BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922121
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30560.1 | Symbols: | Major facilitator superfamily protein... 2479 0.0
AT4G25220.1 | Symbols: RHS15 | root hair specific 15 | chr4:129... 1061 0.0
> AT1G30560.1 | Symbols: | Major facilitator superfamily protein
| chr1:10824761-10826293 FORWARD LENGTH=1533
Length=1533
Score = 2479 bits (1342), Expect = 0.0
Identities = 1470/1533 (96%), Gaps = 3/1533 (0%)
Strand=Plus/Plus
Query 23 ATGGCGTCGTGGACTTCATCTGAATTCCTCTATGAAGAAGTAAAACCACCAGGTATTCAT 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGTGGACTTCATCTGAATTCCTCTATGAAGAAGTAAAACCACCAGGTATTCAT 60
Query 83 TTCCTAGAACGTTTCAAGCGTTCAGGCAAACTCTCTTTCAAGCAGTATCAAGCAATGGTC 142
|||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 TTCCTAGAACGTTTCAGGCGTTCAGGAAAACTCTCTTTCAAGCAATATCAAGCAATGGTC 120
Query 143 TTTGTCTTGACCTTCATCGCTTATATTGCCTTCCACGCAACCCGAAAGCCTAACAGCATC 202
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TTTGTCTTGACCTTCATTGCTTATATTGCCTTCCACGCAACACGAAAGCCTAACAGCATC 180
Query 203 GTCAAAGGAACGCTCTCTGAACAACCAACCGGACATTTCAAGGGGGCAGGTAAAGGTGGA 262
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 181 GTCAAAGGAACACTCTCTGAACAACCAACCGGACATTTCAAGGGTGCAGATAAAGGTGGA 240
Query 263 TGGGCTCCTTTCGATGGTCCTGATGGAACAGCTTTGCTTGGACAAATCGATTTGGCTTTC 322
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TGGGCTCCTTTCGATGGTCCAGATGGAACAGCTCTGCTTGGACAAATCGATTTGGCTTTC 300
Query 323 CTCGCTGTTTATGCGGTTGGAATGTTTGTGGCTGGTCATTTGGGTGATCGTCTGGACCTC 382
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 CTCTCTGTTTACGCGGTTGGAATGTTTGTGGCTGGTCATTTGGGTGATCGTTTGGACCTC 360
Query 383 AGGACGTTTCTAACTATAGGTATGATCGGGACAGGAGTGTGTACCGCTCTATTTGGAGTC 442
|||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 361 AGGACGTTTCTAACAATAGGTATGGTCGGGACAGGAGTGTGTACTGCTCTGTTTGGAGTC 420
Query 443 GCTTTCTGGGCAAATATCCATGCTTTCTACTATTTCCTTGCGATTCAGACATTGGCAGGT 502
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTTTTGGGCCAATATCCATGCTTTCTACTATTTCCTTGCGATTCAGACATTGGCAGGG 480
Query 503 TGGTTTCAGTCTATTGGATGGCCTTGCGTGGTGGCGGTTTTGGGGAACTGGTTTGATAAG 562
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 481 TGGTTTCAGTCTATTGGATGGCCTTGCGTGGTTGCGGTTTTGGGAAACTGGTTTGATAAG 540
Query 563 AAGAGGAGAGGAGTCATTATGGGTATTTGGAGTGCTCATACATCAATAGGGAATATCATT 622
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 541 AAGAGGAGAGGAGTCATTATGGGTGTTTGGAGTGCTCATACATCATTAGGGAATATCATT 600
Query 623 GGGACTTTAATAGCGACCGGCCTTTTAAAATTCGGTTGGGGATGGTCTTTTGTTGGTCCC 682
||||||||||| || || || ||||| || || ||||||||||||||||||||||||||
Sbjct 601 GGGACTTTAATCGCTACGGGGCTTTTGAAGTTTGGTTGGGGATGGTCTTTTGTTGGTCCG 660
Query 683 GCTTTGCTCATTACGTTTCTTGGCATTGTGATTTACCTATTCTTGCCTGTGAATCCAGTT 742
