BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922188
Length=256
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 215 2e-55
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 102 1e-21
AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 91.6 3e-18
AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9... 82.4 2e-15
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 80.5 7e-15
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 215 bits (116), Expect = 2e-55
Identities = 191/226 (85%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 1 GTTGCGTGTTTGAGTTCTAGAGAATGTCGAGAAACATAAATGGTCAGAAACATGTCTACT 60
||| ||| | || ||||||||| ||||||||||||| ||||||| || |||||| ||||
Sbjct 225 GTTACGTATGTGGGTTCTAGAGGATGTCGAGAAACACGAATGGTC-GAGACATGTTTACT 283
Query 61 CTTTGCCGGAGACGATTG--TCTT--GCAGTGTCACTACAATATTTGCGTTGTTGGCATG 116
||||||||||||| |||| | || ||||||| |||||||||||||||||| ||| |||
Sbjct 284 CTTTGCCGGAGACCATTGAAT-TTCAGCAGTGTAACTACAATATTTGCGTTGGTGGGATG 342
Query 117 ACTGCTACAAGTGAAATTGTTTTGTCAGAGTACA-ATACATCTATATCAAAACCGTTTTA 175
| ||||| | ||||||||||||| || |||| || ||| ||||| ||| |||||||||||
Sbjct 343 AATGCTATAGGTGAAATTGTTTTTTCGGAGT-CATATATATCTACATCCAAACCGTTTTA 401
Query 176 TGTTTTCTACTTCAATCCCGAAA-GAAACACAATCCAAAGTGTTAA 220
||||||||||||||||||||||| |||| ||| | || |||||||
Sbjct 402 TGTTTTCTACTTCAATCCCGAAAAGAAAAACACTTTAAGGTGTTAA 447
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 102 bits (55), Expect = 1e-21
Identities = 184/242 (76%), Gaps = 25/242 (10%)
Strand=Plus/Plus
Query 1 GTTGCGTGTTTGAGTTCTAGAGAATGTCGAGAAACATAAATGGTCAGAAACATGTCTACT 60
||||||||| || ||||||||| |||| ||||||| ||||||| |||| ||| ||||
Sbjct 1054 GTTGCGTGTGTGGGTTCTAGAGGATGTTAAGAAACAGCAATGGTC-GAAATATGCCTACA 1112
Query 61 CTTTG-CCGGA-GA-CGATTGTCTTGCAGTGTCACTACAATATTTGCGTTGTTGGCA-TG 116
||| | || || || || | |||| | ||| | | | ||| | | | ||| | |
Sbjct 1113 CTTGGACC-GATGATAGA-T-TCTT-C--CGTC-GT-C-GTGTTTCCATCGCTGG-AGGG 1162
Query 117 ACTGCTACAAGTGAAATTGT-TTTGTCAGA-G-T-ACA-ATACATCTATATCAAAACCGT 171
|||||| | ||||||| || ||| || || | | | | ||||| ||| | | ||||||
Sbjct 1163 ACTGCTTCGGGTGAAATAGTGTTT-TC-GATGCTCAAATATACACCTA-AGC--AACCGT 1217
Query 172 TTTATGTTTTCTACTTCAATCCCGAAAGAAACACAATCCAAAGTGTTAAAATCCAAGGTT 231
|||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 1218 TTTATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATCCAAGGTT 1277
Query 232 TT 233
||
Sbjct 1278 TT 1279
> AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616
REVERSE LENGTH=1596
Length=1596
Score = 91.6 bits (49), Expect = 3e-18
Identities = 184/244 (75%), Gaps = 29/244 (12%)
