BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922209
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 191 1e-47
AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6... 91.6 1e-17
AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-84... 87.9 2e-16
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 84.2 2e-15
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 67.6 2e-10
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 191 bits (103), Expect = 1e-47
Identities = 396/528 (75%), Gaps = 58/528 (11%)
Strand=Plus/Plus
Query 120 TGTGATATGTAACCCTAGCACGGGACACTATTCGATCTTACCTAAACTGAGAATGGACAA 179
||||||||||||||||| ||||||||| ||| |||||||| | |||||| || | |
Sbjct 396 TGTGATATGTAACCCTATCACGGGACAATATGCGATCTTA-C--AACTGATAACATTCCA 452
Query 180 AAAGACA-AGAAGCTTTTTAGGGTTTGATCCGATTGAGAAGCAGTTCAAGGTGTTGTTCA 238
||| | ||||||||||||||||||||||||||||| ||||| |||||||| ||| ||
Sbjct 453 CGAGA-AGAGAAGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCGCA 511
Query 239 TGATGGGTATTGTTGGTAGTGAGAGG-GTTAATCTTATTATGACATTAGGAAC-TGG-AA 295
||| || || | || || | | ||| | | |||| ||||||||| ||| ||| ||
Sbjct 512 TGAAATATAATGATCGTGGT-ATTGTTGTTCACCATATTCTGACATTAG-AACCTGGCAA 569
Query 296 AGTTAAGGTGGAGGAATATCCAATGTCCTTTTA-CCCTT-AATCCCTTTCGGTTGTGTGA 353
| | | ||||||| || |||| |||||| || | ||| | || || |||| | | | ||
Sbjct 570 AATGA-GGTGGAGAAAAATCCGATGTCCCTT-AGCCCATGAA-CC-TTTC--T-G-G-GA 620
Query 354 AGGGATATGTATCAATGGGGTTTTGTATTACTTAGCTAAAC-ATATTGATGAACGAAATC 412
|| |||||| ||||||||||||||||||||||||| ||| | | ||||| | | ||
Sbjct 621 AGAGATATGCGCCAATGGGGTTTTGTATTACTTAGCTGAACCA-ACTGATGGAGGG--TC 677
Query 413 AGAAATGTTATGTGATA-GTTTGCTTTGATGTTAGGTATGAGAAAT-CTAAGTTCCTAGA 470
| | |||||||| ||| ||||||||||| ||| |||||||| | || || | ||
Sbjct 678 -----T-T-ATGTGATATGTT-GCTTTGATGTTCGGTCTGAGAAATTCAAATTTATT-GA 728
Query 471 CTCAGTCTGCTT-G-T--TTG----AT-CAATTGATAAACTATAAGGGGAAATTAGGTGG 521
| || ||||| | | || || |||||||| || |||||||| ||| |||||||
Sbjct 729 CGCAAAATGCTTTGGTGATTTCTCTATTCAATTGATCAATTATAAGGGTAAACTAGGTGG 788
Query 522 -ATTTTATTTG-AACTATGCTTCTAGT-GATGGATTTCC--CC-TTAAGTTG-ACTATGT 574
||| | ||| || |||| | | || |||||| | || || ||||| | |||||
Sbjct 789 GATT--AGTTGGAAGTATGATACC-GTCGATGGAAAGCGTACCGTTGAGTTGTA-TATGT 844
Query 575 GGATTCTAGAGGATGTCGAGAAACAAGAA-TGGTCCAAATATGTCTAC 621
|| |||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 845 GGGTTCTAGAGGATGTCGAGAAACA-GAAATGGTCCAAATACGTCTAC 891
> AT2G15640.1 | Symbols: | F-box family protein | chr2:6816792-6818205
REVERSE LENGTH=1414
Length=1414
Score = 91.6 bits (49), Expect = 1e-17
Identities = 58/62 (94%), Gaps = 2/62 (3%)
Strand=Plus/Plus
Query 733 TATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAAAGTGTTAAAATCACA-GGTTT 791
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1220 TATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAACGTGTTGAAATC-CAAGGTTT 1278
Query 792 TG 793
||
Sbjct 1279 TG 1280
> AT2G02890.1 | Symbols: | F-box family protein | chr2:843913-846616
REVERSE LENGTH=1596
Length=1596
Score = 87.9 bits (47), Expect = 2e-16
Identities = 60/66 (91%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 729 ATTATATGTTTTCTACTTCAATCCCGAAAGGAACACTCTCCAAAGTGTTAAAATCACA-G 787
||| ||||||||||||||||||||||||||||| ||||||||| ||||| ||||| || |
Sbjct 1425 ATTTTATGTTTTCTACTTCAATCCCGAAAGGAATACTCTCCAACGTGTTGAAATC-CAAG 1483
Query 788 GTTTTG 793
||||||
Sbjct 1484 GTTTTG 1489
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 84.2 bits (45), Expect = 2e-15
Identities = 89/109 (82%), Gaps = 8/109 (7%)
Strand=Plus/Plus
Query 350 GTGAAGGGATATGTATCAATGGGGTTTTGTATTACTTAGCTAAACATATTGATGAACGA- 408
|||| |||||||| ||||||||||||||||||| ||||||| | | | |||| | |
Sbjct 593 GTGATGGGATATGCATCAATGGGGTTTTGTATTTCTTAGCT-GAGAGA--AATGAGCTAG 649
Query 409 AATCAGAAATGTTATGTGATAGTTTGCTTTGATGTTAGGTATGAGAAAT 457
| || | | ||||||||||||||||||||||||||||| ||||||||
Sbjct 650 AGTCTG--A--TTATGTGATAGTTTGCTTTGATGTTAGGTCTGAGAAAT 694
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 350 GTGAAGGGATATGTATCAATGGGGTTTTGTATTACTTAG 388
|||||||| ||||||||||||||||||||||||||||||
Sbjct 632 GTGAAGGGGTATGTATCAATGGGGTTTTGTATTACTTAG 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5