BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922096

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G09150.2 | Symbols: HY2, GUN3 | phytochromobilin:ferredoxin ...   183    8e-46


> AT3G09150.2 | Symbols: HY2, GUN3 | phytochromobilin:ferredoxin 
oxidoreductase, chloroplast / phytochromobilin synthase (HY2) 
| chr3:2803528-2805564 FORWARD LENGTH=1358
Length=1358

 Score =  183 bits (99),  Expect = 8e-46
 Identities = 111/117 (95%), Gaps = 0/117 (0%)
 Strand=Plus/Plus

Query  146  CAGGAAAAGTATAGTACCATGACAGGACTGGATGGGAAGACCGAAATTCAAATGCTTGCT  205
            |||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct  357  CAGGAAAAGTATAGTAGCATGACAGGACTAGATGGTAAGACCGAACTTCAAATGCTTGCT  416

Query  206  TTTAAATCTTCAAAGATTAGACTCTTGAGGAGCATGGCCATAGAGAATGAGACAATG  262
            |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  417  TTTAAATCTTCAAAGATTAGACTCTTGAGGAGTATGGCAATAGAGAATGAGACAATG  473



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18096389640


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5