BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922179
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 824 0.0
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 494 2e-138
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 198 2e-49
AT3G56890.1 | Symbols: | F-box associated ubiquitination effec... 139 9e-32
AT1G47350.1 | Symbols: | F-box associated ubiquitination effec... 137 3e-31
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 111 2e-23
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 106 9e-22
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 102 1e-20
AT1G47300.1 | Symbols: | F-box family protein | chr1:17339561-... 95.3 2e-18
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 86.1 1e-15
AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-... 78.7 2e-13
AT1G33010.1 | Symbols: | F-box and associated interaction doma... 62.1 2e-08
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 824 bits (446), Expect = 0.0
Identities = 553/605 (91%), Gaps = 6/605 (1%)
Strand=Plus/Plus
Query 306 ATGGCTTATCCATCTGGTCCTGATGATCATAAAATTCTGACCTTGGGAACTCGAAAAATG 365
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1 ATGGCTTATCCATCTGGTCCTGATGATCATAAAATTCTGACCTTGGGAACTAGAAGAATG 60
Query 366 AGGTGGAGGAAA-ATCCATTGTCCCTTAACTCATGATCCTTTTTGTGGAGGGATATGCAT 424
|||||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AGGTGGAG-AAAGATCCATTGCCCCTTAACTCATGATCCTTTTTGTGAAGGGATATGCAT 119
Query 425 CAATGGGGTTTTTTATTACTTAGCTATCAAAAGTGATGAAACCTTGGTTAAT-AGAAGAT 483
|||||||||||| ||||||||||||||| ||| ||||||| |||||||||| | ||| |
Sbjct 120 CAATGGGGTTTTATATTACTTAGCTATCCAAATTGATGAACCCTTGGTTAACCA-AAGGT 178
Query 484 CTTATGTCATAGTTTGCTTTGATGTTAGATTTGAGAAATTCAAGTTCATCGACGTAGAAT 543
||| ||| |||||||||||||||||||||||||| ||||||| |||||| |||||||| |
Sbjct 179 CTTTTGTGATAGTTTGCTTTGATGTTAGATTTGAAAAATTCACGTTCATTGACGTAGATT 238
Query 544 GCTTTTATCATTTAATAAATTATAAGGGAAAATTAGGCGGGATTAATTGGAATTATGCTA 603
||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||| ||
Sbjct 239 GCTTTTATCATTTGATAAATTATAAGGGAAAATTAGGTGGGATTGATTGGAAACATGGTA 298
Query 604 GCGCTGATGGAAGTCGTACCTTTGAGTTGAGAATGTGGGTTCTAGATGATGCCGAGAAAC 663
|||| ||||||||||||||||||||||||| ||||||||||| || |||| ||||||||
Sbjct 299 ACGCTAATGGAAGTCGTACCTTTGAGTTGAGTATGTGGGTTCTTGAGGATGTCGAGAAAC 358
Query 664 ATGAATGGTCGATATATGACTACACTTTTCCCGAACATGAAGTCTTTTTCTACAATATTG 723
|||||||||||| ||| |||| |||||||| || |||||||| | ||||||||||||
Sbjct 359 ATGAATGGTCGAAATACGACTGCACTTTTCTTGAGTATGAAGTCATGTTCTACAATATT- 417
