BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922142
Length=1654
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30740.1 | Symbols: | FAD-binding Berberine family protein ... 2340 0.0
> AT1G30740.1 | Symbols: | FAD-binding Berberine family protein
| chr1:10903029-10904630 FORWARD LENGTH=1602
Length=1602
Score = 2340 bits (1267), Expect = 0.0
Identities = 1494/1605 (93%), Gaps = 9/1605 (1%)
Strand=Plus/Plus
Query 33 TATCTTTTCTTTCTTCTCTTTTTCGCTGCATCGTCCTCTATATCATTGAGTTCTGCAGAT 92
|||||| |||||||||| || ||||||||||||| ||| || ||||||||||||||||||
Sbjct 4 TATCTTATCTTTCTTCTATTCTTCGCTGCATCGTACTCAATGTCATTGAGTTCTGCAGAT 63
Query 93 TCCGTAACTATCTACGAAGATTTTGTCCGATGTTTCAAAAACGTAACAAGTATCACCGAC 152
|||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||||
Sbjct 64 TCCGTAACTATCTACGAAGATTTTGTCCAATGTTTCAAAAACGTGACAACTATCTCCGAC 123
Query 153 GA-TGATCTCTCCGCCGTCGTTTTGCCACGTACCAGCGTTTCCTTCACTCCTACCTTACG 211
| ||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 124 -ATTGATCTCTCCGACGTCGTTTTACCACGTACTAGCATTTCCTTCACTCCTACCTTACG 182
Query 212 CGCTTACATCAGAAACGCGCGTTTCAACACCTCCTCAACGCCAAAACCGTCGATCATCAT 271
||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 183 CGCCTACATCAGAAACGCCCGTTTCAACACCTCCTCAATGCCAAAACCGTCGATCATCAT 242
Query 272 CCTGCCACGTGTCGATTCCCACGTTCAAGCCGCCGTGATCTGCGCCAAAACGCTGAATCT 331
| |||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 243 CGTGCCCCGTGTCGATTCACACGTTCAAGCCGCCGTGATTTGCGCCAAAACGCTTAATCT 302
Query 332 CCAGCTTAAGATCCGTAGCGGTGGTCATGACTACGACGGTCTCTCTTACGTCTCCGCTGT 391
|||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 303 CCAGCTGAAGATTCGTAGCGGCGGTCATGACTACGACGGTCTTTCTTACGTCTCCGCCGT 362
Query 392 GACGTTCCTCGTCCTTGATCTCTCTAATTTCCGAAACGTCACCGTTGATATAACCGATGA 451
||||||||||| |||||||| || |||||||||||| ||||||| ||| ||| | ||
Sbjct 363 AACGTTCCTCGTACTTGATCTATCCAATTTCCGAAACATCACCGTCGATTTAA---ACGA 419
Query 452 CGGAGCAGGATCCGCTTGGGTACAATCCGGCGCGACGCTCGGCGAGCTTTATTATCGGAT 511
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 420 CGGAGGAGGATCCGCTTGGGTACAAACCGGCGCGACGCTCGGCGAGCTTTATTATAGGAT 479
Query 512 CTGGGAGAAGAGCGAGGTCCATGCTTTCCCCGCCGGCGTATGTCCTACCGTCGGCGTCGG 571
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct 480 CTGGGAGAAGAGCGAGGTCCATGCTTTCCCTGCCGGAGTTTGTCCTACCGTCGGCGTTGG 539
Query 572 AGGACACGTAAGCAGCGGTGGATACGGACACCTGATTCGAAAATTTGGTCTCACTATAGA 631
||||||||| ||| | ||||||||||||||| ||||||||||||| || |||||||||||
Sbjct 540 AGGACACGTTAGCGGTGGTGGATACGGACACATGATTCGAAAATTCGGACTCACTATAGA 599
Query 632 TCACGTCGTTGACGCCACAATCGTCGACGCTAACGGTCAAATTCACGATCGGAAATCTAT 691
||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 600 TCACGTCGTCGACGCTACAATCGTTGACGCTAACGGTCAGATTCACGATCGGAAATCGAT 659
Query 692 GGGAGAGGATCTTTTCTGGGCGATTCGCGGCGGAGGCGGCGGAAGCTTCGGCGTTATTCT 751
|| ||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 660 GGAAGAAGATCTCTTCTGGGCGATTCGCGGCGGAGGCGGCGGAAGCTTCGGCGTCGTTTT 719
Query 752 AGCTTTCAAAGTGAAACTCGTGGA-GGTTCCAAAAACCGTAACCGTTTTCAGGGTTGATA 810
