BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922101
Length=1936
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30460.1 | Symbols: CPSF30, ATCPSF30 | cleavage and polyaden... 3033 0.0
> AT1G30460.1 | Symbols: CPSF30, ATCPSF30 | cleavage and polyadenylation
specificity factor 30 | chr1:10770813-10775402 REVERSE
LENGTH=2631
Length=2631
Score = 3033 bits (1642), Expect = 0.0
Identities = 1842/1940 (95%), Gaps = 7/1940 (0%)
Strand=Plus/Plus
Query 1 CCAAACCCTAGAAAAA---TT-G-AATGGAGGAGGCTGATGGACTCAGCTTCGATTTCGA 55
|||||||||||||||| || | ||||||||| ||||||||||| ||||||||||||||
Sbjct 55 CCAAACCCTAGAAAAATCCTTAGCAATGGAGGATGCTGATGGACTTAGCTTCGATTTCGA 114
Query 56 AGGCGGTCTCGATTCCGGACCTGCTCAGCCCTCCGCTTCAGTCCCGGTTGCTCCGCCTGA 115
||||||||| ||||||||||||| |||| | ||||||| ||||||||||||||||||||
Sbjct 115 AGGCGGTCTTGATTCCGGACCTGTTCAGAACACCGCTTCCGTCCCGGTTGCTCCGCCTGA 174
Query 116 TAACTCTTCCTCCGCCGCTGTTAACGTAGCACCGACCTACGATCACTCCTCCGCGACGGT 175
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 175 AAACTCTTCCTCCGCCGCTGTTAACGTAGCACCGACCTACGATCATTCTTCCGCGACGGT 234
Query 176 GGCGGGAGCTGGCAGGGGAAGAAGTTTCCGGCAGACTGTTTGCAGACACTGGCTTCGAGG 235
||| |||||||| ||||| ||||||||||| || |||||||| |||||||||||||||||
Sbjct 235 GGCTGGAGCTGGGAGGGGTAGAAGTTTCCGTCAAACTGTTTGTAGACACTGGCTTCGAGG 294
Query 236 TCTGTGTATGAAAGGTGACGCCTGTGGGTTTCTCCATCAGTACGATAAAGCTCGTATGCC 295
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 295 TCTGTGTATGAAAGGTGACGCCTGTGGGTTTCTCCATCAGTTCGATAAAGCTCGTATGCC 354
Query 296 AATCTGCCGATTTTTCCGGTTATACGGTGAATGTCGAGAGCAGGATTGTGTGTATAAGCA 355
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 355 GATCTGCCGTTTTTTCCGGTTATACGGTGAATGTCGAGAGCAGGATTGTGTGTATAAACA 414
Query 356 TACCAATGAAGATATCAAAGAATGCAATATGTACAAGCTGGGATTTTGTCCCAATGGTCC 415
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 415 TACCAATGAAGATATCAAAGAATGCAATATGTACAAGCTGGGGTTTTGTCCCAATGGTCC 474
Query 416 TGATTGTCGGTACAGGCATGCAAAGCTTCCTGGACCTCCACCTCCTGTTGAGGAAGTTCT 475
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 475 TGATTGTCGGTACAGGCATGCAAAGCTTCCTGGACCTCCACCACCAGTTGAGGAAGTTCT 534
Query 476 TCAGAAGATACAACAATTGACATCATACAATTATGGGCCAAATAGGTTCTATCAACCACG 535
|||||||||||||||||||||| |||||||||||||| |||||||| |||||||| || |
Sbjct 535 TCAGAAGATACAACAATTGACAACATACAATTATGGGACAAATAGGCTCTATCAAGCAAG 594
Query 536 TAATGTTGCTCCACAGCTACAAGATAAACCTCAGGGGCAAGTTCCGACGCAAGGCCAGCC 595
||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 595 GAATGTTGCTCCACAGCTACAAGATAGACCTCAGGGGCAAGTTCCAATGCAAGGCCAGCC 654
Query 596 ACAAGAATCAGGTAACTTTCAGCAGcaacaacaacaacaacctcagcaaacacaacaCCA 655
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 655 ACAAGAATCAGGTAACTTGCAGCAGCAACAACAACAACAACCTCAGCAATCACAACACCA 714
Query 656 GGTCAGCCAGACTCAGATACCAAATCCTGCTGATCAAACAAACAGAACATCTCATCCTTT 715
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 715 GGTCAGCCAGACTCTGATACCAAATCCTGCTGATCAAACGAACAGAACATCTCATCCTTT 774
Query 716 GCCTCAAGGGGTAAATAGGTATTTTGTAGTTAAGAGTTGCAATCGAGAAAATTTTGAATT 775
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 775 GCCTCAAGGGGTAAATAGGTATTTTGTAGTTAAAAGTAACAATCGAGAAAATTTTGAATT 834
Query 776 ATCTGTGCAACAAGGTGTATGGGCTACGCAAAGGAGCAATGAATCTAAACTTAATGAAGC 835
|||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||||||
Sbjct 835 ATCTGTGCAACAAGGTGTGTGGGCAACACAAAGGAGCAATGAAGCTAAACTTAATGAAGC 894
Query 836 TTTCGACTCTGTGGAAAATGTGATCTTGATATTTTCTGTCAACAGGACCCGGCATTTCCA 895
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 895 TTTCGACTCTGTGGAAAATGTGATCTTGATATTTTCTGTCAACCGGACCCGGCATTTCCA 954
Query 896 GGGCTGTGCTAAGATGACATCAAGAATTGGTAGTTACATTGGTGGAGGAAACTGGAAACA 955
