BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922170 Length=955 Score E Sequences producing significant alignments: (Bits) Value AT1G30850.1 | Symbols: RSH4 | root hair specific 4 | chr1:10985... 1365 0.0 > AT1G30850.1 | Symbols: RSH4 | root hair specific 4 | chr1:10985078-10986295 FORWARD LENGTH=1218 Length=1218 Score = 1365 bits (739), Expect = 0.0 Identities = 890/961 (93%), Gaps = 17/961 (2%) Strand=Plus/Plus Query 1 ttttttttCCCGTTGAC-AATCTAGTTATGCCTCCTCCGGCAATGCTTACGTTTGACGAT 59 |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 12 TTTTTTTTTTCGTTGACAAATCTAGTTATGCCTCCTCCGGCAATGCTTGCGTTTGACGAT 71 Query 60 GGTTTAGCCCGGAAATCTAACGACAATGAGTGGCAAGGTTTCAGAGTTTTTCCCGGAGAA 119 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 72 GGTTTAGCCCGGAAATCTAACGATAATGAGTGGCAAGGTTTCAGAGTTTTTCCAGGAG-- 129 Query 120 AACAAAAACCCTAACCCTTACCCTGATTTCAATTTCTTGGTTAAGAAGGCAATTCTGCAT 179 | ||| | |||||||| ||||| || | ||||||||||||||||||||||||||||| Sbjct 130 -A-AAATA--CTAACCCTAACCCTAATATAAATTTCTTGGTTAAGAAGGCAATTCTGCAG 185 Query 180 AGCGAGAAATCAACCAATCCTCTTTTCTCCCGTTCTTCGACAAGAGACGATAGCTTCAAG 239 | ||||||||||| || |||||||||||||||||| ||| ||||||| ||||||||| || Sbjct 186 AACGAGAAATCAATCACTCCTCTTTTCTCCCGTTCGTCGGCAAGAGATGATAGCTTC-AG 244 Query 240 -ATTGTGTTGCCGCCTGCGATGCCTCCTCCTAGAGACTCCGCAGTTCCGCTTCCTATGCT 298 |||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||| Sbjct 245 AATTGTGTTGCCGCCGGCGTTGCCTCCTCCTAGAGACTCCACCGTTCCGCTTCCTATGCT 304 Query 299 CCCGGAGCCGATGAGAGTCCGGAAGAAGCTTAGCCACCAAGAATCAGTCATATTTATGA- 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 305 TCCGGAGCCGATGAGAGTCCGGAAGAAGCTTAGCCACCAAGAATCAGTCATATTTATGAG 364 Query 358 CGAAATCGCGTTACTCAGAGAAGATTCTCTACAAGAAAGAAGATTTCAAATGTAACGCCT 417 | |||||||||| | ||||||| || ||||||||| |||||||||||||||||||||||| Sbjct 365 C-AAATCGCGTTTCGCAGAGAAAATCCTCTACAAGGAAGAAGATTTCAAATGTAACGCCT 423 Query 418 TCTGCTTGTCTCTACCTAGCTTCGGGAAA-AACAAGCC-AGTTAGATCTTCTTCGAAACG 475 ||||||||||||||||| ||||||| ||| ||||||| | ||||||||||||||||||| Sbjct 424 TCTGCTTGTCTCTACCTGGCTTCGG-AAAGAACAAGCTGA-TTAGATCTTCTTCGAAACG 481 Query 476 CCAAGATTCGATGG-GAAAGAAGATGATTAGAGCTTCTTCCTTCACGGGATCAACTGTTT 534 |||| |||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 482 CCAAAATTCTATGGAGAA-GAAGATGATCAGAGCTTCTTCCTTCACGGGATCAACTGTTT 540 Query 535 CTGTACGCGCCTCGCTAGAGAAATTCGAATGCGGTTCTTGGGCATCGACGACAGCTCTGA 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 541 CTGTACGCGCCTCGCTAGAGAAATTCGAATGCGGTTCTTGGGCATCGACGACAGCTCTTA 600 Query 595 TTCAAGATAACGGTCGGTTGTTTTTCGATCTTCCGATGGAGATGACGAAATGCAACAGCC 654 ||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||||| Sbjct 601 TTCAAGATAACGGTCGGTTGTTTTTCGATTTTCCGGTTGAGATGACGAAGTGCAACAGCC 660 Query 655 GCGGTGGAAACGGAGGAAGAGATGTGCAAGAACCGGTGACTTCCGGATTCTTGTTCGATA 714 |||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||| Sbjct 661 GCGGTGGAAATGGAGGAAGAGATGTGCAAGAACCGGTGACCTCTGGTTTCTTATTCGATA 720 Query 715 GAGAAACAGAGACTTTGGCTCTTAGAAGCGTTTTAAAGACGAGGAGTACTCGAGATCACC 774 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 721 GAGAAACAGAGACTTTGGCTCTGAGAAGCGTTTTAAAGACGAGGAGTACTCGTGATCACC 780 Query 775 GGCGATCAGCTGAGACTTCACCGCAACGTCGTGTAAGATTCTCGACTTCGTCTGCATCGG 834 || ||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||| Sbjct 781 GGAGATCAGCTGAGTCTTCACCGCAACGTCGTGTTAGGTTCTCGACTTCGTCTTCATCGG 840 Query 835 CTTCAGTTTCGTGCCCTACTTCGCCGCGAACTTGTATCACTCCACGTTTGCGTAAGGCTA 894 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 841 CTTCAGTTTCGTGCCCTACTTCGCCTCGAACTTGTATCACTCCACGTTTGCGTAAGGCTA 900 Query 895 GAGATGACTTCAATACCTTCTTAACCGCACAAAACTCTTGAATAAGGAAACCAAAAACAG 954 ||||||||||||| |||||||| |||||||||||| |||||||||||||| ||||||||| Sbjct 901 GAGATGACTTCAACACCTTCTTGACCGCACAAAACGCTTGAATAAGGAAAACAAAAACAG 960 Query 955 A 955 | Sbjct 961 A 961 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46717756710 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5