|||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 661 GCTTTGCTCATTACGTTTCTTGGCATTGTGGTTTACCTATTCTTGCCTGTGAACCCTCAT 720
Query 743 GCTGTTGAATCTGAGAGAGATGGAACTGAAGTTGATTCCACAATGAGACTCGGTGACACC 802
||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 721 GCTGTTGAAGCTGAGAGAGATGGGAGTGAAGTTGATTCCACAATGAGACTCGGTGACACC 780
Query 803 ATTACAGAGAGTTTCTTAAGCTCTAGGACGAGTACTGGATTCGATAGAAGAGCCGTCGGG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 ATTACAGAGAGTTTCTTAAGCTCTAGGACGAGTACTGGATTCGATAGAAGAGCTGTCGGG 840
Query 863 TTCTTAGCCGCATGGAAAATCCCCGGTGTTGCTCCTTTCGCCTTTTGTCTCTTCTTCACC 922
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TTCTTAGCGGCTTGGAAAATCCCCGGTGTTGCTCCTTTCGCCTTCTGTCTCTTCTTCACC 900
Query 923 AAATTGGTCTCTTACACTTTCCTCTATTGGCTTCCTTTCTATGTAAGCCAGACTGAGATA 982
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 AAACTGGTCTCTTACACATTCCTCTATTGGCTTCCTTTCTACGTAAGCCAGACTGAGATA 960
Query 983 GGAGGAGAGCATTTGTCACAAGAGACATCGGGAAACTTATCGACACTCTTCGATGTTGGA 1042
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGAGGAGAACAATTGTCACAGGAGACATCGGGAAACTTATCGACACTCTTCGATGTTGGA 1020
Query 1043 GGCGTTGTTGGAGGAATCTTAGCCGGATATTTCTCTGATCAGCTCGACGGGAGAGCAATT 1102
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 GGCGTTGTTGGAGGAATCTTAGCCGGATATTTCTCTGACCAGCTCGACGGGAGAGCAATT 1080
Query 1103 ACAGCCGGAGGATTCATCTACTTGACAATCCCAGCTCTGTTCCTCTACAGAATCTACGGT 1162
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1081 ACAGCCGGAGGATTCATCTACTTAACAATCCCAGCTCTGTTCCTCTACAGAATATACGGT 1140
Query 1163 CATGTCTCAATGACAATCAATATCATCCTCATGTTCATAGCTGGATTGTTTGTTAATGGA 1222
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1141 CATGTCTCAATGACAATCAATATCATCCTCATGTTCGTAGCTGGATTATTTGTTAATGGA 1200
Query 1223 CCTTACGCTCTCATCACAACTGCGGTTGCAGCTGATCTCGGTACTCACAAGTCGCTTAAA 1282
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CCTTACGCTCTCATCACAACCGCGGTTGCAGCTGATCTCGGTACTCACAAGTCGCTTAAA 1260
Query 1283 GGCAATGCAAGGGCTTTGGCTACAGTGACTGCTATTATAGATGGAACAGGATCAGTTGGT 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GGCAATGCAAGGGCTTTGGCTACAGTGACTGCTATTATAGATGGAACAGGATCAGTTGGT 1320
Query 1343 GCAGCTATTGGACCTGTTCTTACAGGTTATATCGCTGCGATTAGCTGGGATGCTGTGTTT 1402
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1321 GCAGCCATTGGACCTGTTCTTACAGGTTATATCGCTGCGATTAGTTGGGATGCTGTGTTT 1380
Query 1403 TACATGTTGATGACTGCGGCTTTGATCTCTGGATTGTTGCTCACTACGCTTATTATAGAA 1462
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TACATGTTGATGACTGCAGCTTTGATCTCTGGATTGTTGCTCACTACGCTTATTATAGAA 1440
Query 1463 GAAGTGAAAACTTTGTTGTATGGATCATCTGAAGAAGAT---GAAGTCGCTGCTGCTTCT 1519
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1441 GAAGTGAAAACTTTGTTGTATGGATCTTCTGAAGAAGATCATGAAGTCGCTGCTGCTTCT 1500
Query 1520 ACATCAAGACCTCCCATTGATGTCCTCATATGA 1552
|||||||||||||||||||||||||||||||||
Sbjct 1501 ACATCAAGACCTCCCATTGATGTCCTCATATGA 1533
