BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922140
Length=1622
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30720.1 | Symbols: | FAD-binding Berberine family protein ... 2392 0.0
AT1G30730.1 | Symbols: | FAD-binding Berberine family protein ... 1546 0.0
AT4G20820.1 | Symbols: | FAD-binding Berberine family protein ... 65.8 1e-09
> AT1G30720.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10898172-10899912 FORWARD LENGTH=1741
Length=1741
Score = 2392 bits (1295), Expect = 0.0
Identities = 1510/1615 (93%), Gaps = 10/1615 (1%)
Strand=Plus/Plus
Query 15 aaa-aaaaTGGAGAAATGGCTCGTGATCTCTCTT-CTACTACTGATCTCAACATCAATCA 72
||| ||||||||||||| ||||||||||||| || ||||||||||||||||||||| | |
Sbjct 19 AAACAAAATGGAGAAATTGCTCGTGATCTCT-TTGCTACTACTGATCTCAACATCAGTTA 77
Query 73 CAACTTCACAATCCGTGACCGATCCAATAGCTTTCCTTCGATGTCTCGATAGACAACCAA 132
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 78 CAACTTCACAATCCGTGACCGATCCAATAGCTTTCCTCCGATGTCTCGATAGACAACCAA 137
Query 133 CGGACCCAACAAGTCCTAACTCCGCCGTCGCTTATATCCCAACAAACTCTTCCTTCACCG 192
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 138 CGGACCCAACAAGTCCTAACTCCGCCGTTGCTTACATCCCAACAAACTCTTCTTTCACCA 197
Query 193 CCGTCCTCCGCCGCCGTATACCTAACCTCCGTTTCGACAAACCCACTACTCGTAAACCCA 252
| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 198 CTGTCCTCCGCAGCCGTATACCTAACCTCCGTTTCGACAAACCCACTACTCCAAAACCCA 257
Query 253 TCTCCGTCGTTGCAGCTACCACGTGGACACATATACAAGCTGCTATAGGATGCGCACGCG 312
||||||| || || || ||||||||||||| |||||||||||| ||||||||||||| |
Sbjct 258 TCTCCGTGGTGGCTGCCGCCACGTGGACACACATACAAGCTGCTGTAGGATGCGCACGTG 317
Query 313 AGCTCTCTCTCCAAGTCAGGATCAGAAGTGGTGGCCACGACTTCGAAGGACTCTCTTACA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AGCTCTCTCTCCAAGTCAGGATCAGAAGTGGTGGCCACGACTTCGAAGGACTCTCTTACA 377
Query 373 CTTCCACCGTCCCTTTCTTTGTTCTCGACATGTTCGGTTTTAAATCCGTGGACGTGAATC 432
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 378 CTTCCACCGTCCCTTTCTTTGTTCTCGACATGTTCGGTTTTAAAACCGTGGACGTAAATC 437
Query 433 TAACCGAGAGAACGGCTTGGGTTGATTCTGGTGCTACCGTCGGAGAGCTTTATTACCGGA 492
| |||||||||||||||||||||||||||||||||||| ||||||||||||| || | |
Sbjct 438 TCACCGAGAGAACGGCTTGGGTTGATTCTGGTGCTACCCTCGGAGAGCTTTACTATAGAA 497
Query 493 TAGCTGAGAAGAGCAATGTTTTTGGATTTCCGGCGGGTTTGTCTACGACATTGGGCGTCG 552
| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
Sbjct 498 TCTCTGAGAAGAGCAATGTTCTTGGATTTCCGGCGGGTTTGTCTACCACATTGGGCGTTG 557
Query 553 GTGGACATTTTAGCGGCGGAGGATACGGTAATCTGATGAGAAAGTATGGATTGTCGGTGG 612
