BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922214
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 684 0.0
AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-... 523 1e-147
AT1G30921.1 | Symbols: | pseudogene, hypothetical protein | ch... 327 9e-89
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 243 3e-63
AT1G33010.1 | Symbols: | F-box and associated interaction doma... 180 3e-44
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 145 1e-33
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 139 4e-32
AT5G38810.1 | Symbols: | F-box and associated interaction doma... 87.9 2e-16
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 58.4 1e-07
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 684 bits (370), Expect = 0.0
Identities = 667/799 (83%), Gaps = 65/799 (8%)
Strand=Plus/Plus
Query 187 GTAGAGTCGATGG-TGAATTGTTTTATCAAATTCTAACATTAGGAACTGAAAATATGAGG 245
||||||| || || ||||| | ||||||| ||||| |||||||||||||||||| |||||
Sbjct 293 GTAGAGTTGA-GGATGAATGGGTTTATCATATTCTGACATTAGGAACTGAAAATGTGAGG 351
Query 246 TGGAGGGAGATCGA-ATTTCCCTCCTTC-TCTGGTCTTGTTTC-GG-AAA--TGATATGC 299
||||||||||| | || ||||| ||| | || || | || || ||| |||||||
Sbjct 352 TGGAGGGAGAT-TATATGTCCCT-TTTCATATGATCCT-CCTCGGGAAAAGCCGATATGC 408
Query 300 ATCAATGGGGTTTTGTATTACATTAA---TC---A--TA--A--AAC-TATAGGTTGCTT 346
|||||||||||||||||||||| ||| || | || | || ||||||||||||
Sbjct 409 ATCAATGGGGTTTTGTATTACA-TAAGTGTCGGTAGTTATTATTCACTTATAGGTTGCTT 467
Query 347 TGATGTTAGGTCTGAGAAATTCAAGTTTCTAAATCAAAACCCAGACTGCCTTACTAGTTG 406
|||||||||||||||||||||||||||| || ||| || |||||| ||| || | | ||
Sbjct 468 TGATGTTAGGTCTGAGAAATTCAAGTTTTTATATCTAAGCCCAGATTGCTTTCCAAACTG 527
Query 407 GTCTACTAAAA-TGATAAACTATAAGGGTAAATTTGGTGTTA-T-TAATTTGGAAGATAA 463
||||| |||| |||||||||||||||||||||| ||||| | | ||| |||||||| |
Sbjct 528 GTCTA-GAAAATTGATAAACTATAAGGGTAAATTAGGTGTGACTATAA--TGGAAGATTA 584
Query 464 TTATGCTCGTGGATTTCCCCTTAAGTTGCGTATATGGGTTCTAGACAATGTCGAGAAACA 523
| ||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 585 TCATG---GTGGATTTCCCCTTAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGA 641
Query 524 AGAATGGACGACATATGCCTACACTTTGAGGGCTGAGAATATAGTCAAGGATAAAAG-CT 582
|||||||||| ||||||||||||||||||| ||||||||| |||| |||| || | ||
Sbjct 642 GGAATGGACGAGATATGCCTACACTTTGAGGCCTGAGAATAAAGTCGAGGA-CAATGACT 700
Query 583 ATATTTATGTTGTTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGC-AAAAATGAATGCA 641
|| | ||||||||||||| |||||||||||||||||||||||| | ||| | |||||||
Sbjct 701 ATGTATATGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGACGAAACA-GAATGCA 759
Query 642 TATAAACCGTTTTATGTTTTTTACTTTAATCCCGAAAAGAACACTCTCCAAAGTGTTGAA 701
|||||||||||||||||||| ||||||| ||| |||| ||||||||||| ||| ||||||
Sbjct 760 TATAAACCGTTTTATGTTTTCTACTTTAGTCCTGAAAGGAACACTCTCCTAAGCGTTGAA 819
Query 702 ATCCAAGGTGTTAGAGAAGAAGATGAATGGTTTTACGATCATAGA-GTTTACTACTTTGT 760
|||||||||||| | | || | | |||||||||| |||||| | ||||||||||||||
Sbjct 820 ATCCAAGGTGTT-G-G-AG-A-A-GAATGGTTTT---ATCATA-ATGTTTACTACTTTGT 869
Query 761 AGACCATGTCGAGGATCTTAGGTTTGATGTTATGAAGACAACGTATGCTGCAACATCGAT 820
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 870 AGACCATGTCGAGGATCTTAGGTTTGATGTTATGAAGACAACATATGCTGGAACATCTAG 929
