BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922193
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30950.1 | Symbols: UFO | F-box family protein | chr1:110361... 2126 0.0
> AT1G30950.1 | Symbols: UFO | F-box family protein | chr1:11036180-11037508
FORWARD LENGTH=1329
Length=1329
Score = 2126 bits (1151), Expect = 0.0
Identities = 1270/1327 (96%), Gaps = 10/1327 (1%)
Strand=Plus/Plus
Query 21 ATGGATTCAAATGTGTTCATCAATAACCCATCTTTAACCTTACCTTTCTCTTACACCTTT 80
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGATTCAACTGTGTTCATCAATAACCCATCTTTAACCTTACCTTTCTCTTACACATTT 60
Query 81 ACCAGTAGCAGCAACAGTAGCACAACCACAAGCACCACCACAGACTCAAGCTCCGGTCAA 140
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 61 ACCAGTAGCAGCAACAGTAGCACAACAACGAGCACCACCACAGACTCAAGCTCCGGTCAA 120
Query 141 TGGATGGACGGTCGGATTTGGAGCAAGCTACCACCTCCACTTCTTGACCGCATCATCGCT 200
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||
Sbjct 121 TGGATGGACGGTCGGATTTGGAGCAAGCTACCACCTCCTCTTCTTGACCGCGTCATTGCT 180
Query 201 TTTCTTCCACCTCCCGCGTTTTTCCGGACACGTTGCGTCTGCAAGAGATTCTACAGTCTA 260
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCTTCCACCTCCGGCGTTTTTCCGGACACGTTGCGTCTGCAAGAGATTCTACAGTCTA 240
Query 261 CTTTTCTCCAACGCGTTCCTCGAGACATATCTACAACTACTTCCTCTCGGACACAACTGT 320
|||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 CTTTTCTCCAACACCTTCCTCGAGACATATCTACAACTACTTCCTCTCCGACACAACTGT 300
Query 321 TTCCTCTTCTTCAAACACAAAACCCTAAAGAGCTACATTTACAAGAGAGGAGGAGGAACA 380
|||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||
Sbjct 301 TTCCTCTTCTTCAAACACAAAACCCTAAAGAGTTACATTTAC-A-AGA-GAGGAGGAACA 357
Query 381 AACGATGATGATTCCAGTAAAGCTGAAGGCTTTTTGTTTGATCCTAATGAGATCCGATGG 440
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AACGATGATGATTCCAATAAAGCTGAAGGCTTTTTGTTTGATCCTAATGAGATCCGATGG 417
Query 441 TACCGTCTCTCTTTTGCTTATATCCCTTCAGGGTATTATCCTTCTGGATCATCAGGAGGG 500
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 418 TACCGTCTCTCTTTTGCTTATATCCCTTCAGGGTTTTATCCTTCAGGATCATCAGGAGGG 477
Query 501 TTAGTGAGTTGGGTCTCCGAAGAAGCTGGTCTTAAAACCATTCTCTTATGTAACCCTCTT 560
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 TTAGTGAGTTGGGTCTCCGAAGAAGCTGGTCTTAAAACCATTCTCTTGTGTAACCCTCTT 537
Query 561 CTTGGATCCGTGAGTCAGTTGCCACCAATTTCAAGACCAAGGCTTTTCCCTTCGATAGGT 620
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 538 GTCGGATCCGTGAGTCAGTTGCCACCAATATCAAGGCCAAGGCTTTTCCCTTCGATAGGT 597
Query 621 CTCTCAGTAACACCAACCTCTATTGATGTTACTGTCGCTGGAGACGATCTCATATCTCCT 680
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 CTCTCGGTAACACCAACCTCTATTGATGTTACTGTCGCTGGAGATGATCTCATATCTCCT 657
Query 681 TACGCCGTGAAAAACCTCTCCTCGGAAAGTTTCCATGTTGACGCAGGCGGATTCTTCTCC 740
||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||
Sbjct 658 TACGCTGTGAAAAACCTCTCATCGGAGAGTTTCCATGTCGACGCCGGCGGATTCTTTTCC 717
Query 741 CTCTGGGCGATGACTTCTTCTTTGCCACGGCTTTGTAGCTTGGAATCTGGTAAGATGGTT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTCTGGGCGATGACTTCTTCTTTGCCACGGCTTTGTAGCTTGGAATCTGGTAAGATGGTT 777
Query 801 TACGTGCAAGGCAAGTTTTACTGTATGAACTATAGTCCTTTTAGCGTTTTGTCCTATGAG 860
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 778 TACGTGCAAGGCAAGTTTTACTGTATGAACTATAGCCCTTTTAGCGTTTTGTCCTATGAA 837
Query 861 GTTACTGGAAACCGGTGGATCAAGATTCAAGCTCCCATGAGGAGGTTTCTCCGATCTCCA 920
||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 838 GTTACTGGAAACCGGTGGATCAAGATTCAAGCTCCGATGAGGAGATTTCTCAGATCTCCA 897
Query 921 AGCTTGTTAGAGAGCAAAGGGAGGCTTATTCTTGTAGCAGCCGTTGAGAAAAGCAAGCTT 980
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 898 AGCTTGTTAGAGAGCAAAGGGAGGCTTATTCTTGTAGCAGCTGTTGAGAAAAGCAAG-TT 956
Query 981 -AACGTTCCCAAAAGCCTTA-GGCTTTGGAGTTTGCAACAAGATAACGCCACGTGGGTCG 1038
|||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||
Sbjct 957 GAACGTTCCCAAAAGCC-TACGACTTTGGAGTTTGCAACAAGATAACGCCACATGGGTCG 1015
Query 1039 AGATTGAACGGATGCCTCAGCCGCTCTACACACAGTTTGCAGCTGAAGAAGGCGGAAAAG 1098
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1016 AGATCGAACGGATGCCTCAGCCGCTCTACACACAGTTTGCAGCAGAAGAAGGTGGAAAAG 1075
Query 1099 GATTCGAGTGTGTCGGAAATCAAGAGTTTGTAATGATTGTGTTAAGAGGAACCTCGTTGC 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GATTCGAGTGTGTCGGAAATCAAGAGTTTGTAATGATTGTGTTAAGAGGAACCTCGTTGC 1135
Query 1159 AGTTGCTGTTTGATATGGTAAGAAAAAGCTGGCTGTGGGTCCCACCGTGTCCTTACTCCG 1218
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGTTGCTGTTTGATATAGTGAGAAAAAGCTGGCTGTGGGTCCCACCGTGTCCTTACTCCG 1195
Query 1219 GCTGTGGTGGCAGTGGCTCAGG---CGGTTCAGACGGTGAGGTGTTGCAGGGTTTTGCTT 1275
|| |||||||| || ||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 1196 GCAGTGGTGGCGGTAGCTCAGGTGGCGGTTCAGACGGAGAGGTCTTGCAGGGTTTTGCTT 1255
Query 1276 ATGACCCGGTACTTACTACACCGGTGGTTAGTCTTCTTGATCAGTTAACACTTCCATTTC 1335
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATGACCCGGTGCTTACTACACCGGTGGTTAGTCTTCTTGATCAGTTAACACTTCCATTTC 1315
Query 1336 CTGGAGT 1342
|||||||
Sbjct 1316 CTGGAGT 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67720535205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5