BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922170
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30850.1 | Symbols: RSH4 | root hair specific 4 | chr1:10985... 1365 0.0
> AT1G30850.1 | Symbols: RSH4 | root hair specific 4 | chr1:10985078-10986295
FORWARD LENGTH=1218
Length=1218
Score = 1365 bits (739), Expect = 0.0
Identities = 890/961 (93%), Gaps = 17/961 (2%)
Strand=Plus/Plus
Query 1 ttttttttCCCGTTGAC-AATCTAGTTATGCCTCCTCCGGCAATGCTTACGTTTGACGAT 59
|||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 12 TTTTTTTTTTCGTTGACAAATCTAGTTATGCCTCCTCCGGCAATGCTTGCGTTTGACGAT 71
Query 60 GGTTTAGCCCGGAAATCTAACGACAATGAGTGGCAAGGTTTCAGAGTTTTTCCCGGAGAA 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 72 GGTTTAGCCCGGAAATCTAACGATAATGAGTGGCAAGGTTTCAGAGTTTTTCCAGGAG-- 129
Query 120 AACAAAAACCCTAACCCTTACCCTGATTTCAATTTCTTGGTTAAGAAGGCAATTCTGCAT 179
| ||| | |||||||| ||||| || | |||||||||||||||||||||||||||||
Sbjct 130 -A-AAATA--CTAACCCTAACCCTAATATAAATTTCTTGGTTAAGAAGGCAATTCTGCAG 185
Query 180 AGCGAGAAATCAACCAATCCTCTTTTCTCCCGTTCTTCGACAAGAGACGATAGCTTCAAG 239
| ||||||||||| || |||||||||||||||||| ||| ||||||| ||||||||| ||
Sbjct 186 AACGAGAAATCAATCACTCCTCTTTTCTCCCGTTCGTCGGCAAGAGATGATAGCTTC-AG 244
Query 240 -ATTGTGTTGCCGCCTGCGATGCCTCCTCCTAGAGACTCCGCAGTTCCGCTTCCTATGCT 298
|||||||||||||| ||| |||||||||||||||||||| | |||||||||||||||||
Sbjct 245 AATTGTGTTGCCGCCGGCGTTGCCTCCTCCTAGAGACTCCACCGTTCCGCTTCCTATGCT 304
Query 299 CCCGGAGCCGATGAGAGTCCGGAAGAAGCTTAGCCACCAAGAATCAGTCATATTTATGA- 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TCCGGAGCCGATGAGAGTCCGGAAGAAGCTTAGCCACCAAGAATCAGTCATATTTATGAG 364
Query 358 CGAAATCGCGTTACTCAGAGAAGATTCTCTACAAGAAAGAAGATTTCAAATGTAACGCCT 417
| |||||||||| | ||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 365 C-AAATCGCGTTTCGCAGAGAAAATCCTCTACAAGGAAGAAGATTTCAAATGTAACGCCT 423
Query 418 TCTGCTTGTCTCTACCTAGCTTCGGGAAA-AACAAGCC-AGTTAGATCTTCTTCGAAACG 475
||||||||||||||||| ||||||| ||| ||||||| | |||||||||||||||||||
Sbjct 424 TCTGCTTGTCTCTACCTGGCTTCGG-AAAGAACAAGCTGA-TTAGATCTTCTTCGAAACG 481
Query 476 CCAAGATTCGATGG-GAAAGAAGATGATTAGAGCTTCTTCCTTCACGGGATCAACTGTTT 534
|||| |||| |||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 482 CCAAAATTCTATGGAGAA-GAAGATGATCAGAGCTTCTTCCTTCACGGGATCAACTGTTT 540
Query 535 CTGTACGCGCCTCGCTAGAGAAATTCGAATGCGGTTCTTGGGCATCGACGACAGCTCTGA 594
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 CTGTACGCGCCTCGCTAGAGAAATTCGAATGCGGTTCTTGGGCATCGACGACAGCTCTTA 600
Query 595 TTCAAGATAACGGTCGGTTGTTTTTCGATCTTCCGATGGAGATGACGAAATGCAACAGCC 654
||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||
Sbjct 601 TTCAAGATAACGGTCGGTTGTTTTTCGATTTTCCGGTTGAGATGACGAAGTGCAACAGCC 660
Query 655 GCGGTGGAAACGGAGGAAGAGATGTGCAAGAACCGGTGACTTCCGGATTCTTGTTCGATA 714
|||||||||| ||||||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 661 GCGGTGGAAATGGAGGAAGAGATGTGCAAGAACCGGTGACCTCTGGTTTCTTATTCGATA 720
Query 715 GAGAAACAGAGACTTTGGCTCTTAGAAGCGTTTTAAAGACGAGGAGTACTCGAGATCACC 774
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 721 GAGAAACAGAGACTTTGGCTCTGAGAAGCGTTTTAAAGACGAGGAGTACTCGTGATCACC 780
Query 775 GGCGATCAGCTGAGACTTCACCGCAACGTCGTGTAAGATTCTCGACTTCGTCTGCATCGG 834
|| ||||||||||| ||||||||||||||||||| || ||||||||||||||| ||||||
Sbjct 781 GGAGATCAGCTGAGTCTTCACCGCAACGTCGTGTTAGGTTCTCGACTTCGTCTTCATCGG 840
Query 835 CTTCAGTTTCGTGCCCTACTTCGCCGCGAACTTGTATCACTCCACGTTTGCGTAAGGCTA 894
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 841 CTTCAGTTTCGTGCCCTACTTCGCCTCGAACTTGTATCACTCCACGTTTGCGTAAGGCTA 900
Query 895 GAGATGACTTCAATACCTTCTTAACCGCACAAAACTCTTGAATAAGGAAACCAAAAACAG 954
||||||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 901 GAGATGACTTCAACACCTTCTTGACCGCACAAAACGCTTGAATAAGGAAAACAAAAACAG 960
Query 955 A 955
|
Sbjct 961 A 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5