Query 821 AAGCCCACCAGAACATAACACATCAACATCATCTAGAGAAGATCATCAAGTGAGGACCGT 880
|||||||||| |||| | |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 930 AAGCCCACCAAAACAGAGCACATCAACATCATCTAGAGAAGATCATGAAGTGAGGACCCT 989
Query 881 TGCTCA------------TCGTCATA-GATTTGAGAGCGTTAACAAATTTGATGCAT-TG 926
|||||| ||||| || | |||||||| |||||| |||||||||| | ||
Sbjct 990 TGCTCACCAGAAAGAAGATCGTCTTACG-TTTGAGAGTGTTAACCAATTTGATGC-TCTG 1047
Query 927 TGTCTTTTAGAAGATGATT 945
||||||||||||||||||
Sbjct 1048 CGTCTTTTAGAAGATGATT 1066
> AT1G31090.1 | Symbols: | F-box family protein | chr1:11094407-11095649
FORWARD LENGTH=936
Length=936
Score = 523 bits (283), Expect = 1e-147
Identities = 398/452 (88%), Gaps = 14/452 (3%)
Strand=Plus/Plus
Query 434 TAAATTTGGTGTTATTAATTTGGAAGATAATTATGCTCGTGGATTTCCCCTTAAGTTGCG 493
|||| | ||||| ||||||||||| ||| |||||| | |||||| || ||||||||| ||
Sbjct 477 TAAACTAGGTGTGATTAATTTGGAGGATGATTATGATGGTGGATATCTCCTTAAGTTACG 536
Query 494 TATATGGGTTCTAGACAATGTCGAGAAACAAG-AATGGACGACATATG-CCTACACTTTG 551
||| | |||||||| || ||||||||| || ||||||| ||||||| || ||||||||
Sbjct 537 TATGTTTGTTCTAGAGGATTTCGAGAAAC-AGAAATGGACTACATATGTCC-ACACTTTG 594
Query 552 AGGGCTGAGAATATAGTCAAGGATAAAAG-CTATATTTATGTTGTTGGGGTGACTGCTTC 610
|||| |||||||| | ||||||| || | | || ||||||||||||||| ||||||||
Sbjct 595 AGGGATGAGAATAAAATCAAGGA-CAATGACAATGTTTATGTTGTTGGGGCAACTGCTTC 653
Query 611 AGGTGAAATTGTTTTGGC-AAAAATGAATGCATATAAACCGTTTTATGTTTTTTACTTTA 669
|||| ||||||||||||| | ||| || |||||||||||||||||||| ||||||||||
Sbjct 654 AGGTCAAATTGTTTTGGCGAGGAAT-AAGGCATATAAACCGTTTTATGTGTTTTACTTTA 712
Query 670 ATCCCGAAAAGAACACTCTCCAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGATGAAT 729
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 713 ATCCCGAAAAGAGCACTCTACAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAAGATT 772
Query 730 GGTTTTACGATCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTGATG 789
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GG--TT----TCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTTAGGTTTGATG 826
Query 790 TTATGAAGACAACGTATGCTGCAACATCGATAAGCCCACCAGAACATAACACATCAACAT 849
||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct 827 TTATGAAGACAACATATGCTGCAACATCGATAAGACCAGCAGAACAGAACACATCAACAT 886
Query 850 CATCTAGAGAAGATCATCAAGTGAGGACCGTT 881
|||||||||||||||||| |||||||||||||
Sbjct 887 CATCTAGAGAAGATCATCTAGTGAGGACCGTT 918
> AT1G30921.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11007112-11008238 REVERSE LENGTH=1127
Length=1127
Score = 327 bits (177), Expect = 9e-89
Identities = 324/392 (83%), Gaps = 21/392 (5%)
Strand=Plus/Plus
Query 409 CTACTAAAATGATAAACTATAAGGGTAAATTTGGTGTT-ATTAATTTGGAAG-ATAATTA 466
||| |||| |||||||||||||||||||||| ||| || || |||||| || | ||||
Sbjct 745 CTA-TAAATTGATAAACTATAAGGGTAAATTAGGT-TTGGTTGATTTGG-AGAAGGATTA 801
Query 467 TGCTCG-TGGATTTCCCCTTAAGTTGCGTATATGGGTTCTAGACAATGTCGAGAAACAAG 525
|| | | ||||| || |||| ||| ||||| ||||||||| ||||||||||| |
Sbjct 802 TGAT-GCTGGATATCTCCTTGGGTTACGTATGCAGGTTCTAGAGGATGTCGAGAAAGGGG 860
Query 526 AATGGACGACATATGCCTACACTTTGAGGGC---TGAGAATATAGTCAAGGATAA-AAGC 581
||| || || ||||||||||||| ||||||| |||||||| |||| ||| || |