Query 724 T-TCTTGCCGTTGGGATGGCTGCTACATGTGAAATTGTTTTGTCGGAGAAGTTTACATCG 782
| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 TCTCTTGCCGTTGGGATGACTGCTACATGTGAAATTGTTTTGTCGGAGAAGTTTGCATCT 477
Query 783 AAACCGTTTTATGTCTTCTACTTCAATCCAGAAAGAGACACTCTCCAAAGAGTTGAAATC 842
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 478 AAATCGTTTTATGTCTTCTACTTCAATCCCGAAAGAGAAACTCTCCAAAGAGTTGAAATC 537
Query 843 CAAGGATTGGAGAATCACTGTAGAGTTTACACTATTGCAGACCATGTAGAGGATCTTAAT 902
||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||
Sbjct 538 CAAGGATTGGAGAATCATTGTAGAGTTTACACTATTACAGACCATGTCGAGGATCTTAAT 597
Query 903 GTTAA 907
|||||
Sbjct 598 GTTAA 602
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 494 bits (267), Expect = 2e-138
Identities = 683/874 (78%), Gaps = 68/874 (8%)
Strand=Plus/Plus
Query 1007 CTATGCCTCTGGTTTGATCTATTTTCATAATATGTGCATCCCAAGGGAGGATGAGGATAC 1066
||||||||||||||||||||||||| | || |||| |||||||| ||| ||||||||| |
Sbjct 309 CTATGCCTCTGGTTTGATCTATTTTTAAAAAATGTTCATCCCAAAGGAAGATGAGGATGC 368
Query 1067 AAAGCGTGTGATATGTAACCCTAC-CACCGGACAGTATGTGATCTTACCTGAACTGAGAA 1125
|||||||||| | ||| ||||| | ||| || ||||||||||||||||||||||| ||
Sbjct 369 AAAGCGTGTGTTGTGTGACCCT-CTCACTGGCCAGTATGTGATCTTACCTGAACTTAG-- 425
Query 1126 AGCACTTCATGTCGTACAGCTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTAT 1185
|| | | | ||||| |||||||||||||||||||| || || ||||||||||||||||
Sbjct 426 AGTAGGTGGT-TCGTATAGCTATTTAGGGTTTGATCCGATTGATAAGGAATTCAAGGTAT 484
Query 1186 TGCTCATGAACACTAGTGGTTATATAGCTTATAATGAT-ACAGATCATCATATTTTGACA 1244
|| ||||| | ||| ||| || |||||||| || ||| | ||||||| |||||||||||
Sbjct 485 TGTTCATGGATACTTGTGATTTTATAGCTTCGAAGGATGA-AGATCATTATATTTTGACA 543
Query 1245 TTAGGAACTGGAAAAATGAGGTGGAGAAAGATTCAGTGTCCTTTTAAC-CATGAGCCTTT 1303
|| ||||||||| || ||| |||||| ||||| || ||||||||| || |||||||||||
Sbjct 544 TTGGGAACTGGAGAATTGAAGTGGAGGAAGATCCAATGTCCTTTT-ACACATGAGCCTTT 602
Query 1304 TTGGGAAAGGATATGCATCAATGGGGTTTTGTATTACAAAGC-T-C-A-CCAG-TT-TGA 1357
|||||| ||||||||||| |||||||||||||||||| || | | | | | || | |
Sbjct 603 TTGGGAGAGGATATGCATTAATGGGGTTTTGTATTACTCTGCTTACTATTCTGATTCTAA 662
Query 1358 TGGAAGGTCTTATGTAATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCAAGTTCATTGA 1417
|||||||||| || | |||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 663 TGGAAGGTCTCATCTCATAGCTTGCTTTGATGTTAGGTCTGAGAAATTCAATTTCATAGC 722
Query 1418 GGCAACATTTTGTAATATGTTTACTCAATTGATAAACTATAAGGGTAAATTAGGTGTGG- 1476
||| | | | || | | ||| ||||||||||||||||| |||||| ||| ||