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 558 GTGGACACTTTAGCGGCGGAGGATACGGTAATCTGATGAGAAAGTATGGTTTGTCGGTGG 617
Query 613 ATAATGTTGTCGGCTCCGGGATCGTTGATTCGAATGGGAACATCTTCACCGATCGAGTTT 672
|||| ||| ||||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 618 ATAACGTTTTCGGCTCCGGGATCGTTGATTCGAACGGAAATATCTTCACCGATCGGGTTT 677
Query 673 CGATGGGGGAAGACCGTTTCTGGGCGATTCGAGGTGGTGGTGCAGCGAGCTACGGTGTTG 732
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 678 CGATGGGGGAAGACCGTTTTTGGGCGATTCGTGGAGGTGGTGCAGCGAGCTACGGTGTTG 737
Query 733 TACTCGGCTACAAGATCCAGCTAGTACCGGTGCCAGAGAAAGTTACTGTTTTTAAAATCG 792
| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 738 TCCTCGGCTACAAGATCCAGCTAGTACCGGTGCCTGAGAAAGTTACGGTTTTTAAAGTCG 797
Query 793 GAAAACCCGTCGGAGAAGGAGCGGGTGATCTTATAATGAAGTGGCAGAGTTTTGCTCATA 852
||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 798 GAAAAACTGTCGGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAGAGTTTTGCTCATA 857
Query 853 GTACGGATCGGAATTTGTTCGTGAGGTTGACGTTGACTTTGGTCAACGGTACGAAGCCTG 912
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 858 GTACGGATCGGAATTTGTTCGTGAGGTTAACTTTGACTTTAGTCAACGGTACGAAGCCTG 917
Query 913 GTGAAAAGATGGTTTTGGCTTCTTTTATTGGGATGTATTTAGGCCGGTCGGATAAGCTGT 972
|||| || | |||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 918 GTGAGAATACGGTTTTAGCGACTTTCATTGGGATGTATTTAGGCCGGTCGGATAAGCTGT 977
Query 973 TGACCGTGATGAACCGGGATTTCCCGGAGTTGAAGTTGAAGAAAACCGATTGTACCGAGA 1032
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 978 TGACCGTGATGAACCGGGATTTCCCGGAGTTGAAGCTGAAGAAAACCGATTGTACCGAGA 1037
Query 1033 TGAGATGGATCGATTCGGTTCTGTTTTGGGACGATTATCCGGTTGGTACACCGACTTCTG 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 TGAGATGGATCGATTCGGTTCTGTTTTGGGACGATTATCCGGTTGGTACACCGACTTCTG 1097
Query 1093 TGCTGCTAAACCCG---GTCGCAAAAAAGTTGTTCATGAAACGAAAATCTGACTACGTGA 1149
|||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1098 TGCTACTAAATCCGCTAGTCGCAAAAAAGTTGTTCATGAAACGAAAATCGGACTACGTGA 1157
Query 1150 AGCGTCCGATTTCGAGAGCCGG-CATCGATTTGATACTCAAGAAATTGGTAGAGGTTGAG 1208
|||||| |||||||||| ||| | ||| |||||||||||||||||||||||||||||||
Sbjct 1158 AGCGTCTGATTTCGAGAACCGATC-TCGGTTTGATACTCAAGAAATTGGTAGAGGTTGAG 1216
Query 1209 AAAGTTAAAATGAATTGGAATCCGTACGGAGGAAGAATGGGTGAGATCCCGAGTTCGAGG 1268
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1217 AAAGTTAAAATGAATTGGAATCCGTATGGAGGAAGGATGGGTGAGATCCCGAGTTCGAGG 1276
Query 1269 ACACCTTTCCCACATAGAGCAGGCAATTTGTTCAACATTGAGTATATCATAGACTGGTCC 1328
