BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922213 Length=967 Score E Sequences producing significant alignments: (Bits) Value AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-... 331 7e-90 AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 318 5e-86 AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-... 75.0 1e-12 > AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-11095649 FORWARD LENGTH=936 Length=936 Score = 331 bits (179), Expect = 7e-90 Identities = 368/454 (81%), Gaps = 33/454 (7%) Strand=Plus/Plus Query 530 TAAACTAGGTGTGATTAATTTGGAGGATGATTATTATGGAGGATTT-TCCCTTAAGTTAC 588 |||||||||||||||||||||||||||||||||| |||| |||| | ||| ||||||||| Sbjct 477 TAAACTAGGTGTGATTAATTTGGAGGATGATTATGATGGTGGATATCTCC-TTAAGTTAC 535 Query 589 GTATGTGGGTTCTAGAGAATGTCGAGAAACATGAA-TGGAGTACATATG-CCTACACATT 646 |||||| ||||||||| || |||||||||| ||| |||| |||||||| || |||| || Sbjct 536 GTATGTTTGTTCTAGAGGATTTCGAGAAACA-GAAATGGACTACATATGTCC-ACACTTT 593 Query 647 GAGGGCTGAGAATAAAGTCGTTAAGGTTAGTCAAAATCTGTCCGTTATTGGAGTGACTGG 706 ||||| |||||||||| || |||| | | | ||| | | ||| |||| | |||| Sbjct 594 GAGGGATGAGAATAAAATC---AAGGACAATGACAATGTTTATGTTGTTGGGGCAACTGC 650 Query 707 TTCGGGTGACATTGTTTTGGCGAACCATAATTTATATAAACCGATTTATGT-TTTCTACT 765 ||| ||| | ||||||||||||| |||| |||||||||| ||||||| ||| |||| Sbjct 651 TTCAGGTCAAATTGTTTTGGCGAGGAATAAGGCATATAAACCGTTTTATGTGTTT-TACT 709 Query 766 TTAATCCCGAAAGGAACACTCTCCTATGTGTTGAAATCCAAGGTGTTAGGGAAGAGGAAG 825 |||||||||||| || |||||| | | |||||||||||||||||||||| ||||| |||| Sbjct 710 TTAATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAAG 769 Query 826 AATGGTTTAAAAATCATAAAGTTTACTGCTTTGTAAACCATGTAGAGGATCTTAGATTTG 885 | |||||| |||| |||||||| ||||||| ||||||| ||||||||||| |||| Sbjct 770 ATTGGTTT------CATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTG 823 Query 886 ATGTTATGAAGACAACAT---CT--A---T--A-A-GCCCACCAGAACAGAGCACATCAA 933 |||||||||||||||||| || | | | | | ||| ||||||||| |||||||| Sbjct 824 ATGTTATGAAGACAACATATGCTGCAACATCGATAAGACCAGCAGAACAGAACACATCAA 883 Query 934 CATCATCTATCTAGAGAAGCTCATCAAGTGAGGA 967 ||||||||| |||||| ||||| |||||||| Sbjct 884 CATCATCTA----GAGAAGATCATCTAGTGAGGA 913 > AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | chr1:11007112-11008238 REVERSE LENGTH=1127 Length=1127 Score = 318 bits (172), Expect = 5e-86 Identities = 296/355 (83%), Gaps = 12/355 (3%) Strand=Plus/Plus Query 1 TAGTAGCCACCGATTTTCATATGAAGTTTTCTGAAGACACAA--CCATATACTA-TCGTA 57 |||||||| |||||||||||||||| || || |||||| || ||| | || | | ||| Sbjct 315 TAGTAGCCGCCGATTTTCATATGAAATTCTCCAAAGACATAAGCCCA-A-AC-AGTTGTA 371 Query 58 GCTATGCTTCTGGTTTGATATATTTCCCTAACATGCGGATCTCAAACGAGAATGACGATG 117 | ||||||||| |||||||||||||||||| || | ||||||||| ||| ||||||| Sbjct 372 GTTATGCTTCTAGTTTGATATATTTCCCTATTATCCAGATCTCAAAGGAGTGGGACGATG 431 Query 118 TAGTGCGTATGATATGTAACCCTAGCACGGGACAGTATGCAATCTTACCACTTGACTTGA 177 ||||||| ||||||||||||||||||| |||| ||||| |||||||||| |||| | | Sbjct 432 AAGTGCGTGCGATATGTAACCCTAGCACGAGACAATATGCGATCTTACCACCTGACCTCA 491 Query 178 GAACAGGGTACCAAGACGTAGG-CGGCTTTTTAGGGTTTGATCCGATTGGCAAGCAATTC 236 ||||| ||||||| || | || | | ||||||| |||||||||||||||||||||||| Sbjct 492 GAACAACGTACCAAAACTTCGGTC-CCCTTTTAGGATTTGATCCGATTGGCAAGCAATTC 550 Query 237 AAGGTTTTGGTCTTTAAAC-GTAGAGTCG-ATGATAAATTGGTTTATCATATTATGATAT 294 |||||| | ||||| || | ||||||||| | || ||||||||||||||||| ||| || Sbjct 551 AAGGTTCTAGTCTTCAA-CTGTAGAGTCGGAA-ATGAATTGGTTTATCATATTTTGACAT 608 Query 295 TAGGAACAGAAAATATGAGGTGGAGGGAGAACATATGTCCCTTAACCTATGGACC 349 ||||||| |||||| |||||||||| |||| |||||||||||| ||||||| ||| Sbjct 609 TAGGAACTGAAAATGTGAGGTGGAGAGAGATCATATGTCCCTTTACCTATGAACC 663 > AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-25100625 REVERSE LENGTH=1176 Length=1176 Score = 75.0 bits (40), Expect = 1e-12 Identities = 198/269 (74%), Gaps = 31/269 (12%) Strand=Plus/Plus Query 210 GGGTTTGATCCGATTGGCAAGCAATTCAAGGTTTTGGT-CTTTAAACGTAGAGTCGATGA 268 |||||||| ||||||||||||||||||||||||||||| ||| || | | || | || Sbjct 376 GGGTTTGACCCGATTGGCAAGCAATTCAAGGTTTTGGTTCTT-AA-CAT----TCTA-GA 428 Query 269 TAAATTGGTTTATCATATTATGATATTAGGAACAGAAAAT-ATGAGGTGGAGGGAGAA-C 326 || | || || || | ||| |||||||||||||||| || || |||||| || | | Sbjct 429 CAA-TCA-TT-AT-AT-TC-TGACATTAGGAACAGAAAATGATAAG-TGGAGG-AGTATC 480 Query 327 -ATATGTCCCTTAACCTATGGACCCTATGGTTATCGTTGGGAACATATATGTATTAATGG 385 | | || |||||| ||| | || | ||| | | | | ||| | |||||||| Sbjct 481 CAAA-GTTCCTTAAGGTATCGTCCTTGTGGGCAAAGCCCG-A---TAT--GCATTAATGG 533 Query 386 TGTCTTGTATTACATAGCTG-CTGACCCTGATAA-AGAGC-A-TGATATGATAGGTTGTT 441 || ||||||||||||||| | || | | | || | | |||| |||||||||||| Sbjct 534 AGTTTTGTATTACATAGCTTAC-GATACACAGGACAGCTCGAATGATGTGATAGGTTGTT 592 Query 442 TTGATGTTAGGTCTGAGAAATTCAAATTT 470 |||||||||||| |||||||||||| ||| Sbjct 593 TTGATGTTAGGTTTGAGAAATTCAAGTTT 621 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47320566474 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5