> AT4G25220.1 | Symbols: RHS15 | root hair specific 15 | chr4:12920927-12922885
FORWARD LENGTH=1750
Length=1750
Score = 1061 bits (574), Expect = 0.0
Identities = 1199/1496 (80%), Gaps = 61/1496 (4%)
Strand=Plus/Plus
Query 14 GCTAAAGACATGGCGTCGTGGACTTCATCTGAATTCCTCTATGAAGAAGTAAAACCACCA 73
||| |||| |||||||| ||||||||||| | ||||| ||||||||| || |||
Sbjct 104 GCTTAAGAGATGGCGTCATGGACTTCATCCCAGTTCCTGTATGAAGAAACCAAGCCATGG 163
Query 74 GGTATTCATTTCCTAG-AACGTTTCAAGCGTTCAGGCAA-ACTCTCTTTCAAGCAGTATC 131
|||||||| ||| | | || |||| ||||||||||| || |||||| |||||||| || |
Sbjct 164 GGTATTCAGTTCTTGGAAAAGTTT-AAGCGTTCAGG-AAGACTCTCCTTCAAGCAATACC 221
Query 132 AAGCAATGGTCTTTGTCTTGACCTTCATCGCTTATATTGCCTTCCACGCAACCCGAAAGC 191
|||| | ||||| | |||||||| |||| || || |||||||| || |||||||||
Sbjct 222 AAGCCCTTGTCTTCATTTTGACCTTTGTCGCCTACATCGCCTTCCATGCTGCCCGAAAGC 281
Query 192 CTAACAGCATCGTCAAAGGAACGCTCTCTGAACAACCAACCGGACATTTCAAGGGGGCAG 251
| || ||||| ||||| ||||| || |||| | | ||| | | | | |
Sbjct 282 CCAATAGCATTGTCAAGGGAACACTTTCTG--C-ATCAA-C--A-A--T--------C-- 322
Query 252 GTAAAGGTGGATGGGCTCCTTTCGATGGTCCTGATGGAACAGCTTTGCTTGGACAAATCG 311
| |||| || ||||||||||| ||||| |||||||||||||| |||||||| || ||||
Sbjct 323 G--AAGGCGGTTGGGCTCCTTTTGATGGACCTGATGGAACAGCCTTGCTTGGGCAGATCG 380
Query 312 ATTTGGCTTTCCTCGCTGTTTATGCGGTTGGAATGTTTGTGGCTGGTCATTTGGGTGATC 371
| |||||||||||| |||| ||||||||||| ||||||||||| ||||| ||||| ||||
Sbjct 381 ACTTGGCTTTCCTCTCTGTCTATGCGGTTGGGATGTTTGTGGCAGGTCACTTGGGCGATC 440
Query 372 GTCTGGACCTCAGGACGTTTCTAACTATAGGTATGATCGGGACAGGAGTGTGT-ACCGCT 430
|| |||| |||||||||||||| || || |||||||||||||| || | | | || |||
Sbjct 441 GTTTGGATCTCAGGACGTTTCTGACCATCGGTATGATCGGGACCGGCCT-TTTCACAGCT 499
Query 431 CTATTTGGAGTCGCTTTCTGGGCAAATATCCA-TGCTTTCTACTATTTCCTT-GCGATTC 488
|| || || ||||| |||||||| ||| |||| || ||||||||||| ||| ||| |||
Sbjct 500 CTCTTCGGGGTCGCATTCTGGGCGAATTTCCACAGC-TTCTACTATTT-CTTGGCGGTTC 557
Query 489 A-GACATTGGC-AGGTTGGTTTCAGTCTATTGGATGGCCTTGCGTGGTGGCGGTTTTGGG 546
| | | |||| |||| ||||||||| || || |||||||| | ||||| || | ||
Sbjct 558 AGGTTA-TGGCGGGGTT-GTTTCAGTCGATAGGTTGGCCTTGTATCGTGGCTGTGCTCGG 615
Query 547 GAACTGGTTTGATAAGAAGAGGAGAGGAGTCATTATGGGTATTTGGAGTGCTCATACATC 606
||| ||||| || |||||||| |||||| | ||||||||| ||||||| ||||| || ||
Sbjct 616 GAATTGGTTCGACAAGAAGAGAAGAGGAATGATTATGGGTGTTTGGAGCGCTCACACTTC 675
Query 607 AATAGGGAATA-T-CATTGGGACTTTAATAGCGACCGGCCT-TTTAAAAT-TCGGTTGGG 662
| || || | | || ||| || | || ||| | || || || | || | || ||||
Sbjct 676 CCTCGGTAACATTGCA--GGGTCTCTGATCGCGTCTGGGCTGCTT-AGATAT-GGGTGGG 731
Query 663 GATGGTCTTTTGTTGGTCCC-GCTTTGCTCATTACGTTTCTTGGCATTG-TGATTTACCT 720
| ||||| ||| |||| ||| ||||| ||||| || |||||||| || | || |||||||
Sbjct 732 GTTGGTCATTTCTTGG-CCCGGCTTTTCTCATGACTTTTCTTGGGATCGTTG-TTTACCT 789
Query 721 ATTCTTGCCTGTGAATCCAGTTGCTGTTGAATCTGAGAGAGATGGAACTGAAGTTGATTC 780
