BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922139
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30710.1 | Symbols: | FAD-binding Berberine family protein ... 2608 0.0
AT1G34575.1 | Symbols: | FAD-binding Berberine family protein ... 1583 0.0
AT1G30700.1 | Symbols: | FAD-binding Berberine family protein ... 78.7 2e-13
> AT1G30710.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10895280-10897109 FORWARD LENGTH=1830
Length=1830
Score = 2608 bits (1412), Expect = 0.0
Identities = 1553/1622 (96%), Gaps = 6/1622 (0%)
Strand=Plus/Plus
Query 21 ATGGCATCTCTAACAACTCAAACCCTAATCATCACCATTTTTCTTCTCGCAATCCCAAGA 80
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1 ATGACATCTCTAACAACTCAAACCCTAATCATCACCATTTTTCTTCTTACAATCCCAACA 60
Query 81 TCATTCGCATCACCACCATCACTCGAAGACGTTTTCGCACAATGC-TTAGCTGATTTTAA 139
|| |||||||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 61 TCCTTCGCATCACCACCATCACTCGAAGACGTTTTCGCACAATGCGTCA-CCGATTTTAA 119
Query 140 ACCTTCAAATCCAAAATCCCCAATCCAAAACTTCATCTACACTCAACAAAGCCCTAATTT 199
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 120 ACCTTCAAATCCAAAATCCCCAATCCAAAACTACATATACACTCAACGAAGCCCTAATTT 179
Query 200 CCTCACAATCCTTAACAATTACGTCCGTAATCTTCGTTACTTCAACAACACGACACGTAA 259
|||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 180 CCTCACAATCCTTAACAACTACGTCCGTAACCTTCGTTACTTCAACAACATGACACGTAA 239
Query 260 ACCCGTCGCGATTGTAGCTGCGGCGGATGTCACTCACATCCAGGCTACAATCACTTGCGC 319
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 240 ACCCGTAGCGATTGTAGCTGCCGCGGATGTCACTCACATCCAGGCTACAATCACTTGTGC 299
Query 320 CAAGAATCTCGGCCTCCAGCTCCGGATACGCAGCGGAGGCCATGACTACGACGGTATGTC 379
|||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 300 CAAGAAACTCGGCCTCCAGCTCCGGATCCGCAGTGGAGGACATGACTACGACGGTATGTC 359
Query 380 GTATTTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGTCTATCAATAT 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTATTTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGTCTATCAATAT 419
Query 440 AGATCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAGATCTACTA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGATCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAGATCTACTA 479
Query 500 CGGAGTCGCCAACAAAAGCAATGATCTTCGTGGATTTCCTGCCGGAATCTGCCCTGGTTT 559
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 480 CGGAGTCGCCAACAAAAGCAATGACCTCCGTGGATTTCCTGCCGGAATCTGTCCTGGTTT 539
Query 560 AGGCGCTGGTGGACATTTTAGCGGTGGCGGTTATGGAAACATGATGAGGAAATACGGTTT 619
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 540 AGGCGCTGGTGGACATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTT 599
Query 620 ATCGATCGATAACATTATAGACGCTAAGATCGTTGACGCTAAAGGAAGAGTCTTGGACCG 679
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 ATCGATCGATAACATTATAGACGCTAAGATCGTTGACGCTAAAGGAAGAGTTTTGGACCG 659
Query 680 GAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCCGCTAGTTTCTG 739
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 GAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCTGCTAGTTTCTG 719
Query 740 TGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTGCC-GACTAAAGTCACAGTCTTCA 798
|||||||||||||||||||||||||||||||||||| || | |||||||||||||||| |
