BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922143
Length=691
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30750.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 806 0.0
> AT1G30750.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl,
root, pollen tube; Has 1177 Blast hits to 607 proteins in
189 species: Archae - 0; Bacteria - 312; Metazoa - 195; Fungi
- 185; Plants - 27; Viruses - 16; Other Eukaryotes - 442
(source: NCBI BLink). | chr1:10904907-10905709 REVERSE LENGTH=803
Length=803
Score = 806 bits (436), Expect = 0.0
Identities = 597/668 (89%), Gaps = 37/668 (6%)
Strand=Plus/Plus
Query 21 aaaaTGGATAGGAAATTCGCCAAAACCGGGAGATGTATGCTTACAATCATTCTTCTGTGC 80
|||||||| | |||||||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 19 AAAATGGACATGAAATTCGCCAAAACCGGGAGATGTATGCTCACAATCATT-TTC--TGC 75
Query 81 CTTCTGGTTTCATCATTTTCAGAGGCTGCACAAGTAACCCAAATCACCACACCATTAGAA 140
|||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 76 CTTCTGGTATCATCAATTTCAGAGGCTGCACAAGTAACCAAAATCACCACACCATTAGAA 135
Query 141 CCAACAGGAGTCATCAATTCACCAACAAAGCCACAAGTGAACCAGAACCAACCAATTCTT 200
|||||||||| | | ||| | ||||||||||||||||||||||||
Sbjct 136 CCAACAGGAG-----GAGT--------AAG---C--GTGAACCAGAACCAACCAATTCTT 177
Query 201 GGTCAGCCATCTTCTTCTTCTCCTGTAAACCAGCCTTTAACCGGGTTAAGCCAACCATTA 260
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGTCAACCTTCTTCTTCTTCACCTGTAAACCAGCCTTTAACCGGGTTAAGCCAACCATTA 237
Query 261 ACCGGATTTAATCAGCCATCATCAACTGGACT-AAGCCAACCAATTCTTGGTCAGCCATC 319
| |||||| ||||| || ||||||||||| | ||| |||||||||||||||||||||||
Sbjct 238 ATCGGATTCAATCAACCTTCATCAACTGGTTTGAAG-CAACCAATTCTTGGTCAGCCATC 296
Query 320 TACTTCTTCTTCTGTAAACCAGCCATTAACCGGGTTAAATCAACCATTAACTGGGTTTAA 379
|||||||||||| ||||||||||| ||||||||| |||||||||||||||| || |||||
Sbjct 297 TACTTCTTCTTCGGTAAACCAGCCTTTAACCGGGATAAATCAACCATTAACCGGATTTAA 356
Query 380 TCAGCCATCATCAACTGGACTCAACCAA-CCAATTCTTGGTCAGCCA--T-CTTCTTC-T 434
|||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||| |
Sbjct 357 TCAGCCATCATCAACTGGACTCAA-CAATCCAATTCTTGGTCAGCCATCTACTTCTTCTT 415
Query 435 --CTAAACCAACCTTTAACCGGGTTTAATCAACCATCATCAACTGGATTCAACCAACCGA 492
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CCCTTAACCAACCTTTAACCGGGTTTAATCAACCATCATCAACTGGATTCAACCAACCGA 475
Query 493 TTTCTTCTTCGTCCTCTTC-T--TC-T--GCTCAAAACCAGCCCTTTACGAATCGACTCA 546
||||||| || || ||||| | || | |||||||| || |||||||||||||||||||
Sbjct 476 TTTCTTCGTCTTCTTCTTCATCATCATCTGCTCAAAATCAACCCTTTACGAATCGACTCA 535
Query 547 ACCAGAACAATCTCTCGGGCGTTCCATTTCTTAATGGAAATTCAAAGTTGAAGATCTCCG 606
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 536 ACCAGAACAATCTCTCTGGCGTTCCATTTCTTAATGGAAATTCAAAGTTGAAGGTCTCCG 595
Query 607 GCACAAAGATTGTGTTTATCTGGATTGGTCTTTTCCTTGCTTTGCACGGTACTGATAGGA 666
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 GCACAAAGATTATCTTTATCTGGATTGGTCTTTTCCTTGCTTTGCACGGTACTGACAGGA 655
Query 667 ACTAAACC 674
||| ||||
Sbjct 656 ACTGAACC 663
Score = 243 bits (131), Expect = 2e-63
Identities = 167/184 (91%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 185 GAACCAACCAATTCTTGGTCAGCCATCTTCTTCTTCTCCTGTAAACCAGCCTTTAACCGG 244
||| |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 270 GAAGCAACCAATTCTTGGTCAGCCATCTACTTCTTCTTCGGTAAACCAGCCTTTAACCGG 329
Query 245 GTTAAGCCAACCATTAACCGGATTTAATCAGCCATCATCAACTGGACT-AAGCCAA-CCA 302
| ||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 330 GATAAATCAACCATTAACCGGATTTAATCAGCCATCATCAACTGGACTCAA--CAATCCA 387
Query 303 ATTCTTGGTCAGCCATCTACTTCTTCTTCTGTAAACCAGCCATTAACCGGGTTAAATCAA 362
||||||||||||||||||||||||||||| | ||||| || ||||||||||| ||||||
Sbjct 388 ATTCTTGGTCAGCCATCTACTTCTTCTTCCCTTAACCAACCTTTAACCGGGTTTAATCAA 447
Query 363 CCAT 366
||||
Sbjct 448 CCAT 451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33455941902
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5