Sbjct 723 CACAAAACATCGG--TACG---A-TCAGTTGATAAACTATAAGGGGAAATTATGTG-GGA 775
Query 1477 TTAATTTGAAGAATGTTGATGATGGTACAAGTTT-TAGGCATACCCT-TGA-GTTTCGTA 1533
|||||||| || ||| | | | | || ||| | || || ||| | | ||| |||
Sbjct 776 TTAATTTGGAGTATGCT-A-G--G---CATGTTGGT-GG-ATTTCCTGTTAAGTTGAGTA 826
Query 1534 TGTGGGTTCTGGAGCATGTTGAGAAAATGGAATGGTCGGAATATGTCTACACTTTGTTGG 1593
|||||||| | ||| |||| |||||| |||||||||| || |||||||| |||||| ||
Sbjct 827 TGTGGGTTTTAGAGGATGTCGAGAAACCGGAATGGTCGAAACATGTCTACTCTTTGT-GG 885
Query 1594 ATAGTA-A-TGAAG-CAGCTGATGATCTTGTTGTTGA-TCTTGT-TGTTGTC-GGGATGA 1647
| | | | ||||| | | | | | | | | || |||| | |||| || |||||||
Sbjct 886 ACGG-AGAGTGAAGTC-GTTAAGG-T-TAACCG--GAATCTT-TCTGTT-TCTGGGATGA 937
Query 1648 CTGCTACTGGTGATATTATTTTGTCGAAG-ATAGATACATGTGAA-CCGATTTATGtttt 1705
|||| || ||||| ||| |||| |||| | | |||| || | || ||| ||||||||||
Sbjct 938 CTGCAACCGGTGACATTGTTTTATCGATGGA-AGATGCAACT-AATCCGTTTTATGTTTT 995
Query 1706 tttCTTCAATCCCGAAAGGAAAACT-T-----TCCAAAGTGTTGAAATCCAAGGTTTTGG 1759
||||||||| || ||||| ||| | ||||||||||||||||||||||| ||||
Sbjct 996 CAACTTCAATCCGGATAGGAACACTCTCCAAGTCCAAAGTGTTGAAATCCAAGGTCTTGG 1055
Query 1760 AGCTAATCGTGATTGCAGAGTTTACC---CCTTTGTAGACTATGTAGATGATCTTAGC-T 1815
||||||||||||| || || || || ||||||| ||||||||||| ||| |||| |
Sbjct 1056 AGCTAATCGTGATCACATAGCTTGCCATGCCTTTGTTGACTATGTAGAAGATTTTAGTGT 1115
Query 1816 TAAACCATGCAAAGC---AACTCAAGTCAAGCCC 1846
|| | ||||| || ||||||||||||||||
Sbjct 1116 TAG-CGATGCAGTGCTGCAACTCAAGTCAAGCCC 1148
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 198 bits (107), Expect = 2e-49
Identities = 460/617 (75%), Gaps = 77/617 (12%)
Strand=Plus/Plus
Query 1231 ATCATATTTTGACATTAGGAACTGGAAAA-ATGAGGTGGAGAAAGATTCA-GTGT-CCTT 1287
|||||||| |||||||||||||| ||||| |||||||||| ||||| | ||| ||||
Sbjct 317 ATCATATTCTGACATTAGGAACT-GAAAATGTGAGGTGGAGGGAGATT-ATATGTCCCTT 374
Query 1288 TTAACCATGAGCCTTTTTGGG-AAAG--GATATGCATCAATGGGGTTTTGTATTACA-AA 1343
|| | |||| ||| | ||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 375 TTCA-TATGATCCTCCTCGGGAAAAGCCGATATGCATCAATGGGGTTTTGTATTACATAA 433
Query 1344 GC-TCACCAGTTTGATGGAAGGTCTTATGTAATAGTTTGCTTTGATGTTAGGTCTGAGAA 1402
| || |||| || | || | || ||| ||||||||||||||||||||||||
Sbjct 434 GTGTCGGTAGTT--ATT-AT--TCAC-T-TA-TAGGTTGCTTTGATGTTAGGTCTGAGAA 485
Query 1403 ATTCAAGTTC--AT-TG-AGGCA-ACATT--TTGT--AATA-TGTT-TACTCAATTGATA 1451
||||||||| || | | || | ||| || | || | || | || ||||||||
Sbjct 486 ATTCAAGTTTTTATATCTAAGCCCAGATTGCTT-TCCAA-ACTGGTCTAGAAAATTGATA 543