Sbjct 720 TGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTTCCAG-CTAAAGTCACAGTCTTTA 778
Query 799 ACGTTGAAACGGTTGGAAACAGAGGAAGTGTGAACATCACGGAACTTGTAACCAAATGGC 858
|| |||||||| ||||||||| |||||| ||||||| ||||||||||||| |||||||||
Sbjct 779 ACATTGAAACGTTTGGAAACACAGGAAGCGTGAACACCACGGAACTTGTAGCCAAATGGC 838
Query 859 AAGAGATCGCAGACAAGATCGACAACGATCTGTTCATAAGATTAACTTTAGGCTCAAGCA 918
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 AAGAGATCGCAGACAAGATTGACAATGATCTGTTCATAAGATTAACTTTAGGCTCAAGCA 898
Query 919 ACAAAACCGTGAAGGCTTCTTTCATGGGAATGTACCTCGGAAACTCATCGAAGCTTCTAG 978
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 ACAAAACCGTGAAGGCTTCTTTCATGGGAATGTACCTCGGAAACTCATCGAATCTTCTAG 958
Query 979 AAATCATGAACGCGAAATTCCCTGAGCTTGGTCTGAACAAAACAGAGTGTATAGAAATGA 1038
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 959 AAATCATGAACGCGAAATTCCCTGAGCTTGGTCTGATCAAAAGAGAGTGTATTGAAATGA 1018
Query 1039 AATGGATCGAATCGGTTCTGTTCTGGCTCGGTATCCCACCAGGTACAGCACCAACAACGA 1098
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1019 AATGGATCGAATCGGTTCTGTTCTGGCTCGGTATCCCACCCGGTACAGCACCAACAACGA 1078
Query 1099 GTATGCTAAACCGGATCCCGCAAAAGCAAATCTACCTCAAGAGAAAATCCGATTACGTCC 1158
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTATGCTAAACCGGATCCCACAAAAGCAAATCTACCTCAAGAGAAAATCCGATTACGTCC 1138
Query 1159 AAAAACCGATTTCAAGAACCGGTTTAGAGTCGATATTCAAGGTCCTGACAGAGAACGAGA 1218
|||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||
Sbjct 1139 AAAAACCGATTTCACGAACCGGTTTAGAGTCAATATTCAAGATCATGACAGAGAACGAGA 1198
Query 1219 ACGTGACAATGGCTTTTAACCCTTACGGAGGGAGGATGAGCGAGATTCCATCGACCGAGA 1278
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 ACGTCACAATGGCTTTTAACCCTTACGGAGGGAGGATGAGTGAGATTCCATCGACCGAGA 1258
Query 1279 CCGCTTTCCCGCACCGAGCAGGAAACATGTTCAAGATTCAGTACGCAGCAAACTGGTTCG 1338
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCGCTTTCCCTCACAGAGCAGGAAACATGTTCAAGATTCAGTACGCAGCAAACTGGTTCG 1318
Query 1339 TGCCAGGGGAAGCAGTGGCTAAAGATTGCTTGAGCCAGACGGAAAGAGTGTTCGAGGCAA 1398
||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1319 TGCCAGGTGAAGCAGTGGCTAAAGATTGCTTGAGCCAGACAGAAAGATTGTTCGAGGCAA 1378
Query 1399 TGAGCCCTTACGTGTCAAAGAATCCAAGAGAAGCGTTTTTGAACTATAGAGACGTCGACA 1458
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1379 TGAGCCCTTACGTGTCAAAGAATCCAAGAGAGGCGTTTTTGAACTATAGAGACGTTGACA 1438
Query 1459 TTGGCAAGAGCTTGAATTCGACGTACGAGGAAGGTAAAGTGTACGGAGTTAAATATTTTA 1518
|||| |||||||| || || ||||||||||||||||||||||||||| |||| |||||||
Sbjct 1439 TTGGAAAGAGCTTAAACTCAACGTACGAGGAAGGTAAAGTGTACGGATTTAAGTATTTTA 1498
Query 1519 AGGATAACTTCGAGAAATTGGTTAATATCAAGAGCAGAGTTGATCCCGACAACTTTTTCC 1578
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1499 AGGATAACTTCGAGAAATTGGTTAAGATCAAGAGCAGAGTTGATCCCGACAACTTTTTCC 1558
Query 1579 GGTACGAGCAGAGCATTCCAGTGCTCTCCAGCCACTAGAGA--CTAGAGACACACTTCTA 1636
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1559 GGTACGAGCAGAGCATTCCAGTGCTCTCCAGCCACTAGAGAGACTAGAGACACACTTCTA 1618
Query 1637 TT 1638
||
Sbjct 1619 TT 1620
> AT1G34575.1 | Symbols: | FAD-binding Berberine family protein
| chr1:12657149-12658732 REVERSE LENGTH=1584
Length=1584
