BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922155

Length=304
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29740.1 | Symbols:  | Leucine-rich repeat transmembrane pro...   126    1e-28


> AT1G29740.1 | Symbols:  | Leucine-rich repeat transmembrane protein 
kinase | chr1:10407379-10412997 REVERSE LENGTH=3237
Length=3237

 Score =  126 bits (68),  Expect = 1e-28
 Identities = 100/115 (87%), Gaps = 4/115 (3%)
 Strand=Plus/Plus

Query  34    TTACTAGATGGAACATTGATTGCGATAAAGAAGCTATCTTCCAAATCATGTCAAGGCAC-  92
             |||| | ||||||| ||||||||| | |||||||||||||||||||||||||||||||  
Sbjct  2086  TTACCAAATGGAACGTTGATTGCGGTCAAGAAGCTATCTTCCAAATCATGTCAAGGCAAT  2145

Query  93    AAAGA-TTTGTAAACGAGATCAGTATGATCACTTGCCCCTGCAGCACCCGAATCT  146
             ||||| ||| ||||||||||| |||| ||| |||| |  ||||||||||||||||
Sbjct  2146  AAAGAGTTTATAAACGAGATCGGTATAATCGCTTGTC--TGCAGCACCCGAATCT  2198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14074969720


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5