BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922194
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30960.1 | Symbols: | GTP-binding family protein | chr1:110... 2089 0.0
> AT1G30960.1 | Symbols: | GTP-binding family protein | chr1:11037612-11040033
REVERSE LENGTH=1513
Length=1513
Score = 2089 bits (1131), Expect = 0.0
Identities = 1283/1355 (95%), Gaps = 16/1355 (1%)
Strand=Plus/Plus
Query 7 CCATTGTTGCAAAAATGAAAGCTTTTAGATCTCTACGTATACTAATTTCCATCT--C--A 62
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 43 CCATTGTTACAAAAATGAAAGCTTTTAGATCTCTACGTATACTAATTTCCATCTCACGAA 102
Query 63 CGA--AC--A-ACAACACCTCACAAAT-CCCATCAAGCTCAAAACTTTCTCCGCCGATTT 116
||| || | |||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 103 CGACGACGAAGACAACACCTC-GTAATCCCCATCAAGCACAAAACTTTCTCCGCCGATTT 161
Query 117 TACTCAGCGCAGCCGAATCTAGACGAACCCACTTCCGTCAACGAAGACGGAACAAGCAGC 176
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||
Sbjct 162 TACTCAGCGCAGCCGAATCTAGACGAACCCACTTCCATCAATGAAGACGGATCAAGCAGC 221
Query 177 GACTCTGTTTTCGATAGTAGTCAATACCCAATCGAAGATTCCCATGGAGATTCTGTGAAG 236
||||||||||||||||||||||||||||||||||| |||||| ||| |||||| ||||||
Sbjct 222 GACTCTGTTTTCGATAGTAGTCAATACCCAATCGACGATTCCAATGTAGATTCCGTGAAG 281
Query 237 AAGCCCAAGGAAGCAACTTGGGATAAAGGGTACAGAGAAAGAGTGAACAAAGCCTTCTTT 296
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 282 AAGCCCAAGGAAGCAACTTGGGATAAAGGGTACAGAGAAAGAGTAAACAAAGCCTTCTTT 341
Query 297 GGAAACTTGACAGAGAAAGGTAAATTGAAAGTTGCAGAAGAAGTGAGCTCTGATGATGAT 356
|||||||||||||||||||||||| |||||||||||||||||| ||| ||||| | |||
Sbjct 342 GGAAACTTGACAGAGAAAGGTAAAGTGAAAGTTGCAGAAGAAGAGAGTTCTGA--A-GAT 398
Query 357 GATGAGGATAGTGTTGATAGGTCTAGGATTCTCGCTAAGGCTCTGTTAGAGGCGGCGTTG 416
||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 399 GATGAGGATAGTGTTGATAGGTCAAGGATTCTCGCTAAGGCTCTCTTAGAGGCTGCGTTA 458
Query 417 GAGTCACCTGATGAAGAACTTGGTGAAGGTGAAGTTAGAGAAGAAGATCAGAAGTCTCTT 476
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 459 GAGTCACCAGATGAAGAACTTGGTGAAGGTGAAGTTAGAGAAGAAGATCAGAAGTCGCTT 518
Query 477 AATGTCGGTATCATCGGTCCACCGAACGCCGGGAAATCGTCGCTGACTAATTTCATGGTT 536
|||||||| |||||||||||||| || || || ||||| |||||||||||||||||||||
Sbjct 519 AATGTCGGCATCATCGGTCCACCTAATGCAGGAAAATCTTCGCTGACTAATTTCATGGTT 578
Query 537 GGAACAAAGGTTGCTGCTGCTTCACGGAAGACTAACACGACGACTCATGAAGTGTTAGGA 596
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 579 GGAACAAAGGTTGCTGCTGCTTCACGGAAGACTAACACGACGACACATGAAGTGTTAGGA 638
Query 597 GTATTGACAAAAGGGGATACACAAGTCTGTTTCTTCGATACTCCGGGTCTGATGCTGAAG 656