Score = 1583 bits (857), Expect = 0.0
Identities = 1355/1591 (85%), Gaps = 52/1591 (3%)
Strand=Plus/Plus
Query 32 AACAACTCAAACCCTAATCATCACCA-TTTTTCTTC-TCGCAATCCCAAGATCATTCGCA 89
||||||||||||||||||| ||| || ||||||| | || ||| |||| ||||||||||
Sbjct 12 AACAACTCAAACCCTAATCTTCA-CAGTTTTTCTCCTTC-TAATTCCAACATCATTCGCA 69
Query 90 TCACCACCATCACTCGAAGAC-GTTTTCGCACAATGCT-TAGCTGATTTT-AAACCTTCA 146
|||||||| |||| ||||| | |||| ||||||| | || | | |||| ||||| |
Sbjct 70 GCACCACCAAAACTCAAAGACAG-TTTCACACAATG-TGTAACCG-TTTTCAAACC-T-- 123
Query 147 AATCCAAAATCCCCAATCCAAAACTTCATC-TACACTCAACAAAGCCCTAATTTCCTCAC 205
||| | ||||||||||||||||| | ||||| ||||||| |||||| ||||||||
Sbjct 124 --TCC---GT-CCCAATCCAAAACTTCA-CATACACGCAACAAAACCCTAACTTCCTCAC 176
Query 206 AATCCTTAACAATTACGTCCGTAATCTTCGTTACTTCAACAACACGACACGTAAACCCGT 265
|| || ||||| |||||||| ||||| |||||||||||| || ||||||||||| ||
Sbjct 177 CATTCTCAACAACTACGTCCGCAATCTCCGTTACTTCAACGGTACTACACGTAAACCGGT 236
Query 266 CGCGATTGTAGCTGCGGCGGA-TGTCACTCACATCCAGGCTACAATC-ACTTGCGCCAAG 323
||||| ||||| ||||| | | ||||||| ||||| ||||||||| || ||||||||
Sbjct 237 AGCGATCGTAGCCGCGGCTCACT-TCACTCATATCCAAGCTACAATCAAC-TGCGCCAAA 294
Query 324 AATCTCGGCCTCCAGCTCCGGATACGCAGCGGAGGCCATGACTACGACGGTATGTCGTAT 383
|| || |||||||||||||| || || || ||||| ||||||||||| || ||||| |||
Sbjct 295 AAACTTGGCCTCCAGCTCCGTATCCGTAGTGGAGGACATGACTACGATGGAATGTCTTAT 354
Query 384 TTATCAACCATTGATTTCGTTGTCCTAGACATGTTCAATCTCCGGT-CTATCAATATAGA 442
||||||||| |||||||||| ||||| |||||||| ||||| | || | || | || ||
Sbjct 355 TTATCAACCGTTGATTTCGTCGTCCTCGACATGTTTAATCTAC-GTGCAATTGAGATCGA 413
Query 443 TCCTAAACTCGACACCGCGTGGGTCCAATCCGGTGCTACGCTTGGAGAGATCTACTACGG 502
||| ||||| || ||||||||||| ||||||||||| || || |||||||||||||||
Sbjct 414 TCCAAAACTAGATACCGCGTGGGTACAATCCGGTGCAACCCTAGGAGAGATCTACTAC-A 472
Query 503 A-GTCGCCAACAAAAGCAATGATCTTCGTGGATTT-CCTGCCGGAATCTG-CCCTGGTTT 559
| || ||||| |||||||| | || ||||| ||| || || |||||||| ||| ||| |
Sbjct 473 ACGTTGCCAATAAAAGCAACAACCTCCGTGG-TTTCCCCGCTGGAATCTGTCCC-GGTCT 530
Query 560 AGGCGCTGGTGGACATTTTAGCGGTGGCGGTTATGGAAACATGATGAGGAAATACGGTTT 619
|| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 531 CGGTGCTGGTGGGCATTTTAGCGGTGGAGGTTACGGAAACATGATGAGGAAATACGGTTT 590
Query 620 ATCGATCGATAACATTATAGACGCTAAGATCGTTGACGCTAAAGGAAGAGTCTTGGACCG 679
|||||| ||||||||||||||||||||||| ||||| ||||| | |||||||||||||||
Sbjct 591 ATCGATTGATAACATTATAGACGCTAAGATTGTTGATGCTAACGCAAGAGTCTTGGACCG 650
Query 680 GAGCTCAATGGGAGAAGATCTTTTCTGGGCCTTACGTGGTGGTGGAGCCGCTAGTTTCTG 739
||| || ||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 651 GAGTTCCATGGGAGAAGATCTTTTCTGGGCCTTACGAGGCGGTGGAGCCGCTAGCTTCTG 710
Query 740 TGTTGTCTTAGCTTGGAAGATTAAGCTTGTTCCGGTGCC-GACTAAAGTCACAGTCTTCA 798
||||||||||||||||||||| ||||| ||||| || || || ||||| |||||||| |
Sbjct 711 TGTTGTCTTAGCTTGGAAGATCAAGCTAGTTCCTGTCCCGGA-GAAAGTTACAGTCTTTA 769
Query 799 ACGTTGAAACGGTTGGAAACAGAGGAAGTGTGAA--CATCACGGAACTTGTAACCAAATG 856
|||||||||| | ||||||||||| | || || | | || || |||| | | |||||
Sbjct 770 ACGTTGAAACAATCGGAAACAGAGG-A--GT-AATCCCT-ACCGATCTTGCAGCGAAATG 824
Query 857 GCAAGAGATCGCAGACAAGATCGACAACGATCTGTTCATAAGATTAAC-TTTAGGCTCAA 915
