BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922138
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30700.1 | Symbols: | FAD-binding Berberine family protein ... 2473 0.0
> AT1G30700.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10892570-10894572 FORWARD LENGTH=1772
Length=1772
Score = 2473 bits (1339), Expect = 0.0
Identities = 1533/1629 (94%), Gaps = 4/1629 (0%)
Strand=Plus/Plus
Query 1 TTTCGACGTTCAATCTCTAAAAATGAAATATACATTGATTCTTTTTCTCTTTTTCGTTGT 60
|||| ||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||
Sbjct 32 TTTCAACGTTCAATCTCTGAAAATGAAATATGCATTGATTCTTGTTCTCTTTTTTGTTGT 91
Query 61 CTTCATATGGCAATCAAGCTCATCATCAGCAAACTCGGAGACTTTCACACAATGCCTTAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 92 CTTCATATGGCAATCAAGCTCATCATCAGCAAACTCGGAGACTTTCACACAATGCCTAAC 151
Query 121 CTCAAACTCCGACCCCAAACATCCCATCTCCCCCGCTATCTTCTTCGCCGGAAACCGCTC 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 152 CTCAAACTCCGACCCCAAACATCCCATCTCCCCCGCTATCTTCTTCTCCGGAAATGGCTC 211
Query 181 CTACTCCTCCGTATTACAAGCCAACATCCGTAACCTCCGCTTCAACACCTCCTCCACTCC 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 212 CTACTCCTCCGTATTACAAGCCAACATCCGTAACCTCCGCTTCAACACCACCTCAACTCC 271
Query 241 CAAACCCTTCCTCATAATCGCCGCAACACATGAATCCCATGTGCAAGCCGCGGTTACTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 272 GAAACCCTTCCTCATAATCGCCGCAACACATGAATCCCATGTGCAAGCCGCGATTACTTG 331
Query 301 CGGCAAACGCCACAACCTTCAGATGAAAATCAGAAGCGGAGGCCACGACTACGACGGCTT 360
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 332 CGGGAAACGCCACAACCTTCAGATGAAAATCAGAAGTGGAGGCCACGACTACGATGGCTT 391
Query 361 GTCATACGTTACGTACTCTCGCAAACCGTTCTTCGTCCTTGACATGTTTAATCTTCGGTC 420
|||||||||||| |||||| ||||||||||||||||||| ||||||||||| || || ||
Sbjct 392 GTCATACGTTACATACTCTGGCAAACCGTTCTTCGTCCTCGACATGTTTAACCTCCGTTC 451
Query 421 CGTTGATGTTGACGTGGCGAGTAAAACCGCGTGGGTCCAAACCGGTGCCATTCTTGGAGA 480
|| ||||| |||||||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 452 GGTGGATGTCGACGTGGCAAGTAAGACCGCGTGGGTCCAAACCGGTGCCATACTCGGAGA 511
Query 481 AGTTTATTACTATATATGGGAGAAGAGCAAAACCCTAGCTTATCCCGCTGGGATTTGTCC 540
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 512 AGTTTATTACTATATATGGGAGAAGAGCAAAACCCTAGCTTATCCCGCCGGAATTTGTCC 571
Query 541 GACAGTTGGTGTCGGCGGCCATATTAGCGGTGGAGGTTACGGTAACATGATGAGAAAATA 600
|| ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 572 CACGGTTGGTGTCGGTGGCCATATCAGTGGTGGAGGTTACGGTAACATGATGAGAAAATA 631
Query 601 CGGTCTCACCGTAGATAATACCATCGATGCAAGAATGGTCGACGTCAATGGAAAAATTTT 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 632 CGGTCTCACCGTAGATAATACCATCGATGCAAGAATGGTCGACGTAAATGGAAAAATTTT 691
Query 661 GGATAGAAAATTGATGGGAGAAGATCTCTATTGGGCAATAAACGGAGGAGGAGGAGGAAG 720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 692 GGATAGAAAATTGATGGGAGAAGATCTCTACTGGGCAATAAACGGAGGAGGAGGAGGGAG 751
Query 721 CTACGGAGTCGTTTTGGCCTACAAAATAAACCTCGTCGAAGTCCCTGAAAACGTCACCGT 780
|||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 752 CTACGGCGTCGTATTGGCCTACAAAATAAACCTTGTTGAAGTCCCAGAAAACGTCACCGT 811