Query 1452 AACTATAAGGGTAAATTAGGTGTGG-T-TAATTTGAAGAATGTTGATGATGGTACAAGTT 1509
|||||||||||||||||||||||| | |||| ||||| | | || ||||| | ||
Sbjct 544 AACTATAAGGGTAAATTAGGTGTGACTATAATG-GAAGA-T-T--ATCATGGTGGA--TT 596
Query 1510 TTAGGCATACCCTTGAGTTTCGTATGTGGGTTCTGGAGCATGTTGAGAAA-ATGGAATGG 1568
| | ||||| |||| |||||||||||||| ||| |||| |||||| | |||||||
Sbjct 597 T----C---CCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGA-GGAATGG 648
Query 1569 TCG-GAATATGTCTACACTTTGTTGGA-T-AGTAATGAAG-C-AGCTGA-TGATCTTGTT 1622
|| || |||| |||||||||| || | || ||| ||| | || | ||| || |
Sbjct 649 ACGAGA-TATGCCTACACTTTGA-GGCCTGAG-AATAAAGTCGAGGACAATGA-CTA-T- 702
Query 1623 GTTGATCTTGTTGTTGTCGGG-ATGACTGCTACTGGTGATATTATTTTGTCGAAGATAGA 1681
|| || | ||||||| ||| | |||||| | ||||| ||| ||||| |||| | |||
Sbjct 703 GT--ATAT-GTTGTTG--GGGCA--ACTGCTTCAGGTGAAATTGTTTTGACGAA-ACAGA 754
Query 1682 -TACATGTGAACCGATTTATGtttttttCTTCAATCCCGAAAGGAAAACTTTCCAAAGTG 1740
| ||| | ||||| |||||||||| | ||| | ||| |||||||| ||| ||| ||| |
Sbjct 755 ATGCATATAAACCGTTTTATGTTTTCTACTTTAGTCCTGAAAGGAACACTCTCCTAAGCG 814
Query 1741 TTGAAATCCAAGGTTTTGGAGCT-AATCGTGAT-TGCAGA--GTTTACCCCTTTGTAGAC 1796
|||||||||||||| |||||| ||| || | | || | |||||| ||||||||||
Sbjct 815 TTGAAATCCAAGGTGTTGGAGAAGAATGGTTTTAT-CATAATGTTTACTACTTTGTAGAC 873
Query 1797 TATGTAGATGATCTTAG 1813
|||| || ||||||||
Sbjct 874 CATGTCGAGGATCTTAG 890
> AT3G56890.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:21062990-21063717 REVERSE LENGTH=660
Length=660
Score = 139 bits (75), Expect = 9e-32
Identities = 314/420 (75%), Gaps = 54/420 (13%)
Strand=Plus/Plus
Query 1452 AACTATAAGGGTAAATTAGGTGTGGTTAATTTG-AAGAATGTTGATGATGGTACAAGTTT 1510
||||||| ||||||||||| |||| ||| || || ||||||| | |||| |||
Sbjct 196 AACTATATGGGTAAATTAGCTGTGACTAA-GTGCAACTATGTTGACGTTGGTGGAAG--- 251
Query 1511 TAGGCATACCCTTGAGTT-TCGTATGTGGGTTCTGGAGCATGTTGAGAAA-ATGGAAT-G 1567
| | | || ||||||| | || |||||||||| ||| ||||||||||| | ||||| |
Sbjct 252 -A--CGTTCCGTTGAGTTGT-GTTTGTGGGTTCTAGAGGATGTTGAGAAACA-GGAATGG 306
Query 1568 GTCGGAA-TATGTCTACACTTTGTTGGATAGTAATGAAGCAGC-TGATGATCTTGTTGTT 1625
||| || |||||||||||||| || || ||||||| | || | || || |
Sbjct 307 GTC--AAGTATGTCTACACTTTACCGG--AG-AATGAAG-TCCTTG--GTTCCTG-CG-A 356
Query 1626 GATCTTGT-TGTTGTCGGGA-TGACTGCTACTGGTGATATTATTTTGTCG-AAGATAG-A 1681
| | || | |||| | ||| ||||||| | || |||||| |||||| | | || || |
Sbjct 357 G-T-TT-TCAGTTG-CTGGAGTGACTGCAAGAGGCGATATTGTTTTGT-GTATGA-AGTA 410
Query 1682 TACATGTGAACCGAT-TTATGtttttttCTTCAATCCCGAAAGGAAAACTTTCCAAAGTG 1740
