BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922213
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-... 331 7e-90
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 318 5e-86
AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-... 75.0 1e-12
> AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-11095649
FORWARD LENGTH=936
Length=936
Score = 331 bits (179), Expect = 7e-90
Identities = 368/454 (81%), Gaps = 33/454 (7%)
Strand=Plus/Plus
Query 530 TAAACTAGGTGTGATTAATTTGGAGGATGATTATTATGGAGGATTT-TCCCTTAAGTTAC 588
|||||||||||||||||||||||||||||||||| |||| |||| | ||| |||||||||
Sbjct 477 TAAACTAGGTGTGATTAATTTGGAGGATGATTATGATGGTGGATATCTCC-TTAAGTTAC 535
Query 589 GTATGTGGGTTCTAGAGAATGTCGAGAAACATGAA-TGGAGTACATATG-CCTACACATT 646
|||||| ||||||||| || |||||||||| ||| |||| |||||||| || |||| ||
Sbjct 536 GTATGTTTGTTCTAGAGGATTTCGAGAAACA-GAAATGGACTACATATGTCC-ACACTTT 593
Query 647 GAGGGCTGAGAATAAAGTCGTTAAGGTTAGTCAAAATCTGTCCGTTATTGGAGTGACTGG 706
||||| |||||||||| || |||| | | | ||| | | ||| |||| | ||||
Sbjct 594 GAGGGATGAGAATAAAATC---AAGGACAATGACAATGTTTATGTTGTTGGGGCAACTGC 650
Query 707 TTCGGGTGACATTGTTTTGGCGAACCATAATTTATATAAACCGATTTATGT-TTTCTACT 765
||| ||| | ||||||||||||| |||| |||||||||| ||||||| ||| ||||
Sbjct 651 TTCAGGTCAAATTGTTTTGGCGAGGAATAAGGCATATAAACCGTTTTATGTGTTT-TACT 709
Query 766 TTAATCCCGAAAGGAACACTCTCCTATGTGTTGAAATCCAAGGTGTTAGGGAAGAGGAAG 825
|||||||||||| || |||||| | | |||||||||||||||||||||| ||||| ||||
Sbjct 710 TTAATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAAG 769
Query 826 AATGGTTTAAAAATCATAAAGTTTACTGCTTTGTAAACCATGTAGAGGATCTTAGATTTG 885
| |||||| |||| |||||||| ||||||| ||||||| ||||||||||| ||||
Sbjct 770 ATTGGTTT------CATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTG 823
Query 886 ATGTTATGAAGACAACAT---CT--A---T--A-A-GCCCACCAGAACAGAGCACATCAA 933
|||||||||||||||||| || | | | | | ||| ||||||||| ||||||||
Sbjct 824 ATGTTATGAAGACAACATATGCTGCAACATCGATAAGACCAGCAGAACAGAACACATCAA 883
Query 934 CATCATCTATCTAGAGAAGCTCATCAAGTGAGGA 967
||||||||| |||||| ||||| ||||||||
Sbjct 884 CATCATCTA----GAGAAGATCATCTAGTGAGGA 913
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 318 bits (172), Expect = 5e-86
Identities = 296/355 (83%), Gaps = 12/355 (3%)
Strand=Plus/Plus
Query 1 TAGTAGCCACCGATTTTCATATGAAGTTTTCTGAAGACACAA--CCATATACTA-TCGTA 57
|||||||| |||||||||||||||| || || |||||| || ||| | || | | |||
Sbjct 315 TAGTAGCCGCCGATTTTCATATGAAATTCTCCAAAGACATAAGCCCA-A-AC-AGTTGTA 371
Query 58 GCTATGCTTCTGGTTTGATATATTTCCCTAACATGCGGATCTCAAACGAGAATGACGATG 117
| ||||||||| |||||||||||||||||| || | ||||||||| ||| |||||||
Sbjct 372 GTTATGCTTCTAGTTTGATATATTTCCCTATTATCCAGATCTCAAAGGAGTGGGACGATG 431
Query 118 TAGTGCGTATGATATGTAACCCTAGCACGGGACAGTATGCAATCTTACCACTTGACTTGA 177
||||||| ||||||||||||||||||| |||| ||||| |||||||||| |||| | |
Sbjct 432 AAGTGCGTGCGATATGTAACCCTAGCACGAGACAATATGCGATCTTACCACCTGACCTCA 491
Query 178 GAACAGGGTACCAAGACGTAGG-CGGCTTTTTAGGGTTTGATCCGATTGGCAAGCAATTC 236
||||| ||||||| || | || | | ||||||| ||||||||||||||||||||||||
Sbjct 492 GAACAACGTACCAAAACTTCGGTC-CCCTTTTAGGATTTGATCCGATTGGCAAGCAATTC 550
Query 237 AAGGTTTTGGTCTTTAAAC-GTAGAGTCG-ATGATAAATTGGTTTATCATATTATGATAT 294
|||||| | ||||| || | ||||||||| | || ||||||||||||||||| ||| ||
Sbjct 551 AAGGTTCTAGTCTTCAA-CTGTAGAGTCGGAA-ATGAATTGGTTTATCATATTTTGACAT 608
Query 295 TAGGAACAGAAAATATGAGGTGGAGGGAGAACATATGTCCCTTAACCTATGGACC 349
||||||| |||||| |||||||||| |||| |||||||||||| ||||||| |||
Sbjct 609 TAGGAACTGAAAATGTGAGGTGGAGAGAGATCATATGTCCCTTTACCTATGAACC 663
> AT1G67130.1 | Symbols: | F-box family protein | chr1:25099262-25100625
REVERSE LENGTH=1176
Length=1176
Score = 75.0 bits (40), Expect = 1e-12
Identities = 198/269 (74%), Gaps = 31/269 (12%)
Strand=Plus/Plus
Query 210 GGGTTTGATCCGATTGGCAAGCAATTCAAGGTTTTGGT-CTTTAAACGTAGAGTCGATGA 268
|||||||| ||||||||||||||||||||||||||||| ||| || | | || | ||
Sbjct 376 GGGTTTGACCCGATTGGCAAGCAATTCAAGGTTTTGGTTCTT-AA-CAT----TCTA-GA 428
Query 269 TAAATTGGTTTATCATATTATGATATTAGGAACAGAAAAT-ATGAGGTGGAGGGAGAA-C 326
|| | || || || | ||| |||||||||||||||| || || |||||| || | |
Sbjct 429 CAA-TCA-TT-AT-AT-TC-TGACATTAGGAACAGAAAATGATAAG-TGGAGG-AGTATC 480
Query 327 -ATATGTCCCTTAACCTATGGACCCTATGGTTATCGTTGGGAACATATATGTATTAATGG 385
| | || |||||| ||| | || | ||| | | | | ||| | ||||||||
Sbjct 481 CAAA-GTTCCTTAAGGTATCGTCCTTGTGGGCAAAGCCCG-A---TAT--GCATTAATGG 533
Query 386 TGTCTTGTATTACATAGCTG-CTGACCCTGATAA-AGAGC-A-TGATATGATAGGTTGTT 441
|| ||||||||||||||| | || | | | || | | |||| ||||||||||||
Sbjct 534 AGTTTTGTATTACATAGCTTAC-GATACACAGGACAGCTCGAATGATGTGATAGGTTGTT 592
Query 442 TTGATGTTAGGTCTGAGAAATTCAAATTT 470
|||||||||||| |||||||||||| |||
Sbjct 593 TTGATGTTAGGTTTGAGAAATTCAAGTTT 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5