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 ACACCATTCCCACATAGAGCAGGCAATTTGTTCAACATTGAGTATATCATAGACTGGTCA 1336
Query 1329 GAAGCTGGAGATAACGTCGAGA-GAAAATATTTGGCACTCGCGAATGAGTTATACGGATT 1387
|||||||||||||| || |||| |||| |||||||||||||||||||| || || ||||
Sbjct 1337 GAAGCTGGAGATAATGTGGAGAAGAAA-TATTTGGCACTCGCGAATGAATTTTATAGATT 1395
Query 1388 CATGACCCCGTACGTGTCTAGTAGTCCGAGGGAGGCGTTTTTGAATTACCGTGACCTTGA 1447
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1396 CATGACCCCGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGAATTACCGTGATCTTGA 1455
Query 1448 CATAGGGTCAAGTGTTAAGTCCACGTACCAGGAAGGTAAAATCTATGGGGATAAATATTT 1507
||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 1456 CATAGGGTCAAGTGTTAAGTCTACGTACCAGGAAGGTAAAATCTACGGGGCTAAATATTT 1515
Query 1508 CAAAGACAATTTCGAGAGACTAGTGGATATTAAAACCACGATCGATGCGGAAAACTTTTG 1567
||| || |||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 1516 CAAGGAGAATTTCGAGAGATTAGTGGATATTAAAACCACGATTGATGCGGAAAACTTTTG 1575
Query 1568 GAAAAACGAACAAAGCATTCCGGTTCGAAGTTAATAAGTTCAAGACGAATGTTGT 1622
||||||||||||||||||||||||| |||| ||||| || | ||| |||||||||
Sbjct 1576 GAAAAACGAACAAAGCATTCCGGTTAGAAGATAATACGTACGAGATGAATGTTGT 1630
> AT1G30730.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10900854-10902534 FORWARD LENGTH=1681
Length=1681
Score = 1546 bits (837), Expect = 0.0
Identities = 1327/1561 (85%), Gaps = 43/1561 (3%)
Strand=Plus/Plus
Query 73 CAACTTCACAATCCG-TGACCGATCCAATAG-CTTTCCTTCGATGTCTCGAT-AGACAAC 129
|||||||||| | || |||||||| | || | ||||| |||||||||| | ||| ||
Sbjct 50 CAACTTCACAGT-CGCAAACCGATCC-AGAGACATTCCTCCGATGTCTCG-TAAGAGAAG 106
Query 130 CAACGGACCCAACAAGTCCT-AACTCCGCCGTCGCTTATATCCCAACAAACTCTTCCTTC 188
| | |||| ||| || | | ||||| |||| | || |||||| ||||||| || |||
Sbjct 107 GATCAAACCC-ACAGGTTTTCATCTCCGACGTCACCTACATCCCATCAAACTCCTCTTTC 165
Query 189 ACCGCCGTCCTCCGCCGCCGTATACCTAACCTCCGTTTCGACAAACCCACTACTCGTAAA 248
||| |||||||||||||||| ||||||||||||||||||||||||||||| || | |||
Sbjct 166 ACCACCGTCCTCCGCCGCCGCATACCTAACCTCCGTTTCGACAAACCCACCACCCCAAAA 225
Query 249 CCCATCTCCGTCGTTGCAGCTACCACGTGG--ACACATATAC-AAGCTGCTATAGGATGC 305
|||||| || || | | | ||||||||| |||||| | | | ||| ||| |||
Sbjct 226 CCCATCGCCATCATCACCCCCACCACGTGGTCACACAT-TTCTCCGGTGC--TAGCTTGC 282
Query 306 GCACGCGAGCTCTCTCTCCAAGTCAGGATCAGAAGTGGTGGCCACGACTTCGAAGGACTC 365
|||||| | || || |||| ||||||||| |||| || |||||||||||||||||||||
Sbjct 283 GCACGCTTGTTCCCTGTCCAGGTCAGGATCCGAAGCGGCGGCCACGACTTCGAAGGACTC 342
Query 366 TCTTACACTTCCACCGTC-CCTTTCTTTGTTC-TCGACATGTTCGGTTTTAAATCCGTGG 423
