BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922183
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 869 0.0
AT1G30940.1 | Symbols: | pseudogene, F-box protein -related, c... 821 0.0
AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-... 662 0.0
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 869 bits (470), Expect = 0.0
Identities = 729/851 (86%), Gaps = 30/851 (4%)
Strand=Plus/Plus
Query 1 GTTTGATCTATTTTCATAATATGCGCATCCCAAAGGAAGATGAAGATGCAAAGCGTGTGT 60
|||||||||||||| | || ||| |||||||||||||||||| ||||||||||||||||
Sbjct 320 GTTTGATCTATTTTTAAAAAATGTTCATCCCAAAGGAAGATGAGGATGCAAAGCGTGTGT 379
Query 61 TATGTGACCCTCTCACAGGACAATATGTTATCTTACCTGAACTTAGAGGTCACTCGT-AT 119
| |||||||||||||| || || ||||| |||||||||||||||||| || | || |
Sbjct 380 TGTGTGACCCTCTCACTGGCCAGTATGTGATCTTACCTGAACTTAGA-GT-A--GGTGGT 435
Query 120 TCGTATAACTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTTTTGTTCATGAAT 179
||||||| |||||||||||||||||| || || |||||||||||||| ||||||||| ||
Sbjct 436 TCGTATAGCTATTTAGGGTTTGATCCGATTGATAAGGAATTCAAGGTATTGTTCATGGAT 495
Query 180 ACTAGTGATTTTATAGCGTCTAAGGATGTAGATCATCATATTTTGACACTAGGAGCTGGA 239
||| ||||||||||||| || ||||||| ||||||| ||||||||||| | ||| |||||
Sbjct 496 ACTTGTGATTTTATAGCTTCGAAGGATGAAGATCATTATATTTTGACATTGGGAACTGGA 555
Query 240 GAATTGAAATGGAGGAAGATCCGATGTCCTTTTACCCATGAGCCTGGGTGGAATAGGATT 299
|||||||| ||||||||||||| |||||||||||| ||||||||| ||| | |||||
Sbjct 556 GAATTGAAGTGGAGGAAGATCCAATGTCCTTTTACACATGAGCCTTTTTGGGAGAGGATA 615
Query 300 TGCATCAATGGGGTTTTGTATTACT-TAGC-T-CTA--C--ATTCTGATGG-AGGTCCTT 351
||||| ||||||||||||||||||| | || | ||| | ||||| |||| |||| ||
Sbjct 616 TGCATTAATGGGGTTTTGTATTACTCT-GCTTACTATTCTGATTCTAATGGAAGGT-CTC 673
Query 352 ATGTGATAGTTTGCTTTGATGTTAGTTCTGAGAAATTCAAGTTCATAGGCGCA-AAAGAC 410
|| | |||| ||||||||||||||| |||||||||||||| |||||| || || ||| ||
Sbjct 674 ATCTCATAGCTTGCTTTGATGTTAGGTCTGAGAAATTCAATTTCATA-GC-CACAAA-AC 730
Query 411 TTC--CATGATCAGTTGATTAACTATAAGGGAAAATTATGTGGGGTTAATGTGGAGCATG 468
|| | ||||||||||| ||||||||||| |||||||||||| ||||| ||||| |||
Sbjct 731 ATCGGTACGATCAGTTGATAAACTATAAGGGGAAATTATGTGGGATTAATTTGGAGTATG 790
Query 469 ATA---ATGGTGGTGGATTTCCCGTTAAGTTGTGTATGTGGGTTCTAGAAGATGTCCAGA 525
|| ||| |||||||||||| ||||||||| ||||||||||| |||| |||||| |||
Sbjct 791 CTAGGCATGTTGGTGGATTTCCTGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGA 850
Query 526 AACCTGAATGGTCCAAATATGTCTACACTTTGAGGGCTGATAATAAAGTCGTTAATGTTA 585
|||| |||||||| ||| |||||||| ||||| || | || | | |||||||||| ||||
Sbjct 851 AACCGGAATGGTCGAAACATGTCTACTCTTTGTGGACGGAGAGTGAAGTCGTTAAGGTTA 910
Query 586 ACTC-TAATATTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCG-TTGAA 643
|| | ||| |||||||||||||||||||||| ||||||||||||||||| ||| | |||
Sbjct 911 AC-CGGAATCTTTCTGTTTCTGGGATGACTGCAACCGGTGACATTGTTTTATCGATGGAA 969
Query 644 TATGGCATCCAATCTGTATTATGTTTTCTACTTCAATCCGGAAT-GGAACACTCTCCAAG 702