||||||| ||||| | ||||| || | |||| ||||||||| |||||| |||||||||
Sbjct 411 TACATGTAAACCG-TACTATGTATTCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTG 469
Query 1741 TTGAAATCCAAGGTTTTGGAGCTAATCGTGA-----TTG--CA--G-----A-GTTTACC 1785
||||||||||||||||||||||||| | ||| ||| || | | |||||
Sbjct 470 TTGAAATCCAAGGTTTTGGAGCTAAGCTTGAAGAGGTTGAGCATCGTGGTGAAGTTTATG 529
Query 1786 CCTTTGTAGACTATGTAGATGATCTTAG-CTTAAACCATGCAAAGCAACTCAAGTCAAGC 1844
||||||| |||||||| || |||||||| || |||| ||||||||||| |||||||||||
Sbjct 530 CCTTTGTTGACTATGTTGAGGATCTTAGTCT-AAACGATGCAAAGCAATTCAAGTCAAGC 588
> AT1G47350.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:17358447-17360722 REVERSE LENGTH=1587
Length=1587
Score = 137 bits (74), Expect = 3e-31
Identities = 258/344 (75%), Gaps = 24/344 (7%)
Strand=Plus/Plus
Query 117 TGTAGCTATGCTTCTGGTTTGGCCTATCTCTCTGATATGAGAAT-ATCAGTGAAGGATGA 175
||| ||||||| |||||| || ||| ||| || |||| | || | || | | ||| |
Sbjct 535 TGTGGCTATGCGTCTGGTATGATGTATTTCTATGGTATGCGGATCA-AAGAGGATGATTA 593
Query 176 GGATGTAGTGCGTGTGATATGTAACCCTATCACGGGAAAGTATACGGTCTTACCT-AAAC 234
|||| ||||| |||| ||||||||||||| |||||| | ||| || ||| ||| |
Sbjct 594 CGATGGAGTGCCTGTGCTATGTAACCCTATAACGGGACATTATGCGACCTTGCCTGCTAT 653
Query 235 TGAGAAGG--TACGTA-AAGTCGTATAG-TTATTTAGTGTTTGATCCAATTGACAAGCAA 290
|| |||| || | | ||| ||| ||| || ||| | || |||||| ||||||||||||
Sbjct 654 TG-CAAGGTTTA-G-ACAAG-CGTTTAGCTT-TTTCGGGTATGATCCGATTGACAAGCAA 708
Query 291 TTCAAGGTATTGTTCATG-----G-CTTATCCATCTGGTCCTGATGATCATAAAATTCTG 344
|||||||||||||||||| | |||| |||| | |||||||| |||||||| |||||
Sbjct 709 TTCAAGGTATTGTTCATGATCATGGCTTACCCATGTAGTCCTGATCATCATAAAGTTCTG 768
Query 345 AC-CTTGGGAACTCGAAAAATGAGGTGGAGGAAAATCCATT-GTCCCTTAACTCATGATC 402
| ||||| || | || ||||||| ||||| || || | || |||||| |||||
Sbjct 769 AAACTTGG-AAGTGGAGAAATGAGTTGGAG-AAGATTAAAACGTACCTTAAGACATGAAA 826
Query 403 CTTTTT-GTGGAGGGATATGCATCAATGGGGTTTTTTATTACTT 445
|| | ||| ||| |||||||||||||||||| | ||||||||
Sbjct 827 -TTATGAGTGAAGGTATATGCATCAATGGGGTTGTGTATTACTT 869
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 111 bits (60), Expect = 2e-23
Identities = 337/461 (73%), Gaps = 57/461 (12%)
Strand=Plus/Plus
Query 1294 ATGAGCCTTTTTGGGAAAG-GATATGCATCAATGGGGTTTTGTATTACAAAG-CTCAC-- 1349
|||| ||||||| |||||| |||||||||||||||||||||||||||| | || |
Sbjct 1 ATGAACCTTTTT-GGAAAGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCT-AGTT 58
Query 1350 CAGTTTGATGGA-AGGTCTTATGTAATAGTTTGCTTT-GATGTTAGGTCTGAGAAATTCA 1407