Query 781 TTTCAGAATCTCCCGGACGTTAGAGCAAAACGCGACGGAGATTGTTAACCGGTGGCAACG 840
|||||||||||||||||||||||| ||||| |||||||| || || ||||||||||||
Sbjct 812 TTTCAGAATCTCCCGGACGTTAGAACAAAATGCGACGGATATCATTCACCGGTGGCAACA 871
Query 841 AGTCGCACCGGAGCTTCCCGACGAGCTCTTCATAAGAACAATCATCGACGTAGTAAACAG 900
||| |||||| |||||||||||||||| |||||||||||| |||| |||||||||||| |
Sbjct 872 AGTTGCACCGAAGCTTCCCGACGAGCTTTTCATAAGAACAGTCATTGACGTAGTAAACGG 931
Query 901 CACCGTTTCATCTCAAAAGACCGTCAGGGCAACATTCATAGCTATGTTTCTTGGAGACAC 960
||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 932 CACTGTTTCATCTCAAAAGACCGTCAGGACAACATTCATAGCAATGTTTCTAGGAGACAC 991
Query 961 AACAACGCTTCTGTCGATATTAAACCGGAGATTCCCAGAATTGGGTTTGGTCCGGTCTGA 1020
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GACAACTCTACTGTCGATATTAAACCGGAGATTCCCAGAATTGGGTTTGGTCCGGTCTGA 1051
Query 1021 CTGTACCGAAACGAGTTGGATCCAATCTGTGCTATTCTGGACGAATATCCAAGTGGGTTC 1080
|||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1052 CTGTACCGAAACAAGCTGGATCCAATCTGTGCTATTCTGGACAAATATCCAAGTTGGTTC 1111
Query 1081 GTCGGAGAAAC-TCTTACTCCAAAGGAATCAACCCGTGAACTACCTCAAGAGGAAATCAG 1139
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GTCGGAGACACTTC-TACTCCAAAGGAATCAACCCGTGAACTACCTCAAGAGGAAATCAG 1170
Query 1140 ATTACGTACGTGAACCGATTTCAAGAACCGGTTTAGAGTCGATTTGGAAGAAAATGATCG 1199
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1171 ATTACGTACGTGAACCGATTTCAAGAACCGGTTTAGAGTCAATTTGGAAGAAAATGATCG 1230
Query 1200 AGCTTGAAATTCCGACAATGGCTTTCAATCCATACGGTGGTGCA-ATGGGGAGGATATCA 1258
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1231 AGCTTGAAATTCCGACAATGGCTTTCAATCCATACGGTGGTG-AGATGGGGAGGATATCA 1289
Query 1259 TCGACGGTGACTCCGTTCCCATACAGAGCCGGGAATCTTTGGAAGATTCAGTACGCAGCG 1318
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct 1290 TCTACGGTGACTCCGTTCCCATACAGAGCCGGTAATCTCTGGAAGATTCAGTACGGTGCG 1349
Query 1319 AATTGGAGAGAAGATAGGTTAACCGACCGGTACATGGAATTGACGAGGAAGTTGTACCAA 1378
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 AATTGGAGAGATGAGACTTTAACCGACCGGTACATGGAATTGACGAGGAAGTTGTACCAA 1409
Query 1379 TTCATGACACCATTTGTTTCCAAGGATCCGAGACAGTCGTTTTTCAATTATCGTGATGTT 1438
|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct 1410 TTCATGACACCATTTGTTTCCAAGAATCCGAGACAATCGTTTTTCAATTACCGTGATGTT 1469
Query 1439 GATTTGGGGATTAATTCTCATAATGGTAAAATGAGTAGCTACGTTGAAGGTAAGCGTTAC 1498
|||||||| ||||||||||||||||||||||| ||||| || || |||||||| ||||||
Sbjct 1470 GATTTGGGTATTAATTCTCATAATGGTAAAATCAGTAGTTATGTGGAAGGTAAACGTTAC 1529
Query 1499 GGGAAGAAATATTTCGCAGGTAATTTCGAGAGATTGGTGAAGATTAAGACGAGAGTTGAT 1558
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 GGGAAGAAGTATTTCGCAGGTAATTTCGAGAGATTGGTGAAGATTAAGACGAGAGTTGAT 1589
Query 1559 CGTGGTAATTTCTTTAGGAATGAACAGAGTATTCCTGTGTTACCATAAGTGTATTTATTT 1618
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1590 AGTGGTAATTTCTTTAGGAACGAACAGAGTATTCCTGTGTTACCATAAGTGTATTTATTT 1649
Query 1619 GATAATTGG 1627
||| |||||
Sbjct 1650 GATTATTGG 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5