|| ||| | |||| || |||||||||| |||||||||||| || |||||||||||||||
Sbjct 970 GAT-GCAACTAATCCGTTTTATGTTTTCAACTTCAATCCGG-ATAGGAACACTCTCCAAG 1027
Query 703 TCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCGCATAGCTTACTACGCCT 762
|||||||||||||||||||||||||||||||||||||||||| |||||||| | | ||||
Sbjct 1028 TCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCACATAGCTTGCCATGCCT 1087
Query 763 TTGTAGACTATGTAGAGGATCTTAGTGTTAACGATGCACTGCTGCCATTCAAGTCAAGCC 822
|||| ||||||||||| ||| ||||||||| ||||||| |||||| | ||||||||||||
Sbjct 1088 TTGTTGACTATGTAGAAGATTTTAGTGTTAGCGATGCAGTGCTGCAACTCAAGTCAAGCC 1147
Query 823 CTTTACAACAA 833
|||||||||||
Sbjct 1148 CTTTACAACAA 1158
> AT1G30940.1 | Symbols: | pseudogene, F-box protein -related,
contains TIGRfam:TIGR01640 F-box protein interaction domain
| chr1:11021984-11023320 REVERSE LENGTH=1337
Length=1337
Score = 821 bits (444), Expect = 0.0
Identities = 788/947 (83%), Gaps = 52/947 (5%)
Strand=Plus/Plus
Query 1 GTTTGATCTATTTTCATAATATGCGCATCCCAAAGGAAGATGAAGATGCAAAGCGTGTGT 60
||||||| |||||| || |||| |||||| |||||| ||||| |||||||||| ||| |
Sbjct 308 GTTTGATTTATTTTGATGGTATGTGCATCCGAAAGGAGGATGAGGATGCAAAGCATGTTT 367
Query 61 TATGTGACCCTCTCACAGGACAA-TATGTTATCTTACCTGAACTTAGAGGTCACTCGT-A 118
|||||||||||||||||||| || ||||| |||||||||||||||||| || | || |
Sbjct 368 TATGTGACCCTCTCACAGGA-AAGTATGTGATCTTACCTGAACTTAGA-GT-A--GGTGA 422
Query 119 TTCGTATAACTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTTTTGTTCATGAA 178
|||||||| ||||||||||||||||||| | || |||||||||||||| ||||||||||
Sbjct 423 TTCGTATAGCTATTTAGGGTTTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGAC 482
Query 179 TACTAGTGATTTTATAGCGTCTAAGGATGTAGATCATCATATTTTGACACTAGGAGCTGG 238
|||| || || |||||| | |||||| |||||||| ||||| ||||| | ||| ||||
Sbjct 483 TACTCGTAATAATATAGCTTGGAAGGATCTAGATCATTATATTCTGACATTGGGAACTGG 542
Query 239 AGAATTGAAATGGAGGAAGATCCGATGTCCTTTTACCCATGAGCCTGGGT-GGAATAGGA 297
|||||||||||||||| |||||||||| |||||||||||||||||| || |||| ||||
Sbjct 543 GGAATTGAAATGGAGGAGGATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGAA-AGGA 601
Query 298 TTTGCATCAATGGGGTTTTGTATTACTTAGCTCT-ACATTCTGATGGAGGTCCTTATGTG 356
|||| |||||||| ||||||||||||| |||| | | ||||||||||| |||||||
Sbjct 602 TTTGTATCAATGGAGTTTTGTATTACTCAGCTATGA-ATTCTGATGGA---AATTATGTG 657
Query 357 ATAGTTTGCTTTGATGTTAGTTCTGAGAAATTCAAGTTCATAGGCGCA-AAAGAC-TTCC 414
|||||||| |||||||||| | |||||| || | | |||| || | | |||
Sbjct 658 ATAGTTTGTTTTGATGTTA----T------TTCAAGCTCGTTGACGCAGAATGCCGTTCT 707
Query 415 ATGA--TCA--G-TTGATTAACTATAAGGGAAAATTATGTGGGGTTAATGTGGAGCATG- 468
| || | | | ||||| ||||||||||| |||||||||||| ||| | ||||| |||
Sbjct 708 A-GATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTGGAGTATGC 766
Query 469 -A-TAATGGTGGTGGATTTCCCGTTAAGTTGTGTATGTGGGTTCTAGAAGATGTCCAGAA 526
