BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922210

Length=763
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33020.1 | Symbols:  | F-box and associated interaction doma...  99.0    6e-20
  AT1G31080.1 | Symbols:  | F-box family protein | chr1:11091832-...  91.6    1e-17
  AT1G30920.1 | Symbols:  | F-box family protein | chr1:11004242-...  65.8    6e-10


> AT1G33020.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647

 Score = 99.0 bits (53),  Expect = 6e-20
 Identities = 154/200 (77%), Gaps = 18/200 (9%)
 Strand=Plus/Plus

Query  45   TTTTCTAGGGTTTGATCCGATTGACAAGCAATTCAAGGCATTGTTCATTGCT-TATCCAT  103
            |||| ||||||||||||||||||||||||||||||||| ||||  ||| |   |||  ||
Sbjct  466  TTTT-TAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCGCAT-GAAATATA-AT  522

Query  104  -ATTGT--TCT-GATGATCAGGAAATTCTGACAGTAGGAAC-TGAAAAAATG-GAATGGA  157
             || ||  | | | || |||  | ||||||||| ||| ||| ||  |||||| |  ||||
Sbjct  523  GATCGTGGTATTGTTGTTCACCATATTCTGACATTAG-AACCTGGCAAAATGAGG-TGGA  580

Query  158  GGAAGATCC-ATTGTCCCTTAACCCATCATCCTATTTCTA--AAGGGATATGCATCAACG  214
            | || |||| || |||||||| ||||| | ||| || ||   ||| |||||||  ||| |
Sbjct  581  GAAAAATCCGAT-GTCCCTTAGCCCATGAACCT-TT-CTGGGAAGAGATATGCGCCAATG  637

Query  215  GGGTTTTGTATTACTTCGCT  234
            |||||||||||||||| |||
Sbjct  638  GGGTTTTGTATTACTTAGCT  657


> AT1G31080.1 | Symbols:  | F-box family protein | chr1:11091832-11092899 
FORWARD LENGTH=1068
Length=1068

 Score = 91.6 bits (49),  Expect = 1e-17
 Identities = 113/142 (80%), Gaps = 11/142 (8%)
 Strand=Plus/Plus

Query  447  GTTGCGTATGTGGGTTCTAGAGGATGTCAAGAAACATGAATGGTCGAAACATGTCTACAC  506
            |||||||||||||||||||||||||||| ||||| | |||||| ||| | ||| ||||||
Sbjct  606  GTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGAGATATGCCTACAC  665

Query  507  TTTG---CCGGAGAATGAAGTC-ATTA-AAGG-CTG-GTATGATTTAATCGTTGGAGTGA  559
            ||||   || |||||| ||||| |  | || | ||  |||| || |  | ||||| |  |
Sbjct  666  TTTGAGGCCTGAGAATAAAGTCGAGGACAATGACTATGTAT-ATGT--T-GTTGGGGCAA  721

Query  560  CTGCTACAGGTGAAATTGTTTT  581
            ||||| ||||||||||||||||
Sbjct  722  CTGCTTCAGGTGAAATTGTTTT  743


> AT1G30920.1 | Symbols:  | F-box family protein | chr1:11004242-11005444 
REVERSE LENGTH=1203
Length=1203

 Score = 65.8 bits (35),  Expect = 6e-10
 Identities = 40/42 (95%), Gaps = 1/42 (2%)
 Strand=Plus/Plus

Query  45   TTTTCTAGGGTTTGATCCGATTGACAAGCAATTCAAGGCATT  86
            |||| ||||||||||||||||||||||||||||||||| |||
Sbjct  475  TTTT-TAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATT  515



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37072800486


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5