BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922208
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 287 1e-76
AT3G56890.1 | Symbols: | F-box associated ubiquitination effec... 145 9e-34
AT5G38810.1 | Symbols: | F-box and associated interaction doma... 121 1e-26
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 91.6 1e-17
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 287 bits (155), Expect = 1e-76
Identities = 304/372 (82%), Gaps = 25/372 (7%)
Strand=Plus/Plus
Query 485 ATTGATAAACTATAAGGGGAAAGT-GTGTGGGATTAAGTTGGA-GTATGCTTATGATGGT 542
|||||||||||||||||| ||||| | ||| |||||| || || | |||| ||||| ||
Sbjct 747 ATTGATAAACTATAAGGGTAAAGTAG-GTGTGATTAA-TTTGACGCATGCCTATGAACGT 804
Query 543 GGATTTCCCCTTAAGTTGA-GTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTC 601
| |||||||||| |||| | || || ||||||||||||| |||||||||||||||||||
Sbjct 805 GTATTTCCCCTTCAGTT-ACGTATGACGGTTCTAGAGGATTTTGAGAAACAGGAATGGTC 863
Query 602 GA-ATTAT-TCCTACTGTCTGGA-GGTTAAGAATGTTAAG--GCTAACTGCAATCTTTCT 656
|| | ||| | |||| | | || || | ||||| | || | ||| | || ||||
Sbjct 864 GACA-TATGT-CTACACT-TTGATGGCTGAGAAT-AT-AGTCGTTAA--G-TATGTTTCC 915
Query 657 GTTGTTGGGATGACGGCTAGAGGTGAAATTGTTTTGGT-TAAGGAGGATGCATTTAAACC 715
|| ||||||||||| |||| |||||| ||||||||||| || | |||||| |||||
Sbjct 916 GTGGTTGGGATGACTGCTACAGGTGATATTGTTTTGGTGAAAACA-AATGCATGCAAACC 974
Query 716 GTTTTATGTTTTCTACTTTAATCCCGAAAGGAACACTCTCCAAAGTGTTGAAATCCAAGG 775
||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 975 GTTTTATGTGTTCTACTTTAATCCCGGAAGGAACACTCTCCTAAGTGTTGAAATCCAAGG 1034
Query 776 TGTTGGAGAAGTCCAAAAATGG-TCTAACAT-CGATATAGTTTTCGGCTTTGTAGACCAT 833
||||||||||| ||| ||||| || ||| | | ||| ||||| || |||||||||||||
Sbjct 1035 TGTTGGAGAAGACCACAAATGCCTC-AACTTTC-ATACAGTTTGCGCCTTTGTAGACCAT 1092
Query 834 GTAGAGGATCTT 845
||||||||||||
Sbjct 1093 GTAGAGGATCTT 1104
> AT3G56890.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:21062990-21063717 REVERSE LENGTH=660
Length=660
Score = 145 bits (78), Expect = 9e-34
Identities = 187/237 (79%), Gaps = 18/237 (8%)
Strand=Plus/Plus
Query 556 AGTTGAGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGG-TCGAATTAT-TCCTA 613
||||| |||||||||||||||||||||||||||||||||||||| || || ||| || ||
Sbjct 263 AGTTGTGTTTGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGGTC-AAGTATGTC-TA 320
Query 614 C--TGT-CTGGAGGTT-AAGAATGTTAAGGCTAACTGCAA-TCTTTCTGTTGTTGG-GAT 667
| | | | |||| | ||| || || | |||| | | |||| |||| ||| | |
Sbjct 321 CACTTTACCGGAGAATGAAGTCC-TT--GGTTC-CTGCGAGT-TTTCAGTTGCTGGAG-T 374
Query 668 GACGGCTAGAGGTGAAATTGTTTTG-GTTAAGGAGGATGCATTTAAACCGTTTTATGTTT 726
||| || ||||| || ||||||||| || | | || || ||| |||||||| ||||| |
Sbjct 375 GACTGCAAGAGGCGATATTGTTTTGTGT-ATGAAGTATACATGTAAACCGTACTATGTAT 433
Query 727 TCTACTTTAATCCCGAAAGGAACACTCTCCAAAGTGTTGAAATCCAAGGTGTTGGAG 783
||||||| ||||||||| ||| || |||||||||||||||||||||||| ||||||
Sbjct 434 TCTACTTCGATCCCGAAAAGAAAACCCTCCAAAGTGTTGAAATCCAAGGTTTTGGAG 490
> AT5G38810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:15540484-15541540 REVERSE LENGTH=780
Length=780
Score = 121 bits (65), Expect = 1e-26
Identities = 151/191 (79%), Gaps = 11/191 (6%)
Strand=Plus/Plus
Query 421 TAGTTTGTTTTGATGTTAGGACTGAGAAATTCAAGTTTATTGA-CG--CAGA-AT-GCT- 474
|||||| ||| |||||||| ||||||||||||||||| |||| | ||| | ||
Sbjct 440 TAGTTTCCTTTAATGTTAGGTCTGAGAAATTCAAGTTTCTTGATGGAAAAGACTTCTCTA 499
Query 475 ATTATCAT--A-AATTGATAAACTATAAGGGGAAAGT-GTGTGGGATTAAGTTGGAGTAT 530
||| |||| | |||| |||||||| ||||| ||| | | ||| || ||| ||||||| |
Sbjct 500 ATTTTCATAGAGAATTTATAAACTACAAGGGTAAATTAG-GTGTGACTAAATTGGAGTGT 558
Query 531 GCTTATGATGGTGGATTTCCCCTTAAGTTGAGTTTGTGGGTTCTAGAGGATGTTGAGAAA 590
| | || || |||| ||||| | ||||| || ||||||||||||||||||||||||||
Sbjct 559 GATGCTGGTGATGGACATCCCCGTGAGTTGTGTGTGTGGGTTCTAGAGGATGTTGAGAAA 618
Query 591 CAGGAATGGTC 601
|||||||||||
Sbjct 619 CAGGAATGGTC 629
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 91.6 bits (49), Expect = 1e-17
Identities = 175/233 (75%), Gaps = 19/233 (8%)
Strand=Plus/Plus
Query 565 TGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCGAATTATTCCTACTGTCTGGAG- 623
||||||||||||||||||||||||||||||||||||| || ||| ||||| | ||||
Sbjct 869 TGTGGGTTCTAGAGGATGTTGAGAAACAGGAATGGTCTAAATATGCCTACACT-TGGACC 927
Query 624 GTTAAGA-ATG-TTAAGGCTAACTGCAATCTTTCTGTTGTTGG-GATGACGGCTA-GAGG 679
| | | | || || | | | || ||||| ||| ||| | || | | | ||
Sbjct 928 GATGATACATTCTTCCGTCG---T-CAC-CTTTCCATTGCTGGAGCC-ACTGTTTCG-GG 980
Query 680 TGAAAT--TGTTTTGGTTAAGGAGG-ATGCATTTAAAC--C-GTTTTATGTTTTCTACTT 733
|||||| |||||| | || | | | | ||| ||||| | ||||||||||||||||||
Sbjct 981 TGAAATAGTGTTTTCGATACGCAAGTACACATCTAAACAACCGTTTTATGTTTTCTACTT 1040
Query 734 TAATCCCGAAAGGAACACTCTCCAAAGTGTTGAAATCCAAGGTGTTGGAGAAG 786
||||||||| ||||||||||||| |||| |||| ||||||| |||| ||||
Sbjct 1041 CAATCCCGAATCGAACACTCTCCAACGTGTAGAAACCCAAGGTTTTGGTGAAG 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5