| | ||| |||||||| | ||||||||||| ||||||||||| |||| |||||| ||||
Sbjct 767 TAGTCATGATGGTGGATCTACCGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAA 826
Query 527 ACCTGAATGGTCCAAATATGTCTACACTTTGAGGGCTGATAATAAAGTCGTTAATGTTAA 586
||| |||||||| ||| |||||||| | ||| || | || | | |||||||||| |||||
Sbjct 827 ACCGGAATGGTCGAAACATGTCTACTCGTTGTGGACGGAGAGTCAAGTCGTTAAGGTTAA 886
Query 587 CTC-TAATATTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGTTGAA-T 644
| | |||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 887 C-CATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGACAAAAT 945
Query 645 ATGGCATC-CAATCTGTATTATGTTTTCTACTTCAATCCGGAATGGAACACTCTCCAAGT 703
||| |||| || | || ||||||||||||||||||||| ||| |||| ||||| |||||
Sbjct 946 ATG-CATCTCAGCC-GTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCTGCAAGT 1003
Query 704 CCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCGCATAG-CTTACTACGCCT 762
|| |||||||||| || | ||||||||||||||||||| | |||| | |||| |||||||
Sbjct 1004 CCCAAGTGTTGAAGTCGAGGGTCTTGGAGCTAATCGTGCTTGCAT-GTCTTATTACGCCT 1062
Query 763 TTG-TAGACTATGTAGAGGATCTTAGTGTTAACGATGCACTGCTGCCAT-TCAAGTCAAG 820
||| | ||||||||||||||||||||||||||||||||| ||| | || ||||||||||
Sbjct 1063 TTGCT-GACTATGTAGAGGATCTTAGTGTTAACGATGCAGTGC-GACAACTCAAGTCAAG 1120
Query 821 CCCTTTACAACAA---GGC-AAAGATATAGTTACCAAGAGGCTAAAACCACGACAACTCC 876
||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||| ||
Sbjct 1121 CCCTTTACAACAACAAGGCCAAA-ATATCGTTACCAAGAGGCCAAAACCACGACAAGGCC 1179
Query 877 GCTATACATCTCGTGACCTTTCCAAGTCTGCTCCATCTGTGAAGAAC 923
||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1180 AAGATACATCTCATGACCTCTCCAAGTCTGCTCCGTCTGTGAAGAAC 1226
Score = 80.5 bits (43), Expect = 3e-14
Identities = 54/59 (92%), Gaps = 2/59 (3%)
Strand=Plus/Plus
Query 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGT-AACTTAAGTCAAGCCCTTTACA 1129
||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||
Sbjct 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAGTGC-GACAACTCAAGTCAAGCCCTTTACA 1129
> AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-11015913
REVERSE LENGTH=1131
Length=1131
Score = 662 bits (358), Expect = 0.0
Identities = 699/853 (82%), Gaps = 65/853 (8%)
Strand=Plus/Plus
Query 1 GTTTGATCTATTTTCATAA--TATGCGCATCCCAAAGGAAGATGAAGATGCAAAGCGTGT 58
||||||| |||||| | || |||||| ||||||||||| |||||||||| ||||| |||
Sbjct 320 GTTTGATTTATTTT-A-AATGTATGCGTATCCCAAAGGAGGATGAAGATGAAAAGCCTGT 377
Query 59 GTTATGTGACCCTCTCACAGGACAA-TATGTTATCTTACCTGAACTTAGAGGTCA-CTCG 116
||| ||||| |||||||||||| || ||||||||||||||||||| |||| || | | |
Sbjct 378 GTTGTGTGATCCTCTCACAGGA-AAGTATGTTATCTTACCTGAACCTAGA-GT-ATTTGG 434
Query 117 TATTCGTATAACTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTTTTGTTCATG 176
|| | ||||| ||||||||||||||||||| | || |||||||||||||| |||||||||
Sbjct 435 TA-T-GTATAGCTATTTAGGGTTTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATG 492