||| | ||||| | |||| || | |||||| |||| ||| ||||||||||||||||||
Sbjct 59 CAGCTC-ATGGATA--TCTTCTG-A-TAGTTT-CTTTTGATTTTAGGTCTGAGAAATTCA 112
Query 1408 AGTTCATTGAGGCAACATTTTGTAATATGTTT-A-CT-CAA--TTGATAAACTATAAGGG 1462
| || || | ||| || | | | | ||| | || ||| ||||||||||| || ||
Sbjct 113 ATTTTATCAATGCATCAAGCT-TCCTTT-TTTCATCTACAAAATTGATAAACTACAAAGG 170
Query 1463 TAAATTAGGTGTGG-TTAATTTGAAGAATGTTGATGATGGTACAAGTTTTAGGCATACCC 1521
||||||||||| || || ||||| | || | ||| |||| || | | | |||
Sbjct 171 TAAATTAGGTG-GGATTGATTTGGCGTATAATCATGGTGGT----GTAT-A----T-CCC 219
Query 1522 -TTGAGTTTCGTATGTGGGTTCTGGAGCATGTTGAGAAA-ATGGAATGGTCG-GAATATG 1578
||||||| |||||||||||||| ||| |||| |||||| | | |||||||| || |||
Sbjct 220 GTTGAGTTACGTATGTGGGTTCTAGAGGATGTCGAGAAACACG-AATGGTCGAGAC-ATG 277
Query 1579 TCTACACTTTGTTGGATAGTAATGAAG--CAGCTGATG-ATCTTGTTGTTGATCTTGTTG 1635
| ||| ||||| ||| | | |||| |||| | || | || | || ||| |
Sbjct 278 TTTACTCTTTGCCGGAGACCATTGAATTTCAGCAG-TGTAACTACAA-T--AT-TTGC-G 331
Query 1636 TTG-TCGGGATGACTGCTACT-GGTGATATTATTTTGTCGAAG--ATAGATA-C-ATGTG 1689
||| | ||||||| ||||| | ||||| ||| |||| ||| || ||| ||| | | |
Sbjct 332 TTGGT-GGGATGAATGCTA-TAGGTGAAATTGTTTTTTCGGAGTCATATATATCTACATC 389
Query 1690 -AA-CCGATTTATGtttttttCTTCAATCCCGAAAGGAAAA 1728
|| ||| |||||||||| | |||||||||||||| |||||
Sbjct 390 CAAACCGTTTTATGTTTTCTACTTCAATCCCGAAAAGAAAA 430
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 106 bits (57), Expect = 9e-22
Identities = 467/650 (72%), Gaps = 87/650 (13%)
Strand=Plus/Plus
Query 1001 TTGTAGCTATGCCTCTGGTTTGATCTATTTTCATAATATGTGC-ATCCCAAGGGAGGATG 1059
|||||| ||||| ||| ||||||||||||| | ||||||| | |||| || | ||| ||
Sbjct 318 TTGTAGTTATGCTTCTAGTTTGATCTATTTCCCTAATATG-ACGATCCGAAAGAAGGGTG 376
Query 1060 AGGATACA-AAGCGTGTGATATGTAACCCTACCAC-CGG-A-CA---GTATGTGATCTT- 1111
| ||| || | |||||||||||||||||| ||| || | | ||||||||||||
Sbjct 377 ACGAT-CACTTGGGTGTGATATGTAACCCTAGCACAGGGCAGTATGGGTATGTGATCTTA 435
Query 1112 --ACCTGAACT-GA---GAA-AGCACTTCATGT-C-GTACAGCTATTTAGGGTTTGATCC 1162
|||| ||| || || ||| | | | | | ||| | | |||||||||||||||
Sbjct 436 CCACCTTTACTGGATTTCAAGAGC-GTGCCT-TACGGTA-A-ATTTTTAGGGTTTGATCC 491
Query 1163 AATAGACAAGGAATTCAAGGTATTGCTCATGAACACTAGT-GGTTATATAGCTTATA-AT 1220
|| |||||| ||||||||||||| || | | || | | || | | | || | ||
Sbjct 492 GATTGACAAGCAATTCAAGGTATTAATCCCG---A-TATTCGATT-T-T-G-ATAAACAT 543
Query 1221 GATACAGATCATCATATT-TTGACATTAGGAACTGGAAA-A-ATGAGGTGGAGAAAGATT 1277
| || |||||||||||| || ||||||||| || |||| | || ||||||| |||||
