BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922159
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30814.1 | Symbols: | unknown protein; Has 35333 Blast hits... 680 0.0
> AT1G30814.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:10942648-10944727
REVERSE LENGTH=1511
Length=1511
Score = 680 bits (368), Expect = 0.0
Identities = 586/686 (85%), Gaps = 35/686 (5%)
Strand=Plus/Plus
Query 16 AGAGCTATGCAAGACCATTACAA-AGCTATACTGGAAGAGAGACTAAATTATCT-CCTAA 73
||||||||| |||||||| | || ||||||||||||||| ||| | || ||| | ||||
Sbjct 410 AGAGCTATGAAAGACCATGA-AAGAGCTATACTGGAAGAAAGAATTAACTAT-TACCTAG 467
Query 74 CAAAAAGAACC----G-TTTG-TTATGCTGAGCTTGATACAGGAGGCAAAAGAATCGAAT 127
| ||| | ||| | ||| || ||||||||||||||| ||||| |||| ||||||||
Sbjct 468 CGAAACGTACCGAAAGAATTGTTTTTGCTGAGCTTGATACTGGAGGAAAAATAATCGAAT 527
Query 128 GTCCAAATTGTCACGTTCAAATTATTCCTACTCTTGGAAATTGGATTTCGGATAAGTTTC 187
|||||||||||||||||||| ||| ||||||||| ||||| ||||| |||||||||||
Sbjct 528 GTCCAAATTGTCACGTTCAATTTACTCCTACTCTCGGAAACTGGATCGCGGATAAGTTTG 587
Query 188 CATGTAAAAGCTGCAAAGCTAACTTATCTTTTAAAAACAGCACAGCAAAAACCGCAAGAT 247
||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 588 CATGTAAAAGCTGCAAAGCTAACTTATCTTTTAGAAACAGCACAGCAAAAACAGCGAGAT 647
Query 248 GTCCTTGTCGTAATATTTCACGTCCTGTGCCAAACAATCTTATAATGCTTGAGTGTGGTG 307
|||||||| ||| ||| ||||||||||||||||||||| ||| |||||||| |||||| |
Sbjct 648 GTCCTTGTTGTACTATCTCACGTCCTGTGCCAAACAATTTTACAATGCTTGTGTGTGGCG 707
Query 308 GATGTCAAGCGAGAGTGGTTCATCAAAAAAGTGATAAAACTGTGAAATGTTCTGAGTGCA 367
|||||| || ||| || |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 708 GATGTCCAGTGAGCGTCGTTCATCAAAAACGTGATAAAACTGTGAAATGTTCTGAGTGCA 767
Query 368 AACATATCAATATTCCAACTGTTGGAAGAACTTATGGGGTTCGTCCAGAGAACCAAGCTC 427
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 768 AACATATCAATATTCCAACTTTTGGAAGAACTTATGGGGTTCGTCCAGAGAACCAAGCTC 827
Query 428 --C-TCCGCAAGTTTACCAGATTGTTCCTCCTCAAGTTAACCAAG-ATCTTAACC--AGG 481
| |||||||||||||| ||||||||||||||||| |||| | | || || | |
Sbjct 828 GTCCTCCGCAAGTTTACCGGATTGTTCCTCCTCAAGGTAACGGGGTAGCTCCTCCTCAAG 887
Query 482 TTCCTCCTCAAGTTAA-CC---AAGGTTACCGGGTTGTTCCTATTCCTCAAGTTAACAAG 537
| || ||| | || ||| ||||| |||||||||||||||||||||||||||
Sbjct 888 ATAA-CC--AAGATGGTCCGCGAAG-TTACCAAGTTGTTCCTATTCCTCAAGTTAACAAG 943
Query 538 GATCTTCCTCAAACTTACAAGCTTGTTCCTTGTAACCGTAACGGGGTTGTTTCTCCTCAA 597
|||||||||||||||||| | |||||||||||| | ||||||| ||| | | ||||
Sbjct 944 GATCTTCCTCAAACTTACCACCTTGTTCCTTGT--C-GTAACGGAGTT----C-C-TCAA 994
Query 598 GTTAACCAAGATCCTTCG-CAACTTTACCAGGTTGTTCCTCGTCAAGATAACCAGGTTCC 656
|||||||||||||||||| || ||||||| |||||||||||||||| |||| |||||||
Sbjct 995 GTTAACCAAGATCCTTCGACAT-TTTACCAAGTTGTTCCTCGTCAAGTTAACGAGGTTCC 1053
Query 657 TCCGCAAGTTAACCGGGTTATTCCTC 682
||||||||||||||| ||| ||||||
Sbjct 1054 TCCGCAAGTTAACCGAGTTGTTCCTC 1079
Score = 383 bits (207), Expect = 2e-105
Identities = 287/323 (89%), Gaps = 15/323 (5%)
Strand=Plus/Plus
Query 583 GTTGTTTCTCCTCAAGTTAACCAAGATCCTTCGCAACTTTACCAG-GTTGTTCCTCGTCA 641
|||||| ||| |||||||||| | | |||| ||||| || ||| | |||||||||||||
Sbjct 1025 GTTGTTCCTCGTCAAGTTAACGAGGTTCCTCCGCAAGTTAACC-GAGTTGTTCCTCGTCC 1083
Query 642 AGATAACCAGGTTCCTCCGCAAGTTAACCGGGTTATTCCTCCTCGAGTTTACCAGCGGAG 701
|| |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1084 AGCTAACGAGGTTCCTCCGCAAGTTAACCGGATTGTTCCTCCTCGAGTTTACCAGCGGAG 1143
Query 702 GAACCATGGAGCAACTCCTGAAACTGAATCAACTGCGAGTTCTTCTTTCAATCCAA-GAC 760
||||| || ||||||| |||||||||||||||||||||||||||||||||||| || | |
Sbjct 1144 GAACCGTGCAGCAACTGCTGAAACTGAATCAACTGCGAGTTCTTCTTTCAATCAAAAG-C 1202
Query 761 CTGAGATCATTGTAGTTGAATACCCTGATGATACTGTTGCTGAAACTGTGAGGAATG-TT 819
|||||||||||||||||||||||||||||||| |||| |||||||||||||| |||| ||
Sbjct 1203 CTGAGATCATTGTAGTTGAATACCCTGATGATTCTGTAGCTGAAACTGTGAG-AATGGTT 1261
Query 820 GCAATCaa-gagagaagtagaag-a-a----gacaagacagaagaagcaggaagcaagaa 872
|||| ||| ||||| |||||||| | | |||||||||||||||||||||| ||||||
Sbjct 1262 GCAA-CAAAGAGAGTAGTAGAAGTAGAACAAGACAAGACAGAAGAAGCAGGAAACAAGAA 1320
Query 873 gaTTCGTCTCTAATCGATT-AAA 894
||||||||||||||||||| |||
Sbjct 1321 GATTCGTCTCTAATCGATTGAAA 1343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5