BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922132
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30650.1 | Symbols: WRKY14, ATWRKY14, AR411 | WRKY DNA-bindi... 1921 0.0
> AT1G30650.1 | Symbols: WRKY14, ATWRKY14, AR411 | WRKY DNA-binding
protein 14 | chr1:10868303-10871297 FORWARD LENGTH=1926
Length=1926
Score = 1921 bits (1040), Expect = 0.0
Identities = 1240/1335 (93%), Gaps = 20/1335 (1%)
Strand=Plus/Plus
Query 1 ATCGTCGTCATTTATAGATTATGTGCAGCGTCTCTGAGCTTCTTGACATGGAAAACTTTC 60
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 290 ATCATCGTCATATATAGATTATGTGCAGCGTCTCTGAGCTTCTTGACATGGAAAACTTCC 349
Query 61 AAGGAGACTTAACCGACGTTGTACGAGGAATCGGAGGCCACGTGTTATCACCGGAAACTC 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 350 AAGGAGACTTAACCGACGTCGTACGAGGAATCGGAGGCCACGTGTTATCACCGGAGACTC 409
Query 121 CT-CCTCCGAACATCTGGCCTCTTCCACTGCCGCATCCACCACCATCGCCGTCAGATCTT 179
|| ||| ||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||
Sbjct 410 CTCCCT-CGAACATCTGGCCTCTTCCTCTGTCACATCCAACACCATCACCGTCAGATCTT 468
Query 180 CACATAAACCCCTTTGGAGATCCCTTTGTGAGCATGAACGATCCTCTCCTCCAAGAACTC 239
||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 469 AACATAAACCCCTTCGGAGATCCCTTTGTGAGCATGGACGATCCACTCCTCCAAGAACTA 528
Query 240 AACTCCGTCACAAACTCCAGCTATTTCTCGAACGCCGGAGAT------AACAACA---AC 290
|||||| ||||||||||| |||||||||| | || |||||| ||||||| ||
Sbjct 529 AACTCCATCACAAACTCCGGCTATTTCTCCACCGTAGGAGATAACAACAACAACATTCAC 588
Query 291 AACAATAATGGTTTCTTGGTTCCTAAGGTATTTGAGGAGGATCATATAAAGAGTCAATGT 350
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 589 AACAACAATGGTTTCTTGGTTCCAAAGGTATTTGAGGAGGATCATATAAAGAGTCAATGT 648
Query 351 AGTATCTTCCCAAGAATCCGGATCTCGCATAGTAACATCATCCATGATTCTTCTCCGTGT 410
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 649 AGTATCTTCCCAAGAATCCGGATCTCGCATAGTAACATCATCCACGATTCTTCTCCGTGT 708
Query 411 AATTCTCCGGCCATGTCGGCTCACGTTGTCGCAGCCGCAGCTGCCGCCTCGCCGAGAGGG 470
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 709 AATTCTCCGGCCATGTCGGCTCACGTTGTCGCAGCCGCAGCAGCCGCCTCGCCGAGAGGC 768
Query 471 ATCATCAACGTAGACACAAACAGTCCTAGAAACTGTCTATTGGTCGATGGTAACACGTTC 530
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 769 ATCATCAACGTAGACACAAACAGTCCTAGAAACTGTCTATTGGTTGATGGTACCACGTTC 828
Query 531 TCGTCGCAGATTCAGATATCTTCCCCTCGGAATCTAGGCCTTAAAAGAAGGAAGAGTCAG 590
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TCCTCGCAGATTCAGATATCTTCCCCTCGGAATCTAGGCCTTAAAAGAAGGAAGAGTCAG 888
Query 591 GCAAAGAAGGTGGTGTGTATACCGGCGCCGGCTGCAATGAACAGCCGATCAAGCGGAGAA 650
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 889 GCAAAGAAGGTGGTGTGTATTCCGGCCCCGGCTGCAATGAACAGCCGATCAAGCGGAGAA 948
Query 651 GTGGTTCCGTCTGATCTATGGGCTTGGCGTAAGTACGGTCAGAAACCCATCAAAGGCTCT 710
|||||||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 949 GTGGTTCCATCGGATCTATGGGCTTGGCGTAAATACGGTCAAAAACCTATCAAAGGCTCT 1008
Query 711 CCTTTTCCAAGGGGTTACTATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAA 770
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CCTTTTCCAAGGGGTTATTATAGATGCAGCAGCTCAAAAGGTTGTTCAGCAAGAAAGCAA 1068
Query 771 GTCGAAAGGAGCCGAACCGATCCTAACATGTTGGTGATTACATATACCTCCGAACATAAC 830
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1069 GTCGAAAGAAGCCGAACCGATCCAAACATGTTGGTGATTACATATACCTCCGAACATAAC 1128
Query 831 CATCCTTGGCCCATTCAACGCAACGCTCTCGCTGGCTCCACACGctcctcctcctcctcc 890
|||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1129 CATCCTTGGCCCATCCAACGCAACGCTCTCGCCGGCTCCACACGCTCCTCCACCTCCTCC 1188
Query 891 tc-T--AACCCTAATCCTTCCAAACCCTCAACCGCAAACATAACCTCATCATCCATTGGC 947
|| | ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 1189 TCATCTAACCCTAATCCTTCCAAACCCTCAACCGCAAACGTAAACTCCTCATCCATTGGC 1248
Query 948 TCCCAAAACACCATATATTTGTCTTCCTCCACCATTCCTCCTCCTTCTCTCTCATCCTCC 1007
|||||||||||||| || ||| |||||||||||| |||||||||| | ||||||||||||
Sbjct 1249 TCCCAAAACACCATCTACTTGCCTTCCTCCACCACTCCTCCTCCTACCCTCTCATCCTCC 1308
Query 1008 GCCGTTAAAGATGAACGAGAGGACGACATGCAGTTAGAAAACATAGAAGACGATGAGGAT 1067
||| | ||||||||||||| |||||| ||| |||| |||||| |||| || ||||| |||
Sbjct 1309 GCCATCAAAGATGAACGAGGGGACGATATGGAGTTGGAAAACGTAGATGATGATGATGAT 1368
Query 1068 AATCAGATTGCTCCGTATATACCGGAGCTTCATGATCATCAGCACCAGCCAGATGATTTC 1127
|| ||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1369 AACCAGATTGCTCCATACAGACCGGAGCTTCATGATCATCAGCACCAACCAGATGATTTC 1428
Query 1128 TTCGCAGATCTTGAAGAGCTAGAAGGAGATTCTCTAAGCATGTTGCTTTCTCAAGGCTGC 1187
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1429 TTTGCAGATCTTGAAGAGCTAGAAGGAGATTCTCTAAGCATGTTGCTTTCTCATGGCTGT 1488
Query 1188 ACCGGCGACGGTAAAGATAAAACGACCGCGTCCGATGGGATCAGCAATTTCTTCGGCTGG 1247
||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1489 GGCGGCGACGGGAAGGATAAAACGACCGCGTCCGATGGGATCAGCAATTTCTTCGGGTGG 1548
Query 1248 TCGGGAGATAATAATGATAAT--T-ACGACGACCAAGACTCAAGGTCGTTATAGATATAT 1304
||||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 1549 TCGGGAGATAATAATTATAATAATTACGACGACCAAGACTCAAGGTCGTTATAG-TATA- 1606
Query 1305 AGTGTTAATTACAGG 1319
||||||||||||||
Sbjct 1607 -GTGTTAATTACAGG 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64909304685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5