|||||||| ||||| | | || ||| || || ||||| || || || |||||||| |
Sbjct 343 TCTTACACCTCCACAG-CTCCGTTC-TTCCTCATCGACTTGCTCAACTTCAAATCCGTTG 400
Query 424 ACGTGAATCTAACCG-AGAGAACGGCTTGGGTTGATTCTGGTGCTAC-CGTCGGAGAGCT 481
| |||||||| || | || ||||||||||||||||| | || ||||| | | ||||||||
Sbjct 401 ATGTGAATCTCACGGAAG-GAACGGCTTGGGTTGATACCGGCGCTACAC-TGGGAGAGCT 458
Query 482 TTATTACCGGATAGCTGAGAAGAGCAATGTTTTTGGATTTCCGGCGGGTTTGTCTACGAC 541
|||||| || |||||||| ||||||||| |||| |||||||||||||||| ||| ||
Sbjct 459 TTATTATAAAATCGCTGAGAAAAGCAATGTTCTTGGGTTTCCGGCGGGTTTGTGTACTAC 518
Query 542 ATTGGGCGTCGGTGGACATTTTAGCGGCGGAGGATACGGTA-ATCTGATGAGAAAGTATG 600
||||||||| ||||||||| ||||||||||||| ||||| | | |||||||||||||||
Sbjct 519 ATTGGGCGTTGGTGGACATATTAGCGGCGGAGGGTACGGGACA-ATGATGAGAAAGTATG 577
Query 601 GATTGTCGGTGGATAATGTTGTCGGCTCCGGGATCGTTGATTCGAATGGGAACATCTTCA 660
| ||||||||||| || |||||||||||| ||||| | || || |||||||||| || |
Sbjct 578 GTTTGTCGGTGGACAACGTTGTCGGCTCCAGGATCATCGACTCTAATGGGAACACCTACT 637
Query 661 CCGATCGAGTTTCGATGGGGGAAGACCGTTTCTGGGCGATTCGAGGTGGTGGTGCAGCGA 720
||||||| | |||||||||||||| | |||||||||| ||||||| ||||| || ||||
Sbjct 638 TCGATCGAATGTCGATGGGGGAAGAGCTTTTCTGGGCGGTTCGAGGAGGTGGAGCCGCGA 697
Query 721 GCTACGGTGTTGT-ACTCGGCTACAAGATCCAGCTAGTACCGGTGCCAGAGAAAGTTACT 779
| | ||| | || | | || ||||| |||| | | || ||||| || |||||||||||
Sbjct 698 GTTTCGGCATCGTGA-TGGGATACAAAATCCGGTTGGTTCCGGTTCCGGAGAAAGTTACG 756
Query 780 GTTTTTAAAATCGGAAAACCCGTCGGAGAAGGAGCGGGTGATCTTATAATGAAGTGGCAG 839
||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct 757 GTTTTTAGCGTCGGAAAAACCGTCGGAGAAGGAGCCGTTGATCTTATAATGAAGTGGCAG 816
Query 840 -AGTTTTGCTCATAGTACGGATCGGAATTTGTTCGTGAGGTTGACGTTGACTTTGGTCAA 898
| || | ||||||||||||||||||||||||| |||| | |||| |||||||| |||||
Sbjct 817 AACTTCT-CTCATAGTACGGATCGGAATTTGTTTGTGAAGCTGACTTTGACTTTAGTCAA 875
Query 899 CGGTACGAAGCCTGGTGAAAAGATGGTTTTGGCTTCTTTTATTGGGATGTAT-TTAGGCC 957
|||| | ||||| |||||||| | |||||| || |||| ||||||||| || || |||
Sbjct 876 CGGTGCAAAGCCGGGTGAAAAAAAGGTTTTAGCGACTTTCATTGGGATGAATCTT-GGCG 934
Query 958 GGTCGGATAAG-CTGTTGACCGTGATGAACCGGGATTTCCCGGAGTTGAAGTTGAAGAAA 1016
||| |||||| | ||||| ||||||||||||||||||||||||||| ||| ||||||||
Sbjct 935 GGTTTGATAAGAC-GTTGAACGTGATGAACCGGGATTTCCCGGAGTTAAAGCTGAAGAAA 993
Query 1017 ACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTTTTGGGACGATTATCCGGTT 1076
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 994 ACCGATTGTACCGAGATGAGATGGATCGATTCGGTTCTGTTTTGGGCCGGTTATCCGGTT 1053
