BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922186
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 429 2e-119
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 215 6e-55
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 126 3e-28
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 86.1 5e-16
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 429 bits (232), Expect = 2e-119
Identities = 371/436 (85%), Gaps = 17/436 (4%)
Strand=Plus/Plus
Query 338 ATGAACCTTTTGGGAAAGAGATATGCATCAATGGGGTTTTGTATTACTCTG-CTAGGACA 396
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1 ATGAACCTTTTTGGAAAGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCTAGTTCA 60
Query 397 GATCATGCAAATCTTCTGATAGTTTGTTTTGATGTGAGGTCTGAGAAATTCAATTTTATT 456
| ||||| | ||||||||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 61 GCTCATGGATATCTTCTGATAGTTTCTTTTGATTTTAGGTCTGAGAAATTCAATTTTATC 120
Query 457 GATGCATCATA-CTTC-TTTTATACATATACAAAATTGATAAACTATAAAGGTAAATTAG 514
|||||||| | |||| |||| | ||| |||||||||||||||||| |||||||||||||
Sbjct 121 AATGCATCA-AGCTTCCTTTTTT-CATCTACAAAATTGATAAACTACAAAGGTAAATTAG 178
Query 515 GTGTGACTAATCTGGAGTAT------GGTGGTTTATTTTCCATTGAGTTGTGTGTTTGGG 568
||| || | || ||| |||| |||||| ||| | || ||||||| || | ||||
Sbjct 179 GTGGGATTGATTTGGCGTATAATCATGGTGGTGTATATCCCGTTGAGTTACGTATGTGGG 238
Query 569 TTCTAGAGGATGTCAAGAAACATGAATGGTCGAAACATGTCTACTCTTTAACGGAGACGG 628
|||||||||||||| ||||||| |||||||||| |||||| |||||||| |||||||
Sbjct 239 TTCTAGAGGATGTCGAGAAACACGAATGGTCGAGACATGTTTACTCTTTGCCGGAGACCA 298
Query 629 TTGTCTT---GCAGTGTGACTACAATATTTGCGTTGCTGGGATGACTGCTACAGGTGAAA 685
||| || ||||||| |||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 299 TTGAATTTCAGCAGTGTAACTACAATATTTGCGTTGGTGGGATGAATGCTATAGGTGAAA 358
Query 686 TTGTTTTGTCCCAGTACA-ATACATCTACATCGAAACCGTTTTATGTTTTCTACTTCAAT 744
||||||| || ||| || ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 359 TTGTTTTTTCGGAGT-CATATATATCTACATCCAAACCGTTTTATGTTTTCTACTTCAAT 417
Query 745 CCCGATA-GAAACACA 759
||||| | |||| |||
Sbjct 418 CCCGAAAAGAAAAACA 433
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 215 bits (116), Expect = 6e-55
Identities = 455/611 (74%), Gaps = 54/611 (9%)
Strand=Plus/Plus
Query 262 GATGAATGGGTTCATCATATTCTGACATTCGGAACTGAAAAAT-TGATGTGGTGGAAGAT 320
|||||||||||| |||||||||||||||| ||||||||||| | ||| |||| || ||||
Sbjct 304 GATGAATGGGTTTATCATATTCTGACATTAGGAACTGAAAA-TGTGAGGTGGAGGGAGAT 362
Query 321 CCA-ATGTACCTTAA-ACCATGAACCTTTT-GGGAAA-GA-GATATGCATCAATGGGGTT 375
| |||| |||| | |||| ||| | |||||| | |||||||||||||||||||
Sbjct 363 T-ATATGTCCCTTTTCAT-ATGATCCTCCTCGGGAAAAGCCGATATGCATCAATGGGGTT 420
Query 376 TTGTATTAC-TC--TGCTAGGACAGATCATGCAAATCTTCTGATAGTTTGTTTTGATGTG 432
||||||||| | || | || || | || | || || |||| ||| ||||||||
Sbjct 421 TTGTATTACATAAGTG-TCGGT-AGTT-ATT-AT-TCA-CTTATAGGTTGCTTTGATGTT 474
Query 433 AGGTCTGAGAAATTCAA-TTTT-AT-TG-ATGCATCATACTT-CTTTT-ATACA--TATA 484
||||||||||||||||| |||| || | | || || | || |||| | || | ||
Sbjct 475 AGGTCTGAGAAATTCAAGTTTTTATATCTAAGCC-CAGA-TTGCTTTCCAAACTGGTCTA 532
Query 485 CAAAATTGATAAACTATAAAGGTAAATTAGGTGTGACTA-ATCTGGA-G-T-ATGGTGGT 540
|||||||||||||||||| ||||||||||||||||||| | |||| | | || ||||
Sbjct 533 GAAAATTGATAAACTATAAGGGTAAATTAGGTGTGACTATAA-TGGAAGATTATCATGGT 591
Query 541 TTATTTTCCATTGAGTTGTGTGTTTGGGTTCTAGAGGATGTCAAGAAACATGAATGGTCG 600
|||| || || ||||| || | |||||||||||||||||| ||||| | |||||| ||