|||||||| |||||||| | ||||| | |||||||||||||||||| |||| ||
Sbjct 790 TTTCTTGCCGGTGAATCCTCCAACCGTTGAGGCAGAGAGAGATGGAACTGAAATTGACTC 849
Query 781 CACAATGAGACTCGGTGACACCATTACAGAGAGTTTCTTAAG-CTCTAGGACGAGTACTG 839
|| ||||| ||||||||||||||||||||||| || || | ||||| | ||||||||
Sbjct 850 TACCATGAGGCTCGGTGACACCATTACAGAGAGCTTATT-GGAATCTAGAATGAGTACTG 908
Query 840 GATTCGATAG-AAGAGCCGTCGGGTTCTTAGCCGCATGGAAAATCCCCGGTGTTGCTCCT 898
|||||||||| ||| || ||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 909 GATTCGATAGAAAG-GCAGTCGGGTTCATGGCCGCTTGGAAAATCCCCGGTGTTGCTCCT 967
Query 899 TTCGCCTTTTGTCTCTTCTTCACCAAA-TTGGTCTCTTACACTTTCCTCTATTGGCTTCC 957
|||||||| || ||||||||||| ||| |||||||| |||||||||||||| ||||||||
Sbjct 968 TTCGCCTTCTGCCTCTTCTTCAC-AAAGTTGGTCTCATACACTTTCCTCTACTGGCTTCC 1026
Query 958 TTTCTATGTAAGCCAGA-C-TGAGATAGGAGGAGAGCATTTGTCACAAGAGACATCGGGA 1015
|||||| || ||||| | | ||| | ||||||||| | ||||| | |||||||| |||
Sbjct 1027 TTTCTACGTCAGCCACAACATGA--TCGGAGGAGAGTACCTGTCAGAGGAGACATCAGGA 1084
Query 1016 AACTTATCGACACTCTTCGATGTTGGAGGCGTTGTTGGAGGAATCTTAGCCGGATATTTC 1075
||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
Sbjct 1085 AACTTGTCGACAATCTTCGATGTTGGAGGCGTTGTTGGTGGAGTCTTAGCCGGATACATA 1144
Query 1076 TCTGATCAGCTCGACGGGAGAGCAATTACAGCCGGAGGATTCATCTACTTGACAATCCCA 1135
|||||||| ||| |||| ||||| || ||||| | ||||||||| |||||| | ||||||
Sbjct 1145 TCTGATCAACTCAACGGCAGAGCCATCACAGCAGCAGGATTCATGTACTTGGCCATCCCA 1204
Query 1136 GCTCTGTTCCTCTACAGAATCTACGGTCATGTCTCAATGACAATCAATATCATCCTCATG 1195
||||| |||||||||||| ||| || || ||||| |||| |||||| |||||||||||
Sbjct 1205 GCTCTTTTCCTCTACAGAGTCTTTGGACACATCTCATTGACCATCAATGTCATCCTCATG 1264
Query 1196 TTCATAGCTGGATTGTTTGTTAATGGACC-TTACGCTCTCATCACAACTGCGGT-TGCAG 1253
|||| | | ||| | || | | |||||| || |||||||||||||| || || | |||
Sbjct 1265 TTCACATCAGGAGTCTTCATCATTGGACCATTT-GCTCTCATCACAACAGCTGTCT-CAG 1322
Query 1254 CTGATCTCGGTACTCACAAGTCGCTTAAAGGCAATGCAAGGGCTTTGGCTACAGTGACTG 1313
|||||||||| || ||||| || || ||||||||||||||||||||||||||||| | |
Sbjct 1323 CTGATCTCGGAACCCACAAATCTCTCAAAGGCAATGCAAGGGCTTTGGCTACAGTCTCAG 1382
Query 1314 CTATTATAGATGGAACAGGATCAGTTGGTGCAGCTATTGGACCTGTTCTTACAGGTTATA 1373
|||| ||||| || |||||||| || ||||| || |||||||| || || || ||||| |
Sbjct 1383 CTATCATAGACGGCACAGGATCCGTCGGTGCTGCGATTGGACCAGTCCTCACTGGTTACA 1442
Query 1374 TCGCTGCGATTAGCTGGGATGCTGTGTTTTACATGTTGATGACTGCGGCTTTGATCTCTG 1433
|| |||| || |||||||| || ||||||||||||||||||||||| || ||||||||||
Sbjct 1443 TCTCTGCCATAAGCTGGGACGCAGTGTTTTACATGTTGATGACTGCAGCATTGATCTCTG 1502
Query 1434 GATTGTTGCTCACTACGCTTATTATAGAAGAAGTGAAAACTTTGTTGTATGGATCA 1489
||||||||||||||| || || |||| |||||| ||| | || |||| |||||||
Sbjct 1503 GATTGTTGCTCACTAAACTAATCATAGCAGAAGTCAAAGCGTTATTGTTTGGATCA 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5