BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922183 Length=1129 Score E Sequences producing significant alignments: (Bits) Value AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 869 0.0 AT1G30940.1 | Symbols: | pseudogene, F-box protein -related, c... 821 0.0 AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-... 662 0.0 > AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE LENGTH=1555 Length=1555 Score = 869 bits (470), Expect = 0.0 Identities = 729/851 (86%), Gaps = 30/851 (4%) Strand=Plus/Plus Query 1 GTTTGATCTATTTTCATAATATGCGCATCCCAAAGGAAGATGAAGATGCAAAGCGTGTGT 60 |||||||||||||| | || ||| |||||||||||||||||| |||||||||||||||| Sbjct 320 GTTTGATCTATTTTTAAAAAATGTTCATCCCAAAGGAAGATGAGGATGCAAAGCGTGTGT 379 Query 61 TATGTGACCCTCTCACAGGACAATATGTTATCTTACCTGAACTTAGAGGTCACTCGT-AT 119 | |||||||||||||| || || ||||| |||||||||||||||||| || | || | Sbjct 380 TGTGTGACCCTCTCACTGGCCAGTATGTGATCTTACCTGAACTTAGA-GT-A--GGTGGT 435 Query 120 TCGTATAACTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTTTTGTTCATGAAT 179 ||||||| |||||||||||||||||| || || |||||||||||||| ||||||||| || Sbjct 436 TCGTATAGCTATTTAGGGTTTGATCCGATTGATAAGGAATTCAAGGTATTGTTCATGGAT 495 Query 180 ACTAGTGATTTTATAGCGTCTAAGGATGTAGATCATCATATTTTGACACTAGGAGCTGGA 239 ||| ||||||||||||| || ||||||| ||||||| ||||||||||| | ||| ||||| Sbjct 496 ACTTGTGATTTTATAGCTTCGAAGGATGAAGATCATTATATTTTGACATTGGGAACTGGA 555 Query 240 GAATTGAAATGGAGGAAGATCCGATGTCCTTTTACCCATGAGCCTGGGTGGAATAGGATT 299 |||||||| ||||||||||||| |||||||||||| ||||||||| ||| | ||||| Sbjct 556 GAATTGAAGTGGAGGAAGATCCAATGTCCTTTTACACATGAGCCTTTTTGGGAGAGGATA 615 Query 300 TGCATCAATGGGGTTTTGTATTACT-TAGC-T-CTA--C--ATTCTGATGG-AGGTCCTT 351 ||||| ||||||||||||||||||| | || | ||| | ||||| |||| |||| || Sbjct 616 TGCATTAATGGGGTTTTGTATTACTCT-GCTTACTATTCTGATTCTAATGGAAGGT-CTC 673 Query 352 ATGTGATAGTTTGCTTTGATGTTAGTTCTGAGAAATTCAAGTTCATAGGCGCA-AAAGAC 410 || | |||| ||||||||||||||| |||||||||||||| |||||| || || ||| || Sbjct 674 ATCTCATAGCTTGCTTTGATGTTAGGTCTGAGAAATTCAATTTCATA-GC-CACAAA-AC 730 Query 411 TTC--CATGATCAGTTGATTAACTATAAGGGAAAATTATGTGGGGTTAATGTGGAGCATG 468 || | ||||||||||| ||||||||||| |||||||||||| ||||| ||||| ||| Sbjct 731 ATCGGTACGATCAGTTGATAAACTATAAGGGGAAATTATGTGGGATTAATTTGGAGTATG 790 Query 469 ATA---ATGGTGGTGGATTTCCCGTTAAGTTGTGTATGTGGGTTCTAGAAGATGTCCAGA 525 || ||| |||||||||||| ||||||||| ||||||||||| |||| |||||| ||| Sbjct 791 CTAGGCATGTTGGTGGATTTCCTGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGA 850 Query 526 AACCTGAATGGTCCAAATATGTCTACACTTTGAGGGCTGATAATAAAGTCGTTAATGTTA 585 |||| |||||||| ||| |||||||| ||||| || | || | | |||||||||| |||| Sbjct 851 AACCGGAATGGTCGAAACATGTCTACTCTTTGTGGACGGAGAGTGAAGTCGTTAAGGTTA 910 Query 586 ACTC-TAATATTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCG-TTGAA 643 || | ||| |||||||||||||||||||||| ||||||||||||||||| ||| | ||| Sbjct 911 AC-CGGAATCTTTCTGTTTCTGGGATGACTGCAACCGGTGACATTGTTTTATCGATGGAA 