|||||||||||| ||||||||||| |||||| |||||||||||||||| || | ||||||
Sbjct 825 GCAAGAGATCGCCGACAAGATCGATAACGATTTGTTCATAAGATTAACGTTGA-GCTCAA 883
Query 916 GCAACAAAACCGTGAAGGCTTCTTTCATGGGAATGTACCTCGGAAACTCATCGAAGCTTC 975
| ||||| || || |||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 884 GTAACAAGACGGTCAAGGCTTCTTTCATGGGAATGTACTTAGGAAACTCCGAGAAGCTTC 943
Query 976 TAGAAATCATGAACGCGAAATTCCCTGAGCTTGGTCTGAACAAAACAGAGTGTATAGAAA 1035
|||| || |||||||| |||||||| || || |||||||||||||||||||| |||||||
Sbjct 944 TAGAGATTATGAACGCCAAATTCCCGGAACTCGGTCTGAACAAAACAGAGTGCATAGAAA 1003
Query 1036 TGAAATGGATCGAATCGGTTCTGTTCTGGCTCGGTATCCCACCAGGTACAGCACCAACAA 1095
|||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 1004 TGAAATGGATCGAATCAGTTCTGTTCTGGCTTAGTATCCCACCGGGTACAGCACCAACAT 1063
Query 1096 CGAGT-ATGCTAAACCGGATCCCGCAAAAGCAAATCTACCTCAAGAGAAAATCCGATTAC 1154
|| || ||||||||||| ||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1064 CG-GTCATGCTAAACCGAATCCCACAAAAGCAAATCTACCTTAAAAGAAAATCCGATTAC 1122
Query 1155 GTCCAAAAACCGATTTCAAGAA-CCGGTTTAGAGTCGATATTCAAGGTCCTGACAGAGAA 1213
|| || |||||||| |||| || ||||| |||| |||||||||||| | || |||||||
Sbjct 1123 GTGCAGAAACCGATCTCAA-AACCCGGTCTAGAATCGATATTCAAGATTCTTTCAGAGAA 1181
Query 1214 CGAGAACGTGACAATGGCTTTTAACCCTTACGGAGGGAGGATGAGCGAGATTCCATCGAC 1273
|||||||||| | ||||||| ||||| ||||| ||||| |||||||||||||| ||||
Sbjct 1182 CGAGAACGTGTCGATGGCTTGGAACCCATACGGCGGGAGAATGAGCGAGATTCCGGCGAC 1241
Query 1274 CGAGACCGC-TTTCCCGCACCGAGCAGGAAACATGTTCAAGATTCAGTACGCAGCAAACT 1332
||||| || ||| || ||||||||||| |||||||| |||||||||||| || | ||||
Sbjct 1242 AGAGACGGCGTTT-CCTCACCGAGCAGGGAACATGTTTAAGATTCAGTACTCATCTAACT 1300
Query 1333 GGTTCGTGCCAGGGGAAGCAGTGGCTAAAGATTGCTTGAGCCAGACGGAAAGAGTGTTCG 1392
||||||||||||| |||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 1301 GGTTCGTGCCAGGTGAAGAAGCGGCTAGCGATTGCTTGAGCCAAACGGAAAGAGTGTTCG 1360
Query 1393 AGGCAATGAGCCCTTACGTGTCAAAGAATCCAAGAGAAGCGTTTTTGAACTATAGAGACG 1452
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1361 AGGCAATGAGCCCTTACGTGTCTAAGAATCCAAGAGAAGCGTTTTTGAACTACAGAGATA 1420
Query 1453 TCGACATTGGCAAGAGCTTGAATTCGACGTACGAGGAAGGTAAAGTGTACGGAGTTAAAT 1512
| |||||||| |||| |||||| || ||||||||||||||||||||||| |||||||| |
Sbjct 1421 TTGACATTGGGAAGAACTTGAACTCAACGTACGAGGAAGGTAAAGTGTATGGAGTTAAGT 1480
Query 1513 ATTTTAAGGATAACTTCGAGAAATTGGTTAATATCAAGAGC-AGAGTTGATCCCGACAAC 1571
|||||||| |||||||||||| |||||| | | |||| | ||||||||||| ||||||
Sbjct 1481 ATTTTAAGAATAACTTCGAGAGGTTGGTTCAGGTTAAGA-CTAGAGTTGATCCGGACAAC 1539
Query 1572 TTTTTCCGGTACGAGCAGAGCATTCCAGTGC 1602
||||||||||||||||||||||||||||||
Sbjct 1540 ATTTTCCGGTACGAGCAGAGCATTCCAGTGC 1570
> AT1G30700.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10892570-10894572 FORWARD LENGTH=1772
Length=1772
Score = 78.7 bits (42), Expect = 2e-13
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1130 CTACCTCAAGAGAAAATCCGATTACGTCCAAAAACCGATTTCAAGAACCGGTTTAGAGTC 1189
|||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 1151 CTACCTCAAGAGGAAATCAGATTACGTACGTGAACCGATTTCAAGAACCGGTTTAGAGTC 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80923278540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5