Sbjct 592 GGATTTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACG 651
Query 601 AAACATGTCTACTCTTTAACG---GAGACGGTTGTCTTGCAGTGTGACTACAATATTTGC 657
| | ||| |||| |||| | | |||| ||| | | |||||| ||| ||
Sbjct 652 AGATATGCCTACACTTTGAGGCCTGAGAATAAAGTCGAGGACAATGACTATG-TATATG- 709
Query 658 GTTGCTGGGATGACTGCTACAGGTGAAATTGTTTTGTCCCAGTACAATACATCTACATCG 717
||| |||| |||||| ||||||||||||||||| | | | ||| ||| | |
Sbjct 710 -TTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGACGAAACAGAATGCAT--A--T-- 762
Query 718 AAACCGTTTTATGTTTTCTACTTCAATCCCGATAGAAACACAATCCAAAGTGTGTTAAAA 777
||||||||||||||||||||||| | ||| || || ||||| ||| ||| || | |||
Sbjct 763 AAACCGTTTTATGTTTTCTACTTTAGTCCTGAAAGGAACACTCTCCTAAGCGT-TGAAA- 820
Query 778 TCCAAGGTTTTGGAGATTACC--TTA-ATCGTAGA-GTTTA-TGCCTTTGTAGACTATGT 832
|||||||| ||||||| | || ||| || | ||||| | | ||||||||| ||||
Sbjct 821 TCCAAGGTGTTGGAGAAGAATGGTTTTATCATA-ATGTTTACTAC-TTTGTAGACCATGT 878
Query 833 AGAGGATCTTA 843
||||||||||
Sbjct 879 CGAGGATCTTA 889
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 126 bits (68), Expect = 3e-28
Identities = 234/309 (76%), Gaps = 32/309 (10%)
Strand=Plus/Plus
Query 552 TGAGTTGTGTGTTTGGGTTCTAGAGGATGTCAAGAAACATG-AATGGTCGAAACATGTCT 610
||||||| |||| ||||||||||||||||| |||||||| | ||||||||||| ||| ||
Sbjct 1051 TGAGTTGCGTGTGTGGGTTCTAGAGGATGTTAAGAAACA-GCAATGGTCGAAATATGCCT 1109
Query 611 ACTCTTTAACGGA-GACGGTTGTCTTGCAGTGTGACTACAATATTTGCGTTGCTGGGA-T 668
|| ||| || || || | | |||| | || | | | | ||| | | ||| |||
Sbjct 1110 ACACTTGGACCGATGATAGAT-TCTT-CCGT-CG--T-C-GTGTTTCCATCGCT-GGAGG 1161
Query 669 GACTGCTACAGGTGAAAT--TGTTTT-G-T-CCCAGTACA-ATACATCTACATCGAAACC 722
||||||| | |||||||| |||||| | | | || | | ||||| ||| | | ||||
Sbjct 1162 GACTGCTTCGGGTGAAATAGTGTTTTCGATGCTCA--A-ATATACACCTA-A--GCAACC 1215
Query 723 GTTTTATGTTTTCTACTTCAATCCCGATAGAAACACAATCCAAAGTGTGTTAAAATCCAA 782
||||||||||||||||||||||||||| || ||||| ||||| |||| | ||| |||||
Sbjct 1216 GTTTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGT-TGAAA-TCCAA 1273
Query 783 GGTTTTGGAGA--T-T-ACCTTAATC--GTAGAGTTTATGCCTTTGTAGACTATGTAGAG 836
|||||||| || | | | || | ||||||||| |||||||| || | ||||||
Sbjct 1274 GGTTTTGGTGAAGTGTTAAAGAAAACTTGTAGAGTTTGCACCTTTGTAAACCACGTAGAG 1333
Query 837 GATCTTAAT 845
|||||||||
Sbjct 1334 GATCTTAAT 1342
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 86.1 bits (46), Expect = 5e-16
Identities = 187/250 (75%), Gaps = 30/250 (12%)
Strand=Plus/Plus
Query 552 TGAGTTGTGTGTTTGGGTTCTAGAGGATGTCAAGAAACATGAATGGTCGAAACATGTCTA 611
||||||| ||| ||||||||||||||||| ||||||| |||||||| ||| ||| |||
Sbjct 858 TGAGTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATATGCCTA 917
Query 612 CTCTTTAACGGA-GACGGTTGTCTTGCAGTGTGACTACAATATTTGCGTTGCTGGGATG- 669
| ||| || || || | |||| | || | | | | ||| | ||||| ||| |
Sbjct 918 CACTTGGACCGATGATACAT-TCTT-CCGT-CG--T-C-ACCTTTCCATTGCT-GGA-GC 968
Query 670 -ACTGCTACAGGTGAAAT--TGTTTT-G-T-C-CCAGTACAATACATCTACATCGAAACC 722
|||| | | |||||||| |||||| | | | | ||||| ||||||| | | ||||
Sbjct 969 CACTGTTTCGGGTGAAATAGTGTTTTCGATACGCAAGTAC---ACATCTA-AAC--AACC 1022
Query 723 GTTTTATGTTTTCTACTTCAATCCCGA-TAGAAACACAATCCAAAGTGT-GTTAAAATCC 780
||||||||||||||||||||||||||| | ||| ||| ||||| |||| | ||| ||
Sbjct 1023 GTTTTATGTTTTCTACTTCAATCCCGAATCGAA-CACTCTCCAACGTGTAG--AAAC-CC 1078
Query 781 AAGGTTTTGG 790
||||||||||
Sbjct 1079 AAGGTTTTGG 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5