969 Query 644 TATGGCATCCAATCTGTATTATGTTTTCTACTTCAATCCGGAAT-GGAACACTCTCCAAG 702 || ||| | |||| || |||||||||| |||||||||||| || ||||||||||||||| Sbjct 970 GAT-GCAACTAATCCGTTTTATGTTTTCAACTTCAATCCGG-ATAGGAACACTCTCCAAG 1027 Query 703 TCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCGCATAGCTTACTACGCCT 762 |||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||| Sbjct 1028 TCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCACATAGCTTGCCATGCCT 1087 Query 763 TTGTAGACTATGTAGAGGATCTTAGTGTTAACGATGCACTGCTGCCATTCAAGTCAAGCC 822 |||| ||||||||||| ||| ||||||||| ||||||| |||||| | |||||||||||| Sbjct 1088 TTGTTGACTATGTAGAAGATTTTAGTGTTAGCGATGCAGTGCTGCAACTCAAGTCAAGCC 1147 Query 823 CTTTACAACAA 833 ||||||||||| Sbjct 1148 CTTTACAACAA 1158 > AT1G30940.1 | Symbols: | pseudogene, F-box protein -related, contains TIGRfam:TIGR01640 F-box protein interaction domain | chr1:11021984-11023320 REVERSE LENGTH=1337 Length=1337 Score = 821 bits (444), Expect = 0.0 Identities = 788/947 (83%), Gaps = 52/947 (5%) Strand=Plus/Plus Query 1 GTTTGATCTATTTTCATAATATGCGCATCCCAAAGGAAGATGAAGATGCAAAGCGTGTGT 60 ||||||| |||||| || |||| |||||| |||||| ||||| |||||||||| ||| | Sbjct 308 GTTTGATTTATTTTGATGGTATGTGCATCCGAAAGGAGGATGAGGATGCAAAGCATGTTT 367 Query 61 TATGTGACCCTCTCACAGGACAA-TATGTTATCTTACCTGAACTTAGAGGTCACTCGT-A 118 |||||||||||||||||||| || ||||| |||||||||||||||||| || | || | Sbjct 368 TATGTGACCCTCTCACAGGA-AAGTATGTGATCTTACCTGAACTTAGA-GT-A--GGTGA 422 Query 119 TTCGTATAACTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTTTTGTTCATGAA 178 |||||||| ||||||||||||||||||| | || |||||||||||||| |||||||||| Sbjct 423 TTCGTATAGCTATTTAGGGTTTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGAC 482 Query 179 TACTAGTGATTTTATAGCGTCTAAGGATGTAGATCATCATATTTTGACACTAGGAGCTGG 238 |||| || || |||||| | |||||| |||||||| ||||| ||||| | ||| |||| Sbjct 483 TACTCGTAATAATATAGCTTGGAAGGATCTAGATCATTATATTCTGACATTGGGAACTGG 542 Query 239 AGAATTGAAATGGAGGAAGATCCGATGTCCTTTTACCCATGAGCCTGGGT-GGAATAGGA 297 |||||||||||||||| |||||||||| |||||||||||||||||| || |||| |||| Sbjct 543 GGAATTGAAATGGAGGAGGATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGAA-AGGA 601 Query 298 TTTGCATCAATGGGGTTTTGTATTACTTAGCTCT-ACATTCTGATGGAGGTCCTTATGTG 356 |||| |||||||| ||||||||||||| |||| | | ||||||||||| ||||||| Sbjct 602 TTTGTATCAATGGAGTTTTGTATTACTCAGCTATGA-ATTCTGATGGA---AATTATGTG 657 Query 357 ATAGTTTGCTTTGATGTTAGTTCTGAGAAATTCAAGTTCATAGGCGCA-AAAGAC-TTCC 414 |||||||| |||||||||| | |||||| || | | |||| || | | ||| Sbjct 658 ATAGTTTGTTTTGATGTTA----T------TTCAAGCTCGTTGACGCAGAATGCCGTTCT 707 Query 415 ATGA--TCA--G-TTGATTAACTATAAGGGAAAATTATGTGGGGTTAATGTGGAGCATG- 468 | || | | | ||||| ||||||||||| |||||||||||| ||| | ||||| ||| Sbjct 708 A-GATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTGGAGTATGC 766 Query 469 -A-TAATGGTGGTGGATTTCCCGTTAAGTTGTGTATGTGGGTTCTAGAAGATGTCCAGAA 526 | | ||| |||||||| | ||||||||||| ||||||||||| |||| |||||| |||| Sbjct 767 TAGTCATGATGGTGGATCTACCGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAA 826 Query 527 ACCTGAATGGTCCAAATATGTCTACACTTTGAGGGCTGATAATAAAGTCGTTAATGTTAA 586 ||| |||||||| ||| |||||||| | ||| || | || | | |||||||||| ||||| Sbjct 827 ACCGGAATGGTCGAAACATGTCTACTCGTTGTGGACGGAGAGTCAAGTCGTTAAGGTTAA 886 Query 587 CTC-TAATATTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGTTGAA-T 644 | | |||| |||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 887 C-CATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGTCGACAAAAT 945 Query 645 ATGGCATC-CAATCTGTATTATGTTTTCTACTTCAATCCGGAATGGAACACTCTCCAAGT 703 ||| |||| || | || ||||||||||||||||||||| ||| |||| ||||| ||||| Sbjct 946 ATG-CATCTCAGCC-GTTTTATGTTTTCTACTTCAATCCAGAAAGGAAAACTCTGCAAGT 1003 Query 704 CCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCGCATAG-CTTACTACGCCT 762 || |||||||||| || | ||||||||||||||||||| | |||| | |||| ||||||| Sbjct 1004 CCCAAGTGTTGAAGTCGAGGGTCTTGGAGCTAATCGTGCTTGCAT-GTCTTATTACGCCT 1062 Query 763 TTG-TAGACTATGTAGAGGATCTTAGTGTTAACGATGCACTGCTGCCAT-TCAAGTCAAG 820 ||| | ||||||||||||||||||||||||||||||||| ||| | || |||||||||| Sbjct 1063 TTGCT-GACTATGTAGAGGATCTTAGTGTTAACGATGCAGTGC-GACAACTCAAGTCAAG 1120 Query 821 CCCTTTACAACAA---GGC-AAAGATATAGTTACCAAGAGGCTAAAACCACGACAACTCC 876 ||||||||||||| ||| ||| |||| ||||||||||||| ||||||||||||| || Sbjct 1121 CCCTTTACAACAACAAGGCCAAA-ATATCGTTACCAAGAGGCCAAAACCACGACAAGGCC 1179 Query 877 GCTATACATCTCGTGACCTTTCCAAGTCTGCTCCATCTGTGAAGAAC 923 ||||||||| |||||| |||||||||||||| |||||||||||| Sbjct 1180 AAGATACATCTCATGACCTCTCCAAGTCTGCTCCGTCTGTGAAGAAC 1226 Score = 80.5 bits (43), Expect = 3e-14 Identities = 54/59 (92%), Gaps = 2/59 (3%) Strand=Plus/Plus Query 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGT-AACTTAAGTCAAGCCCTTTACA 1129 ||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||| Sbjct 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAGTGC-GACAACTCAAGTCAAGCCCTTTACA 1129 > AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-11015913 REVERSE LENGTH=1131 Length=1131 Score = 662 bits (358), Expect = 0.0 Identities = 699/853 (82%), Gaps = 65/853 (8%) Strand=Plus/Plus Query 1 GTTTGATCTATTTTCATAA--TATGCGCATCCCAAAGGAAGATGAAGATGCAAAGCGTGT 58 ||||||| |||||| | || |||||| ||||||||||| |||||||||| ||||| ||| Sbjct 320 GTTTGATTTATTTT-A-AATGTATGCGTATCCCAAAGGAGGATGAAGATGAAAAGCCTGT 377 Query 59 GTTATGTGACCCTCTCACAGGACAA-TATGTTATCTTACCTGAACTTAGAGGTCA-CTCG 116 ||| ||||| |||||||||||| || ||||||||||||||||||| |||| || | | | Sbjct 378 GTTGTGTGATCCTCTCACAGGA-AAGTATGTTATCTTACCTGAACCTAGA-GT-ATTTGG 434 Query 117 TATTCGTATAACTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTTTTGTTCATG 176 || | ||||| ||||||||||||||||||| | || |||||||||||||| ||||||||| Sbjct 435 TA-T-GTATAGCTATTTAGGGTTTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATG 492 Query 177 