||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 720 AGCTTTCAAAGTGAAACTCGT-GACCGTTCCAAAAACCGTAACCGTTTTCAGAGTTGATA 778
Query 811 AATCGGTTGACGAAAATGCCCTTGACATGGTTCATAAATGGCAATTCGTAGCTCCAAGAA 870
| || || |||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 779 AGTCTGTAGACGAAAATGCCCTTGACATGGTTTACAAATGGCAATTCGTAGCTCCTAGAA 838
Query 871 CCGACCCGGGTCTATTCATGAGAGTGTTGTTATCCTCTCCGACGCAGAACAAAACACGTA 930
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 839 CCGACCCGGGTTTATTCATGAGAGTGTTGTTATCATCTCCGACGCAGAACAAAACAAGTA 898
Query 931 CGGTGAACGCTAAACTCAGGGCGTTGTATCTTGGAAGAGCTGACGACGTCGTTTTAAGGA 990
|||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 899 CGGTGAACACTAAACTCAGGGCGTTGTATCTTGGAAAAGCAGACGACGTCGTTTTAAAGA 958
Query 991 TGACGGAGGAGTTTCCGGAGTTGGGTTTGAAGAAAGAAGATTGTAAGGAGATGACGTGGA 1050
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGCGGAGGAGTTTCCGGAGTTGGGTTTGAAGAAAGAAGATTGTAAGGAGATGACGTGGA 1018
Query 1051 TCCAATCGCTATTATGGTGGATGAATCATGTAGACGTGGATAAAGTTAAACCGGAGATTT 1110
||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1019 TCCAATCACTCTTATGGTGGATGAATCATGTAGACGTGGACAAAGTCAAACCGGAGATAT 1078
Query 1111 TGCTCGAGAGAGAACCGGATTCGGCTAAATTTCTCAAGAGGAAATCGGATTACGTTGAGA 1170
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1079 TACTCGAGAGAGAACCGGATTCGGCTAAATTTCTCAAGAGAAAATCAGATTACGTAGAGA 1138
Query 1171 AGGAGATGACCAAACCAGAATTAAACCGATTGTTTCAGAAATTGGCGACGTTAGATAGAA 1230
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1139 AAGAGATGACCAAACCAGAATTAAACCGGTTGTTTCAGAAATTGGCGACGTTAGATAGAA 1198
Query 1231 CCGGTTTGGTTTTGAATCCGTATGGAGGGAATTTAAACGTGACCGCAGTGAATGAAACAG 1290
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 1199 CCGGTTTGGTTTTGAATCCGTATGGAGGGAGTTTAAACGTGACCGCAGTGAATGCAACGG 1258
Query 1291 CGTTTCCGCATCGGCACAAACTATATAAGATCCAGCATTCGGCGACTTGGCCTGATGCTG 1350
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1259 CGTTTCCGCATCGGCACAAACTATATAAGATCCAGCATTCGGTGACTTGGCCCGATGCTG 1318
Query 1351 GACCGGAAGCGGAAAGACTCTATATTGGTAATTTAAGAACGACCTATAA-ATTCATGACT 1409
||||||||||||||||||| || |||||||||||||||||||| ||||| ||| ||||||
Sbjct 1319 GACCGGAAGCGGAAAGACTTTACATTGGTAATTTAAGAACGACTTATAATATT-ATGACT 1377
Query 1410 CCGTTTGTGTCGAAGAATCCTCGAAGTTCGTATTTGAACTATAGGGATATTGATATCGGG 1469
|||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 1378 CCGTTTGTGTCGAAAAATCCTAGGAGTTCGTATTTAAACTATAGGGATATTGATATCGGG 1437
Query 1470 GTTAATGATCATGGAGTGGATAGTTATCGAAAGGGAGAAATCTACGGGAGGAAGTATTTT 1529
|||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1438 GTTAATGATCATGGAGCGGATGGTTATCGAAAGGGAGAAATCTATGGGAGGAAGTATTTT 1497
Query 1530 GGCGAGAATTTTGATCGATTGGTTCGTGTTAAAACGGCTGTTGATCCGGATAATTTCTTT 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGCGAGAATTTTGATCGATTGGTTCGTGTTAAAACGGCTGTTGATCCGGATAATTTCTTT 1557
Query 1590 AGAAATGAGCAGAGTATACCAACTTTACCTCCAAATAGAAGATAG 1634
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1558 AGAAATGAGCAGAGTATACCAACTTTACCTCCTAATAGAAGATAG 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81726487260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5