Query 177 AATACTAGTGATTTTATAGCGTCTAAGGATGTAGATCATCATATTTTGACACTAG-GAGC 235
| || | | || || ||| || ||||||||||||||| ||||| ||||| | | || |
Sbjct 493 GCTTCT-G-G-TTATACAGCTTCCAAGGATGTAGATCATTATATTCTGACA-TTGAGAAC 548
Query 236 TGGAGAATTGAAATGGAGGA-AGATCCGATGTCCTTTTACCCATGAGCCTGGGTGGA-AT 293
||| |||||||||||||||| | |||| |||||||||||||||||||||| ||||| |
Sbjct 549 TGGGGAATTGAAATGGAGGACA-ATCCAATGTCCTTTTACCCATGAGCCTTTGTGGACA- 606
Query 294 AGGATTTGCATCAATGGGGTTTTGTATTACTTAGCTCT-ACATTCTGATGGAGGTCCTTA 352
|||||||| |||||||| ||||||||||||| |||| | | ||||||||||| |||
Sbjct 607 AGGATTTGTATCAATGGAGTTTTGTATTACTCAGCTATGA-ATTCTGATGGA---AATTA 662
Query 353 TGTGATAGTTTGCTTTGATGTTAGTTCTGAGAAATTCAAGTTCATAGGCGCAAAA-GAC- 410
|||||||||||| ||||||||||| | ||||||||| ||| || | | | ||||| | |
Sbjct 663 TGTGATAGTTTGTTTTGATGTTAGATATGAGAAATTTAAGCTCGTTGACACAAAATGTCG 722
Query 411 TTCCATG-A--TCA--G-TTGATTAACTATAAGGGAAAATTATGTGGGGTTAATG-TGGA 463
|| | || | | | | ||||| ||||||||||| ||||||||||||||||| | || |
Sbjct 723 TT-C-TGAATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGGTTAA-GTTGAA 779
Query 464 GCATGATAATGGTGGTGGATTTCCCGTTAAGTTGTGTATGTGGGTTCTAGAAGATGTCCA 523
| ||| | || ||| |||||||||||||||||| ||||| | |||||||| ||||| |
Sbjct 780 GTATGCTTATCGTGTTGGATTTCCCGTTAAGTTACGTATGCGAGTTCTAGAGGATGTTGA 839
Query 524 GAAACCTGAATGGTCCAAATATGTCTACACTTTGAGGGCTGATAATAAAGTCGTTAATGT 583
|||| ||||||||| | |||||| | | | | | | | ||| ||||| |
Sbjct 840 GAAAGATGAATGGTCGACATATGT-T--A-----A--G--G-T--T-AAG--GTTAA-G- 879
Query 584 TAACTCTAATATTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGT-CGTTGA 642
| ||| |||| ||| ||||||||||||||||||||||||||||||||| | | ||
Sbjct 880 ---C-AGAATCTTTCCGTTGCTGGGATGACTGCTACCGGTGACATTGTTTTGTTCAT-GA 934
Query 643 A-TATGGCATCCAATCTGTATTATGTTTTCTACTTCAATCCGGAATGGAACACTCTCCAA 701
| | || | || |||| || ||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 935 AATTTG-CGTCTAATCCGTTTTATGTTTTCTACTTCAATCCGGAAAGGAACTCTCTCGAA 993
Query 702 GTCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCGCATAGCTTACTACGCC 761
||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 994 GTCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCCTGATCGCATAGCTTGCAACGCC 1053
Query 762 TTTGTAGACTATGTAGAGGATCTTAGTGTTAACGATGCACTGCTGCCATTCAAGTCAAGC 821
|||||||| |||||||||||||||||||||||||||||| |||||| | |||| |||| |
Sbjct 1054 TTTGTAGATTATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGCAACTCAACTCAATC 1113
Query 822 CCTTTACAACAAG 834
|||||||||||||
Sbjct 1114 CCTTTACAACAAG 1126
Score = 86.1 bits (46), Expect = 7e-16
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGTAACTTAAGTCAAGCCCTTTACA 1129
||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||
Sbjct 1064 ATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGCAACTCAACTCAATCCCTTTACA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5