Strand=Plus/Plus
Query 1 GTTGCGTGTTTGAGTTCTAG-AGAATGTCGAGAAACATAAATGGTCAGAAACATGTCTAC 59
||||| ||| || ||||||| || |||| |||||||| ||||||| ||| ||| ||||
Sbjct 1263 GTTGCATGTGTGGGTTCTAGAAG-ATGTTGAGAAACAGGAATGGTC-TAAATATGCCTAC 1320
Query 60 TCTTTG-CCG--GAGACGATTGTCTTGCAGT-GTCACTACAATATTTGCGTTGTTGGCAT 115
||| | ||| || || | | |||| || | ||||| | ||| | ||| ||| |
Sbjct 1321 ACTTGGACCGATGATAC-A-T-TCTTCCA-TCGTCAC--C----TTTCCATTGCTGG-A- 1368
Query 116 G--ACTGCTACAAGTGAAATTGT-TTTGTCAGA-GTACAA-TACATCTATATCAA-AACC 169
| |||||| | ||||||| || ||| || || | ||| |||| | || | || ||||
Sbjct 1369 GCCACTGCTTCGGGTGAAATAGTGTTT-TC-GATGCGCAAGTACA-C-ATCTAAACAACC 1424
Query 170 GTTTTATGTTTTCTACTTCAATCCCGAAAGAAACACAATCCAAAGTGTTAAAATCCAAGG 229
||||||||||||||||||||||||||||| || || ||||| ||||| ||||||||||
Sbjct 1425 ATTTTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATCCAAGG 1484
Query 230 TTTT 233
||||
Sbjct 1485 TTTT 1488
> AT2G23160.1 | Symbols: | F-box family protein | chr2:9862470-9863744
FORWARD LENGTH=1275
Length=1275
Score = 82.4 bits (44), Expect = 2e-15
Identities = 61/69 (88%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 166 AACCGTTTTATGTTTTCTACTTCAATCCCGAAA-GAAACACAATCCAAAGTGTTAAAATC 224
|||| |||||||||||||||||||||||||||| || ||| ||||| ||||| |||||
Sbjct 1043 AACCATTTTATGTTTTCTACTTCAATCCCGAAAAGAG-CACTCTCCAACGTGTTGAAATC 1101
Query 225 CAAGGTTTT 233
|||||||||
Sbjct 1102 CAAGGTTTT 1110
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 80.5 bits (43), Expect = 7e-15
Identities = 184/246 (75%), Gaps = 33/246 (13%)
Strand=Plus/Plus
Query 1 GTTGCGTGTTTGAGTTCTAGAGAATGTCGAGAAACATAAATGGTCAGAAACATGTCTACT 60
||||| ||| || ||||||||| |||| |||||||| ||||||| ||| ||| ||||
Sbjct 861 GTTGCATGTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTC-TAAATATGCCTACA 919
Query 61 CTTTG-CCG--GAGACGATTGTCTTGCAGT-GTCACTACAATATTTGCGTTGTTGGCATG 116
||| | ||| || || | | |||| | || ||||| | ||| | ||| ||| | |
Sbjct 920 CTTGGACCGATGATAC-A-T-TCTT-CCGTCGTCAC--C----TTTCCATTGCTGG-A-G 967
Query 117 --ACTGCTACAAGTGAAATTGT-TTTGTCAGAGTA--CAA-TACATCTATATCAA-AACC 169
|||| | | ||||||| || ||| || || || ||| |||| | || | || ||||
Sbjct 968 CCACTGTTTCGGGTGAAATAGTGTTT-TC-GA-TACGCAAGTACA-C-ATCTAAACAACC 1022
Query 170 GTTTTATGTTTTCTACTTCAATCCCGAAA-GAAACACAATCCAAAGTGTTA-AAATCCAA 227
|||||||||||||||||||||||||||| ||| ||| ||||| |||| | ||| ||||
Sbjct 1023 GTTTTATGTTTTCTACTTCAATCCCGAATCGAA-CACTCTCCAACGTGT-AGAAACCCAA 1080
Query 228 GGTTTT 233
||||||
Sbjct 1081 GGTTTT 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11662117768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5