BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922091
Length=383
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28823.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 379 9e-105
> AT5G28823.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: cultured cell; BEST
Arabidopsis thaliana protein match is: Zinc knuckle (CCHC-type)
family protein (TAIR:AT2G07760.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:10837849-10839826
REVERSE LENGTH=1707
Length=1707
Score = 379 bits (205), Expect = 9e-105
Identities = 303/350 (87%), Gaps = 7/350 (2%)
Strand=Plus/Plus
Query 14 GAATGTGATGGCTACTCCCGCAAAGGTCTTTTCAATTATCACTACCTCGGCTTCAGGGGT 73
||| ||||||||||||||||||||||||| | ||| || ||||||||| || |||||||
Sbjct 1356 GAAAGTGATGGCTACTCCCGCAAAGGTCTCTACAAATAACACTACCTCTACTGCAGGGGT 1415
Query 74 CCATTCTAGTACT-A-A-TTCTTTTCGCAAAGCCTCTAGCTCAAATAAATATGCAGTGCT 130
| | ||||||||| | | |||||| |||||||| ||||| |||||||||| ||| |||||
Sbjct 1416 CAAATCTAGTACTAATACTTCTTTCCGCAAAGCTTCTAGTTCAAATAAATTTGCGGTGCT 1475
Query 131 GGATTTAGCATCGGATGTGGTACTGC-CTGATGATTCAGAAGA-AGATGTTTCTTCCGGG 188
||||||||||||||||||||| |||| | || |||||| || | | || |||| | |
Sbjct 1476 GGATTTAGCATCGGATGTGGTTCTGCGC-GAAGATTCA-AACATGGTTGATTCTGACAAG 1533
Query 189 TCGGATGATTCGGATGAGGATCTCATTTTGAATCTCAAGTCACCATTTTCAGAAAAACAT 248
|| || ||||| |||||||||||||| ||||||| |||||| ||||||||| |||||||
Sbjct 1534 TCTGAGGATTCAGATGAGGATCTCATAATGAATCTAAAGTCAACATTTTCAGGAAAACAT 1593
Query 249 CTCCAAGACAGACCGTTGCAATTGCCGATCAAGGCAATTAATATTGGTCGTGGAGGAAGA 308
||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||
Sbjct 1594 CTCCAAGACAGACCGTTGCAATTTCCGAACAAGGCAATAAATATTGGTCATGGAGGAAGA 1653
Query 309 GGAAGGGGAAGACGCGGTCGAGGGAATCGTGGTCGACGAGGTGGGTTTGG 358
||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1654 GGAAGAGGAAGACGAGGTCGAGGAAATCGTGGTCGACGAGGTGGGTTTGG 1703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18046121891
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5