Sbjct 544 CAAACGGATCATCATATTCTT-ACATTAGGAGCT-GAAACAGTTG-GGTGGAGGAAGATC 600
Query 1278 CAGTGTCCTTTTAAC-C-ATGAGCCTTTTTGGGAAAGG----ATATGCATCAATGGGGTT 1331
|| | ||| || || | || || | | | || || || |||||||||||| ||
Sbjct 601 CAATCTCC-CTT-ACGCTATCTTCC-TCATAGTAATGGAACAATTTGCATCAATGGGATT 657
Query 1332 TTGTATTACAAAGCTCACCAGTT--TGATGGAA-GG-T-CTTATGTAATAGTTTGCTTTG 1386
||||||||| |||| | | || | ||| || || | |||| ||||||||||||
Sbjct 658 TTGTATTACCTAGCT-A-AAATTAATTATGCAATGGATAAAAATGTGCTAGTTTGCTTTG 715
Query 1387 ATGTTAGGTCTGAGAAATTCAAGTT-C-A--T-TGAGGCAACATTTTGTAATATGTTTAC 1441
|||||||||||||||| || ||| | | | | | || ||| || | | | |||
Sbjct 716 ATGTTAGGTCTGAGAATTTTGTGTTTCTACGTCTTAA-CA-CATACTGC--TCT-TCTAC 770
Query 1442 TCAATTGATAAACTATAAGGGTAAATTAGGTGTGGTTAATTTGAAGA--ATGTTGATGAT 1499
| ||||| |||||||||||||||||||||| || ||||| |||| |||||||||||
Sbjct 771 TAAATTGGTAAACTATAAGGGTAAATTAGGCATGATTAATC--AAGAGTATGTTGATGAT 828
Query 1500 GGTACAAGTTTTAGGCATACCCTTGAGTTTCGTATGTGGGTTCTGGAGCATGTTGAGAAA 1559
||| ||||| | |||| |||| || |||||||||| ||| |||| | ||||
Sbjct 829 GGTG---GTTTT---C---CCCTAAAGTTAAGTGTGTGGGTTCTAGAGGATGTCG-GAAA 878
Query 1560 ATG--GAATGGTCGGA-ATATGTCTACACTTTGTTGGAT-AGTAATGAAG 1605
| | ||||||||| | |||||||||||||||| |||| | |||| |||
Sbjct 879 A-GAAGAATGGTCG-ACATATGTCTACACTTTGAGGGATGA-TAATAAAG 925
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 102 bits (55), Expect = 1e-20
Identities = 239/324 (74%), Gaps = 27/324 (8%)
Strand=Plus/Plus
Query 1444 AATTGATAAACTATAAGGGTAAATTAGGTGTGGTTAATTTGAAGAATG-TTGATGATGGT 1502
||||||||||||||||||||||||||||| ||||| ||||| |||| | || |||||| |
Sbjct 750 AATTGATAAACTATAAGGGTAAATTAGGTTTGGTTGATTTGGAGAAGGATT-ATGATGCT 808
Query 1503 ACAAGTTTTAGGCATACCCTTGAGTTTCGTATGTGGGTTCTGGAGCATGTTGAGAAAATG 1562
| | | | | || ||| ||| |||||| |||||| ||| |||| |||||| |
Sbjct 809 GGA--TAT----C-T-CC-TTGGGTTACGTATGCAGGTTCTAGAGGATGTCGAGAAAGGG 859
Query 1563 GAATGGTCGGAATATGTCTACACTTTGTTGGATAGTAATGAAGCAGCTGATGATCTTGTT 1622
|||| | | |||||| ||||||| || || | | | ||| | | | | | |||| |
Sbjct 860 GAATAGAAGAAATATGCCTACACTGTGAGGGCT-G-A-TGA-GAA--TAAAG-TCTT-TA 911
Query 1623 GTTG-A-TCTTGTT-GTTGTCGGGATGACTGCTACTGGTGATATTATTTTGTCGAAGA-T 1678
| |||| | ||||| ||| |||||| | ||||| ||| ||||| |||||| |
Sbjct 912 ACAACAATCTT-TCCGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAAGAAT 970
Query 1679 AGATACATGTGAA-CCGATTTATGtttttttCTTCAATCCCGAAAGGAAAACTTTCCAAA 1737
|| ||| ||| ||| |||||||||| | || |||||||| ||||| ||| ||| ||
Sbjct 971 T-ATGCATA-GAAACCGTTTTATGTTTTCTAATTTAATCCCGATAGGAACACTCTCCGAA 1028