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GTATTGACAAAAGGAGATACACAAGTCTGTTTCTTCGATACTCCGGGTCTGATGCTGAAG 698
Query 657 AAAAGCGGATATGGTTACAAAGATATTAAATCTCGTGTGCAAAATGCTTGGACTTCTGTT 716
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 699 AAAAGCGGATATGGTTACAAAGACATCAAGGCTCGTGTGCAAAATGCTTGGACTTCTGTT 758
Query 717 GACCTGTTTGATGTCCTCATTGTTATGTTTGATGTCCATAGGCATCTCATGAGTCCCGAT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GACCTGTTTGATGTCCTCATTGTTATGTTTGATGTCCATAGGCATCTCATGAGTCCCGAT 818
Query 777 TCAAGAGTGGTACGCTTGATCAAATACATGGGCGAAGAAGAAAATCCGAAACAAAAGCGC 836
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 819 TCAAGAGTGGTACGCTTGATCAAATACATGGGAGAAGAAGAAAATCCGAAACAAAAGCGC 878
Query 837 ATTTTATGTATGAACAAAGTTGATCTGGTTGAGAAGAAAAAGGATCTGTTAAAGGTTGCT 896
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 879 GTTTTATGTATGAACAAAGTTGATCTGGTTGAGAAGAAAAAGGATCTATTAAAGGTTGCT 938
Query 897 GAGGAGTTCCAAGATCTTCCGGCATATGAAAGGTACTTCATGATATCTGGACTTAAGGGA 956
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 939 GAGGAGTTCCAAGATCTTCCGGCATATGAAAGATACTTCATGATATCGGGACTTAAGGGA 998
Query 957 TCAGGAGTTAAAGGTCTTAGCCAATATTTAATGGATCAGGCAGTaaaaaaaCCATGGGAA 1016
|||||||| |||| |||| |||||| |||||||||||||| || |||||||||||||||
Sbjct 999 TCAGGAGTGAAAGATCTTTCCCAATACTTAATGGATCAGGCTGTTAAAAAACCATGGGAA 1058
Query 1017 GAAGATGCATTCACGATGAGTGAAGAAGTCTTGAAGAACATTTCTCTTGAAGTTGTTAGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GAAGATGCATTCACGATGAGTGAAGAAGTCTTGAAGAACATTTCTCTTGAAGTTGTTAGG 1118
Query 1077 GAGAGATTACTAGACCATGTTCATCAGGAAATCCCATATGG-CGTCGAGCACCGTCTAGT 1135
|||||||||||||||||||| ||||||||||| |||||||| | | ||||||||||||||
Sbjct 1119 GAGAGATTACTAGACCATGTCCATCAGGAAATACCATATGGTC-TGGAGCACCGTCTAGT 1177
Query 1136 GGACTGGAAAGAGCTGCGTGACGGGTCTCTTAGAATTGAACAGCATCTCATCACTCCTAA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 GGACTGGAAAGAGCTGCGTGACGGGTCTCTTAGAATTGAACAGCATCTCATCACTCCTAA 1237
Query 1196 ACCTAGCCAACGCAAGATTCTTGTAGGCAAGGGCGGTTCCAAGATTGGGAGGATAGGAAT 1255
|| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1238 ACTTAGCCAACGCAAGATTCTTGTAGGCAAGGGCGGTTGCAAGATCGGGAGGATAGGAAT 1297
Query 1256 TGAGGCAAATGAAGAACTCAGGAGAATAATGAACCGAAAAGTTCATCTCATTCTCCAGGT 1315
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1298 TGAGGCCAATGAAGAACTCAGGAGAATAATGAACCGCAAAGTTCATCTCATTCTCCAGGT 1357
Query 1316 TAAGCTCAAGTGAAACCATTCTCCGAAGAATTATG 1350
|||||||||||||||||||||||| ||| |||||
Sbjct 1358 TAAGCTCAAGTGAAACCATTCTCCCAAGGGTTATG 1392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5