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 955 GGGGTGTGCTAAGATGACATCAAGAATTGGTGGTTACATTGGTGGAGGAAACTGGAAACA 1014
Query 956 TGAACACGGAACTGCACAGTATGGCCGGAACTTTTCAGTTAAATGGTTAAAGTTGTGCGA 1015
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGAACATGGAACTGCACAGTATGGCCGGAACTTTTCAGTTAAATGGTTAAAGTTGTGCGA 1074
Query 1016 ACTATCCTTCCACAAAACTCGGAATTTGAGGAATCCCTACAACGAAAACTTACCTGTGAA 1075
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1075 ACTATCCTTCCACAAAACTCGGAATTTGAGGAATCCTTACAACGAAAACTTACCTGTGAA 1134
Query 1076 GATAAGCAGAGACTGTCAGGAGTTAGAGCCCTCCGTCGGTGAACAGCTTGCTTCTTTGCT 1135
||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||
Sbjct 1135 GATAAGCAGAGACTGTCAGGAATTAGAGCCCTCCGTTGGTGAACAACTCGCTTCTTTGCT 1194
Query 1136 TTATCTTGAACCAGATAGCGATCTTATGGCAATCTCCATAGCTGCAGAAGCGAAACGAGA 1195
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1195 TTATCTTGAACCAGATAGCGAGCTTATGGCAATCTCCATAGCTGCAGAAGCAAAACGAGA 1254
Query 1196 AGAAGAAAAAGCGAAGGGTGTGAATCCAGAGAGCAGAGCTGAGAACCCAGACATTGTGCC 1255
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1255 AGAAGAGAAAGCAAAGGGTGTGAATCCAGAGAGTAGAGCTGAGAACCCAGACATTGTGCC 1314
Query 1256 GTTTgaagacaacgaagaagaggaagaggaagaagatgaaagtgaggaggaagaagagag 1315
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GTTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAGATGAAAGTGAGGAGGAAGAAGAGAG 1374
Query 1316 CATGGCGGGCGGTCCTCAAGGCAGAGGAAGGGGAAGAGGAATGATGTGGCCGCCTCAAAT 1375
||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1375 CATGGCGGGGGGTCCTCAAGGCAGAGGAAGAGGAAGAGGAATAATGTGGCCTCCTCAAAT 1434
Query 1376 GCCTCTAGGACGCGGAATCAGACCAATGCCTGGAATGGGAGGTTTCCCTCTTGGGGTAAT 1435
|||| ||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1435 GCCTTTAGGACGCGGAATCAGACCGATGCCTGGAATGGGAGGTTTCCCTCTCGGAGTAAT 1494
Query 1436 GGGCCCCGGCGATGCATTTCCCTATGGGCCTGGTGGATATAACGGTATGCCAGATCCATT 1495
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1495 GGGCCCTGGCGATGCATTTCCCTATGGGCCTGGTGGATATAATGGTATGCCAGATCCATT 1554
Query 1496 TGGCATGGGTCCAAGACCCTTTGGACCATATGGACCTAGGTTCGGTGTTGATTTCAGAGG 1555
||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||
Sbjct 1555 TGGCATGGGTCCAAGACCCTTTGGACCGTATGGACCGAGGTTCGGTGGTGATTTCAGAGG 1614
Query 1556 ACCAGTACCCGGGATGATGTTTCCGGGTAGACCTCCGCAACAGTTTCCACATGGCGGTTA 1615
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1615 ACCAGTACCTGGGATGATGTTTCCTGGTAGGCCTCCGCAACAGTTTCCACATGGCGGTTA 1674
Query 1616 TGGTATGATGGGAGGTGGACGTGGCCCGCATATGGGAGGAATGGGAAACGGTCCTCGAGG 1675
||||||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 1675 TGGTATGATGGGAGGCGGACGAGGCCCGCATATGGGAGGAATGGGAAACGCTCCTAGAGG 1734
Query 1676 AGGCAGGCCAATGTATTATCCACCAGCAACATCATCAGCACGTCCTGGCCCCACCAACCG 1735
||| ||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1735 AGGGAGGCCGATGTATTATCCACCAGCAACATCATCAGCACGACCTGGCCCAAGCAACCG 1794
Query 1736 GAAAACACCTGAGGGAAGCGATGAGAGAGGAGTG-GGGGCGGATCAACAAAATCAGGATA 1794
|||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1795 AAAAACACCTGAGAGAAGCGATGAGAGAGGAGTGTCGGG-GGATCAACAAAATCAGGATG 1853
Query 1795 CATCACATGACATGGAGCAGTTCGAGGTTGGAAACAGTCTGAGAAACGAAGAGAGTGAAA 1854
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1854 CATCACATGACATGGAGCAGTTCGAGGTTGGAAACAGTTTAAGAAACGAAGAGAGTGAAA 1913
Query 1855 GTGAAGACGAAGACGAAGCTCCAAGACGATCAAGACATGGAGAAGGAAAGAAGCGTCGGT 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 GTGAAGACGAAGACGAAGCTCCAAGACGATCAAGACATGGAGAAGGAAAGAAGCGTCGGT 1973
Query 1915 GAGAGAGACTCACACAACAA 1934
|||||||||| |||||||||
Sbjct 1974 GAGAGAGACTTACACAACAA 1993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95883040950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5