BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922113
Length=1187
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30510.2 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:10806... 1810 0.0
> AT1G30510.2 | Symbols: ATRFNR2, RFNR2 | root FNR 2 | chr1:10806985-10809180
REVERSE LENGTH=1510
Length=1510
Score = 1810 bits (980), Expect = 0.0
Identities = 1097/1153 (95%), Gaps = 9/1153 (1%)
Strand=Plus/Plus
Query 41 TCAGGCTGGTGCTGTCTCAGTTTCAATTGGAAACGAACGTTCTCTTAGAAGA-CCTGCCT 99
||||||||||||||||||||||||||||| |||| ||||||||||||||||| || | ||
Sbjct 217 TCAGGCTGGTGCTGTCTCAGTTTCAATTGAAAACCAACGTTCTCTTAGAAGATCC-GTCT 275
Query 100 TC-A--AGAACAATAGCATAAGCTTCAAGGGCAAGTCTTGGTCATCTTCCTTGGCACTGA 156
|| | |||||||||||||||||||||| ||||||| ||||||||||| || ||| |||
Sbjct 276 TCAAGCAGAACAATAGCATAAGCTTCAACAGCAAGTCATGGTCATCTTCTTTAGCATTGA 335
Query 157 ACCAGAAGACAACAGGCATAAGAGATGCAAAACGGTACACC-AACACGACAATATGCATG 215
|||||||||||||| |||||||||||| ||||||||| || | |||||||||||| |||
Sbjct 336 ACCAGAAGACAACAAGCATAAGAGATGGGAAACGGTAC-CCGAGCACGACAATATGTATG 394
Query 216 TCGGTTCAACAGACAAGTAGTTCCAAGGTTACTGTCTCTCCTATAGACTTGGAAGACGCT 275
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 395 TCGGTTCAACAAACAAGTAGTTCCAAGGTTACTGTCTCTCCTATAGAGTTGGAAGACCCT 454
Query 276 AAGGATCCTCCTTTGAACTTGTACAAACCCAAGGAGTCCTACACGGCTAAGATTGTCTCC 335
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 455 AAGGATCCTCCTTTGAACTTGTACAAACCCAAGGAGTCTTACACCGCTAAGATTGTCTCT 514
Query 336 GTGGAGCGAGTTGTTGGCCCAAAAGCCCCTGGAGAAACTTGTCATATCGTAATCGATCAT 395
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 515 GTGGAGCGAGTAGTTGGCCCGAAAGCCCCTGGAGAAACTTGTCATATCGTCATCGATCAT 574
Query 396 GATGGTAACCTTCCTTACTGGGAAGGGCAGAGTTACGGTGTTATTCCTCCCGGTGAGAAC 455
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 575 GATGGTAACCTTCCTTACTGGGAAGGACAGAGTTACGGTGTGATTCCTCCAGGTGAGAAC 634
Query 456 CCGAAGAAACCGGGAGCTCCACACAATGTGCGCCTTTACTCGATTGCATCAACAAGGTAC 515
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 635 CCGAAGAAACCGGGAGCGCCACACAATGTGCGCCTTTACTCAATTGCATCAACAAGGTAC 694
Query 516 GGAGATTTCTTTGACGGTAAAACAGCGAGTTTGTGTGTACGTAGAGCTGTTTATTACGAT 575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GGAGATTTCTTTGACGGTAAAACAGCGAGTTTGTGTGTACGTAGAGCTGTTTATTACGA- 753
Query 576 CCC-GAGACTGGAAAAGAAGATCCTTCAAAGAACGGAGTCTGCAGCAACTTCTTATGTGA 634
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 754 CCCTGAGACTGGAAAAGAAGATCCTTCAAAGAACGGAGTCTGCAGCAACTTCCTATGTGA 813
Query 635 TTCAAAGCCCGGAGACAAGATTCAAATCACTGGTCCATCTGGGAAGGTAATGCTATTACC 694
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 814 TTCAAAGCCCGGTGACAAGATTCAAATCACCGGTCCATCTGGGAAGGTAATGCTATTACC 873
Query 695 CGAGACTGATCCAAACGCGACACACATAATGATAGCCACGGGAACAGGAGTGGCTCCTTA 754
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 874 CGAGAGTGATCCAAACGCGACACACATAATGATAGCCACGGGAACAGGAGTGGCTCCATA 933
Query 755 CAGAGGCTACCTACGTCGAATGTTCATGGAAAACGTCCCAAACAAGACATTTAGCGGCTT 814
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 CAGAGGCTACTTACGTCGAATGTTCATGGAAAACGTCCCAAACAAGACATTTAGCGGCTT 993
Query 815 AGCTTGGCTCTTCTTAGGCGTGGCCAACACCGATAGCCTTCTCTATGACGATGAGTTTAC 874
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 994 AGCTTGGCTCTTCTTAGGCGTGGCCAACACCGATAGCCTTCTCTATGACGAAGAGTTTAC 1053
Query 875 CAAGTACTTAAAAGACCATCCAGAGAACTTTAGGTTCGACAAGGCATTGAGCAGGGAGGA 934
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1054 CAAGTACCTAAAAGACCATCCAGACAACTTTAGGTTCGACAAGGCATTGAGCAGAGAGGA 1113
Query 935 GAAGAACAAGAAAGGTGGAAAGATGTATGTGCAGGACAAGATTGAGGAGTATAGTGATGA 994
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1114 GAAGAACAAGAAAGGTGGAAAGATGTACGTGCAGGACAAGATTGAAGAATATAGTGATGA 1173
Query 995 GATCTTCAAGCTATTGGACAATGGAGCTCATATTTACTTCTGTGGGCTTAAAGGAATGAT 1054
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GATCTTCAAGCTTTTGGACAATGGAGCTCATATTTACTTCTGTGGGCTTAAAGGAATGAT 1233
Query 1055 GCCTGGGATTCAGGATACACTTAAGAGAGTTGCAGAGGAGAGAGGTGAGAGCTGGGACTC 1114
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1234 GCCTGGGATTCAAGATACACTTAAGAGAGTTGCAGAAGAGAGAGGTGAGAGCTGGGACTT 1293
Query 1115 GAAGCTTTCTCAGCTTAGGAAGAACAAGCAGTGGCACGTTGAAGTCTATTGAGCTCTTTA 1174
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GAAGCTTTCTCAGCTCAGGAAGAACAAGCAGTGGCACGTTGAAGTCTATTGAGCTCTTTA 1353
Query 1175 TTTGTTTTTGCTG 1187
||||| |||||||
Sbjct 1354 TTTGTATTTGCTG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58282832745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5