Query 1077 GGTACACCGACTTCTGTGCTGCTAAACCC---GGTCGCAAAAAAGTTGTTCATGAAACGA 1133
|||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 1054 GGTACACCGACTTCTGTGCTACTAAACCCTACGGTCACAAAAAAGTTGTTCATGAAACGG 1113
Query 1134 AAATCTGACTACGTGAAGCGTCCGATTTCGAGAGCCGGCATCGATTTGATACTCAAGAAA 1193
||||| |||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||
Sbjct 1114 AAATCGGACTACGTGAAGCGTCCGGTTTCGAGAACCGGCCTCGGTTTGATACTCAAGAAA 1173
Query 1194 TTGGTAGAGGTTG-AGAAAGTTAAAATGAATTGGAATCCGTACGGAGGAAGAATGGGTGA 1252
||||| ||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1174 TTGGTTGAG-TTGGAGAAAGTTGAAATGAATTGGAATCCGTATGGAGGAAGAATGGGTGA 1232
Query 1253 GATCCCGAGTTCGAGGACACCTTTCCCACATAGAGCAGGCAATTTGTTCAACATTGAGTA 1312
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1233 GATCCCGAGTTCGAGGACACCTTTCCCACATAGAGGAGGCAATTTGTTCAACATTGAATA 1292
Query 1313 TATCATAGACTGGTCCGAAGCTGGAGATAACGTCGAGA-GAAAATATTTGGCACTCGCGA 1371
||||||||||||||| |||||||||||||| || |||| |||| |||||||| ||||| |
Sbjct 1293 TATCATAGACTGGTCAGAAGCTGGAGATAATGTGGAGAAGAAA-TATTTGGCGCTCGCAA 1351
Query 1372 ATGAGTTATACGGATTCATGACCCCGTACGTGTCTAGTAGTCCGAGGGAGGCGTTTTTGA 1431
||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1352 ATGAGTTTTATAGATTCATGACCCCGTACGTGTCTAGTAATCCGAGGGAGGCGTTTTTGA 1411
Query 1432 ATTACCGTGACCTTGACATAGGGTCAAGTGTTAAGTCCACGTACCAGGAAGGTAAAATCT 1491
|||||||||| ||||||| |||||||||| ||| ||||||||| |||||||||||||||
Sbjct 1412 ATTACCGTGATATTGACATTGGGTCAAGTGGTAATTCCACGTACGAGGAAGGTAAAATCT 1471
Query 1492 ATGGGGATAAATATTTCAAAGACAATTTCGAGAGACTAGTGGATATTAAAACCACGATCG 1551
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||| | |||
Sbjct 1472 ATGGGGCTAAATATTTCAAAGACAATTTCGAGAGGTTAGTGGATATCAAAACCAAGTTCG 1531
Query 1552 ATGCGGA-AAACTTTTGGAAAAACGAACAAAGCATTCCGGTTCG-AAGTTAATAAGTTCA 1609
||| | | ||||||||||| ||||||||||| |||||||| || |||| ||||||||||
Sbjct 1532 ATGAG-ATAAACTTTTGGAGGAACGAACAAAGTATTCCGGTCCGGAAGT-AATAAGTTCA 1589
Query 1610 A 1610
|
Sbjct 1590 A 1590
> AT4G20820.1 | Symbols: | FAD-binding Berberine family protein
| chr4:11150160-11151758 FORWARD LENGTH=1599
Length=1599
Score = 65.8 bits (35), Expect = 1e-09
Identities = 46/51 (90%), Gaps = 2/51 (4%)
Strand=Plus/Plus
Query 546 GGCGTCGGTGGACATTTTAGCGGCGGAGGATACGGTAATCTGA-TGAGAAA 595
|||||||| |||||||||||||||||||||||||||| | | | |||||||
Sbjct 547 GGCGTCGGAGGACATTTTAGCGGCGGAGGATACGGTACTTT-ACTGAGAAA 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80120069820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5