| ||||||||||||||||||| |
Sbjct 959 TAAGCCTAACCATTACCGGGCATAGCCTCGGAGGTGCGCTGGCGCTTATGAACGCTTACG 1018
Query 1030 AGGCGGCCAGAGATGTTCCAGCATTATCTGGTAACGTTTCTGTGATCTCCTTTGGTGCGC 1089
||||||| |||||||||||||| |||||||||||| |||| |||||||| ||||||||||
Sbjct 1019 AGGCGGCTAGAGATGTTCCAGCGTTATCTGGTAACATTTCAGTGATCTCGTTTGGTGCGC 1078
Query 1090 CGAGAGTAGGTAACTTGGCATTCAAGGAAAGGCTAAATAGTTTAGGTGTTAAGGTGTTAC 1149
|||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 1079 CGAGGGTAGGTAACTTGGCATTCAAGGAAAAGCTAAACAGTTTAGGAGTTAAGGTGTTAC 1138
Query 1150 GTGTGGTGAACAAGCAAGACATTGTCCCTAAGCTTCCTGGTATCGTGTTCAACAAGGTAC 1209
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1139 GTGTGGTGAACAAGCAAGACATTGTACCTAAGCTACCTGGTATCGTGTTCAACAAGGTAC 1198
Query 1210 TAAACAAACTTAACCCGATTACTTCAAGGCTCAATTGGGTCTACAGGCACGTCGGAACGC 1269
| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1199 TTAACAAACTTAATCCGATAACTTCAAGGCTCAATTGGGTCTACAGGCATGTCGGAACGC 1258
Query 1270 AGCTTAAGCTCGATGTGTTTAGTTCGCCTTACGTAAAACGCGATTCAGACTTAGGGAGGG 1329
||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 AGCTTAAACTCGATGTCTTCAGTTCGCCTTACGTAAAACGTGATTCAGACTTAGGGAGGG 1318
Query 1330 CGCATAATCTAGAGGTGTATCTCCATGTTTTGGATGGCTTCCACCGTAAGAAATCTGGGT 1389
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 CTCATAATCTAGAGGTGTATCTCCATGTTTTGGATGGCTTCCACCGCAAGAAATCTGGGT 1378
Query 1390 TTAGGGTTAACGCAAGGAGAGACGTTGCTTCTGTGAACAAGAGCACGGATATGTTGTTGG 1449
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1379 TTAGGGTTAACGCTAGGAGAGACGTTGCTTCGGTGAACAAGAGCACAGATATGTTGTTGG 1438
Query 1450 ATCATCTAAGAATACCTGAGTTTTGGTACCAAGTGGCACATAAGGGTCTGATCCTCAACA 1509
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1439 ATCATCTAAGAATACCTGAGTTTTGGTACCAAGTGGCACATAAGGGTCTGATCCTTAACA 1498
Query 1510 AACAGACCGGCCGGTGGGTGAAGCCCGTCCGTGCGCCCGAAGACATTCCCTCTCCGTTAT 1569
||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 1499 AACAGACTGGCCGGTGGGTGAAGCCTGTCCGTGCACCTGAAGACATTCCCTCTCCGTTA- 1557
Query 1570 CC-ACCGGACCAAAACCGATTTATAACTTATGA 1601
|| |||||||||||||| ||||||| |||||||
Sbjct 1558 CCGACCGGACCAAAACCTATTTATAGCTTATGA 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80120069820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5