AATACTAGTGATTTTATAGCGTCTAAGGATGTAGATCATCATATTTTGACACTAG-GAGC 235 | || | | || || ||| || ||||||||||||||| ||||| ||||| | | || | Sbjct 493 GCTTCT-G-G-TTATACAGCTTCCAAGGATGTAGATCATTATATTCTGACA-TTGAGAAC 548 Query 236 TGGAGAATTGAAATGGAGGA-AGATCCGATGTCCTTTTACCCATGAGCCTGGGTGGA-AT 293 ||| |||||||||||||||| | |||| |||||||||||||||||||||| ||||| | Sbjct 549 TGGGGAATTGAAATGGAGGACA-ATCCAATGTCCTTTTACCCATGAGCCTTTGTGGACA- 606 Query 294 AGGATTTGCATCAATGGGGTTTTGTATTACTTAGCTCT-ACATTCTGATGGAGGTCCTTA 352 |||||||| |||||||| ||||||||||||| |||| | | ||||||||||| ||| Sbjct 607 AGGATTTGTATCAATGGAGTTTTGTATTACTCAGCTATGA-ATTCTGATGGA---AATTA 662 Query 353 TGTGATAGTTTGCTTTGATGTTAGTTCTGAGAAATTCAAGTTCATAGGCGCAAAA-GAC- 410 |||||||||||| ||||||||||| | ||||||||| ||| || | | | ||||| | | Sbjct 663 TGTGATAGTTTGTTTTGATGTTAGATATGAGAAATTTAAGCTCGTTGACACAAAATGTCG 722 Query 411 TTCCATG-A--TCA--G-TTGATTAACTATAAGGGAAAATTATGTGGGGTTAATG-TGGA 463 || | || | | | | ||||| ||||||||||| ||||||||||||||||| | || | Sbjct 723 TT-C-TGAATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGGTTAA-GTTGAA 779 Query 464 GCATGATAATGGTGGTGGATTTCCCGTTAAGTTGTGTATGTGGGTTCTAGAAGATGTCCA 523 | ||| | || ||| |||||||||||||||||| ||||| | |||||||| ||||| | Sbjct 780 GTATGCTTATCGTGTTGGATTTCCCGTTAAGTTACGTATGCGAGTTCTAGAGGATGTTGA 839 Query 524 GAAACCTGAATGGTCCAAATATGTCTACACTTTGAGGGCTGATAATAAAGTCGTTAATGT 583 |||| ||||||||| | |||||| | | | | | | | ||| ||||| | Sbjct 840 GAAAGATGAATGGTCGACATATGT-T--A-----A--G--G-T--T-AAG--GTTAA-G- 879 Query 584 TAACTCTAATATTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTGT-CGTTGA 642 | ||| |||| ||| ||||||||||||||||||||||||||||||||| | | || Sbjct 880 ---C-AGAATCTTTCCGTTGCTGGGATGACTGCTACCGGTGACATTGTTTTGTTCAT-GA 934 Query 643 A-TATGGCATCCAATCTGTATTATGTTTTCTACTTCAATCCGGAATGGAACACTCTCCAA 701 | | || | || |||| || ||||||||||||||||||||||||| ||||| ||||| || Sbjct 935 AATTTG-CGTCTAATCCGTTTTATGTTTTCTACTTCAATCCGGAAAGGAACTCTCTCGAA 993 Query 702 GTCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCGTGATCGCATAGCTTACTACGCC 761 ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| Sbjct 994 GTCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAATCCTGATCGCATAGCTTGCAACGCC 1053 Query 762 TTTGTAGACTATGTAGAGGATCTTAGTGTTAACGATGCACTGCTGCCATTCAAGTCAAGC 821 |||||||| |||||||||||||||||||||||||||||| |||||| | |||| |||| | Sbjct 1054 TTTGTAGATTATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGCAACTCAACTCAATC 1113 Query 822 CCTTTACAACAAG 834 ||||||||||||| Sbjct 1114 CCTTTACAACAAG 1126 Score = 86.1 bits (46), Expect = 7e-16 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 1072 ATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGTAACTTAAGTCAAGCCCTTTACA 1129 ||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||| Sbjct 1064 ATGTAGAGGATCTTAGTGTTAACGATGCAATGCTGCAACTCAACTCAATCCCTTTACA 1121 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55371201135 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5