BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922123
Length=1228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30580.1 | Symbols: | GTP binding | chr1:10831673-10835538 ... 2134 0.0
> AT1G30580.1 | Symbols: | GTP binding | chr1:10831673-10835538
REVERSE LENGTH=1549
Length=1549
Score = 2134 bits (1155), Expect = 0.0
Identities = 1199/1221 (98%), Gaps = 0/1221 (0%)
Strand=Plus/Plus
Query 1 TCAAGCTCGACACTTTGAGAAAGATGCCTCCGAAAGCCAAAGCTAAAGATGCAGGTCCCG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 TCAAGCTCGAGACTTTGAGAAAGATGCCTCCGAAAGCCAAAGCTAAAGATGCAGGTCCCG 121
Query 61 TAGAGAGGCCTATTCTTGGCCGTTTCTCTTCTCACCTCAAGATCGGAATTGTTGGGTTAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TAGAGAGGCCTATTCTTGGCCGTTTCTCTTCTCACCTCAAGATCGGAATTGTTGGGTTAC 181
Query 121 CAAATGTTGGAAAATCTACTCTTTTCAACACTCTTACAAAGCTTTCTATTCCAGCTGAGA 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 182 CAAATGTTGGAAAATCTACTCTTTTCAACACTCTTACAAAGCTTTCAATTCCAGCTGAGA 241
Query 181 ATTTTCCCTTTTGTACCATTGAGCCTAATGAGGCACGTGTGAATATCCCCGATGAGAGGT 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATTTCCCCTTTTGTACCATTGAGCCTAATGAGGCACGTGTGAATATCCCCGATGAGAGGT 301
Query 241 TCGATTGGCTTTGCCAAACTTACAAGCCTAAGAGTGAGATTCCAGCTTTCTTGGAAATTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TCGATTGGCTTTGCCAAACTTACAAGCCTAAGAGTGAGATTCCAGCTTTCTTGGAAATTC 361
Query 301 ATGACATTGCTGGGCTTGTTAGAGGAGCTCATGAAGGACAGGGTCTTGGAAACAACTTCT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ATGACATTGCTGGGCTTGTTAGAGGAGCTCATGAAGGACAGGGTCTTGGAAACAACTTCT 421
Query 361 TGTCTCATATTCGTGCAGTTGATGGAATTTTCCATGTCTTACGTGCTTTCGAAGATGCTG 420
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 422 TGTCCCATATTCGTGCAGTTGATGGAATTTTCCATGTTTTACGTGCTTTTGAAGATGCTG 481
Query 421 ATATTATCCATGTTGATGATGTCGTGGATCCTGTTAGAGATTTGGAGACCATTACTGAAG 480
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 482 ATATTATCCATGTCGACGATATCGTGGATCCTGTTAGAGATTTGGAGACCATTACTGAAG 541
Query 481 AGTTGCGGCTAAAGGATATTGAATTCGTTGGAAAGAAGATTGATGATGTCGAGAAGAGCA 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 AGTTGCGGCTAAAGGATATTGAATTTGTTGGAAAGAAGATTGATGATGTCGAGAAGAGCA 601
Query 541 TGAAGAGGAGCAATGACAAGCAGCTAAAAATAGAACTTGAGCTCTTGCAAAAGGTAAAAG 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 602 TGAAGAGGAGCAATGACAAGCAGCTGAAAATAGAACTTGAGCTCTTGCAAAAGGTAAAAG 661
Query 601 CTTGGCTAGAAGATGGAAAGGATGTCCGTTTTGGGGACTGGAAAACAGCTGATATCGAGA 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 CTTGGCTAGAAGATGGTAAGGATGTCCGTTTTGGGGACTGGAAAACAGCTGATATCGAGA 721
Query 661 TTTTGAACACTTTCCAATTGCTTTCTGCAAAGCCCGTTGTTTACTTGATTAACATGAATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 722 TTTTGAACACTTTCCAATTGCTTTCTGCAAAGCCCGTTGTTTACTTGATTAACCTGAATG 781
Query 721 AGAGAGACTATCAGAGGAAGAAAAACAAGTTCTTGCCAAAGATTCATGCCTGGGTTCAAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGAGAGACTATCAGAGGAAGAAAAACAAGTTCTTGCCAAAGATTCATGCCTGGGTTCAAG 841
Query 781 AACACGGTGGTGATACTATGATTCCTTTCAGTGGTGTGTTTGAAAGGAGTCTCGCTGATA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AACACGGTGGTGATACTATGATTCCTTTCAGTGGTGTGTTTGAAAGGAGTCTCGCTGATA 901
Query 841 TGGCCCCAGATGAAGCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TGGCCCCAGATGAAGCAGCAAAGTATTGTGAGGAGAACAAACTGCAAAGTGCTCTTCCGA 961
Query 901 GGATCATCAAAACTGGATTTTCAGCGATTAACCTCATATATTTCTTTACAGCTGGGCCTG 960
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 962 GGATCATCAAAACTGGATTTTCAGCAATTAACCTCATATACTTCTTTACAGCAGGGCCTG 1021
Query 961 ATGAGGTGAAGTGCTGGCAAATACGACGGCAGTCAAAGGCTCCTCAAGCTGCAGGGGCCA 1020
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1022 ATGAGGTGAAGTGCTGGCAAATAAGACGGCAGTCAAAGGCTCCTCAAGCTGCAGGGGCCA 1081
Query 1021 TTCATACTGATTTCGAGAGAGGATTTATTTGTGCTGAGGTCATGAAATTTGAGGATCTCA 1080
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1082 TTCATACTGATTTTGAGAGAGGATTTATTTGTGCTGAGGTCATGAAATTCGAGGATCTCA 1141
Query 1081 AGGAACTTGGCAATGAACCTGCAGTCAAGGCCGCAGGAAAATACAGACAGGAGGGCAAGA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1142 AGGAACTTGGCAATGAACCTGCAGTCAAGGCCGCAGGAAAATACAGACAGGAGGGTAAAA 1201
Query 1141 CATATGTTGTTCAGGATGGAGATATCATTTTCTTCAAGTTCAATGTTTCCGGTGGTGGGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CATATGTTGTTCAGGATGGAGATATCATTTTCTTCAAGTTCAATGTTTCCGGTGGTGGGA 1261
Query 1201 AGAAATGAGATCCATCTGTCT 1221
|||||||||||||||| ||||
Sbjct 1262 AGAAATGAGATCCATCCGTCT 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60341055090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5