Query 1738 GTGTTGAAATCCAAGGTTTTGGAG 1761
||||||||||||||||| || |||
Sbjct 1029 GTGTTGAAATCCAAGGTGTTAGAG 1052
> AT1G47300.1 | Symbols: | F-box family protein | chr1:17339561-17340972
REVERSE LENGTH=921
Length=921
Score = 95.3 bits (51), Expect = 2e-18
Identities = 103/127 (81%), Gaps = 8/127 (6%)
Strand=Plus/Plus
Query 182 AGTGCGTGTGATATGTAACCCTATCACGGGAAAGTATACGGT-CTTACCTAAACTGAGAA 240
|||||||||||||||||||||||| ||||| |||| | | ||||||| | |||| ||
Sbjct 384 AGTGCGTGTGATATGTAACCCTATAACGGGCCGGTATGC-ATCCTTACCTTATCTGAAAA 442
Query 241 GGTAC-GTAAA-GTCGTATAG-TTATTTAGTGTTTGATCCAATTGACAAGCAATTCAAGG 297
||||| | ||| | || || || ||| | |||||||||||||||||||||||||||||
Sbjct 443 GGTACAG-AAAGGAATTA-AGCTT-TTTCGGGTTTGATCCAATTGACAAGCAATTCAAGG 499
Query 298 TATTGTT 304
|| |||
Sbjct 500 AATGGTT 506
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 86.1 bits (46), Expect = 1e-15
Identities = 84/101 (83%), Gaps = 7/101 (7%)
Strand=Plus/Plus
Query 1312 GGATATGCATCAATGGGGTTTTGTATTACAAAGCTCACCAG-TTTGATGGAAG-GTC--- 1366
||||||||||||||||||||||||||| | |||| | || ||| | || |||
Sbjct 599 GGATATGCATCAATGGGGTTTTGTATTTCTTAGCTGA-GAGAAATGA-GCTAGAGTCTGA 656
Query 1367 TTATGTAATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCA 1407
|||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 TTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCA 697
> AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-11095649
FORWARD LENGTH=936
Length=936
Score = 78.7 bits (42), Expect = 2e-13
Identities = 90/113 (80%), Gaps = 4/113 (4%)
Strand=Plus/Plus
Query 119 TAGCTATGCTTCTGGTTTGGC-CTATCTCTCTGATATGA-GAATATCAGTGAAGGATGAG 176
|||||||||||||||||| || ||| || || |||| | | || ||| | ||||
Sbjct 318 TAGCTATGCTTCTGGTTT-GCTATATTTCCCTAATAT-ACGTATCTCAAACCATAATGAC 375
Query 177 GATGTAGTGCGTGTGATATGTAACCCTATCACGGGAAAGTATACGGTCTTACC 229
|||||||||||||||||||||||||||| ||| || ||||| || |||||||
Sbjct 376 GATGTAGTGCGTGTGATATGTAACCCTAGCACAAGACAGTATGCGATCTTACC 428
> AT1G33010.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11959287-11960591 FORWARD LENGTH=1086
Length=1086
Score = 62.1 bits (33), Expect = 2e-08
Identities = 44/49 (90%), Gaps = 2/49 (4%)
Strand=Plus/Plus
Query 1443 CAATTGATAAACTATAAGGGTAAATTAGGTGTGG-TTAATTTGAAGAAT 1490
||||||||||||||||||||||||||||||| || ||| || ||| |||
Sbjct 538 CAATTGATAAACTATAAGGGTAAATTAGGTG-GGATTAGTTGGAATAAT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99146076375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5