Sbjct 861 AATAGAAGAAATATGCCTACACTGTGAGGGCTGATGAGAATAAAGTC---TTTAACAA-C 916
Query 582 TATATTTATGTTGTTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGC-AAAAATGAATGC 640
|| ||| |||||||||| |||||||||||||||||||||||||| || ||| ||||
Sbjct 917 AATCTTTCCGTTGTTGGGGCAACTGCTTCAGGTGAAATTGTTTTGGCGAAGAAT-TATGC 975
Query 641 ATATAAACCGTTTTATGTTTTTTACTTTAATCCCGAAAAGAACACTCTCCAAAGTGTTGA 700
||| ||||||||||||||||| || ||||||||||| | ||||||||||| |||||||||
Sbjct 976 ATAGAAACCGTTTTATGTTTTCTAATTTAATCCCGATAGGAACACTCTCCGAAGTGTTGA 1035
Query 701 AATCCAAGGTGTTAGAGAAGAAGATGAATGGTTTTACGATCATAGAGTT--T-ACT-ACT 756
||||||||||||||||||||| || ||||||||| ||||||||| |||| | | | |||
Sbjct 1036 AATCCAAGGTGTTAGAGAAGAGGAAGAATGGTTTGACGATCATACAGTTCATTAATTACT 1095
Query 757 TTGTAGACCATGTCGAGGATCTTAGGTTTGAT 788
||||||||||||| ||||||||||||||||||
Sbjct 1096 TTGTAGACCATGTAGAGGATCTTAGGTTTGAT 1127
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 243 bits (131), Expect = 3e-63
Identities = 384/499 (77%), Gaps = 45/499 (9%)
Strand=Plus/Plus
Query 337 TAGGTTGCTTTGATGTTAGGTCTGAGAAATTCAAGTTTCTAAATCAAAACCCAGACTGCC 396
||| |||||||||||||||||||||||| || ||||||| || ||| || |||| |
Sbjct 704 TAGTTTGCTTTGATGTTAGGTCTGAGAATTTTGTGTTTCTACGTCTTAACACATACTG-C 762
Query 397 TTACTAGTTGGTCTACTAAAATGATAAACTATAAGGGTAAATTTGGTGTTATTAATTTGG 456
| | | ||||||||| || ||||||||||||||||||| || | ||||| |
Sbjct 763 -T-C----T--TCTACTAAATTGGTAAACTATAAGGGTAAATTAGGCATGATTAA--T-C 811
Query 457 AAGA-TA-ATT-ATGCTCGTGGATTTCCCCTTAAGTTGCGTATATGGGTTCTAGACAATG 513
|||| || || ||| | |||| |||||||| ||||| || | ||||||||||| |||
Sbjct 812 AAGAGTATGTTGATGATGGTGGTTTTCCCCTAAAGTTAAGTGTGTGGGTTCTAGAGGATG 871
Query 514 TC-GAGAAACAAGAATGGACGACATATGCCTACACTTTGAGGGCTGAGAATATAGTC-A- 570
|| || ||| |||||||| ||||||||| |||||||||||||| ||| |||| |||| |
Sbjct 872 TCGGA-AAAGAAGAATGGTCGACATATGTCTACACTTTGAGGGATGATAATAAAGTCGAT 930
Query 571 -AGGATAAAAGCTAT-AT-T-TATGTTGTTGGGGTGACTGCTTCAGGTGAAATTGTTTTG 626
||| | ||| ||| || | | ||||||||||||||||||||||||||||||||||||
Sbjct 931 CAGG-TTAAA--TATAATCTCTCCGTTGTTGGGGTGACTGCTTCAGGTGAAATTGTTTTG 987
Query 627 GC-AA-AA-A-TGAATGCA-TATAAACCGTTTTATGTTTTTTACTTTAATCCCGA-AAAG 680
| || || | | || || | ||| || ||||||||||| |||||||| ||||| |||
Sbjct 988 GTGAAGAAGACTCAAA-CACT-TAAGCCATTTTATGTTTTATACTTTAACCCCGACAAA- 1044
Query 681 AACACTCTCCAAAGTGTTGAAATCCAAGGTGTTAGAGAAGAAGAT-GAATGGTTTTACGA 739
|| |||||| || ||||||| || |||| | | | | ||| | ||| | || |
Sbjct 1045 AATACTCTCTTAACTGTTGAAGTCAAAGGACT-ACACCGGG-GATTGTATGCCGT-AC-A 1100
Query 740 TCATAGAGTTTACTACTTTGTAGACCATGTCGAGGATCTT-AGGTTTGATGTTATGAAGA 798
|| | | ||||| ||||||||||||||| ||||||||| || ||| || |||||||||
Sbjct 1101 -CAGA-A-TTTACGCCTTTGTAGACCATGTAGAGGATCTTGAG-TTTAATATTATGAAGA 1156
Query 799 CAACGTATGCTGCAACATC 817
|||| |||||||||| |||
Sbjct 1157 CAACATATGCTGCAAAATC 1175
> AT1G33010.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11959287-11960591 FORWARD LENGTH=1086
Length=1086
Score = 180 bits (97), Expect = 3e-44
Identities = 326/430 (76%), Gaps = 42/430 (10%)
Strand=Plus/Plus
Query 418 TGATAAACTATAAGGGTAAATTTGGTGTTATTAATTTGGAAGATAATTATGCTCGTGGAT 477
|||||||||||||||||||||| |||| ||| | |||| | ||||| ||| || |
Sbjct 542 TGATAAACTATAAGGGTAAATTAGGTGGGATT-AGTTGG-A-ATAATCATG-AGGTTG-- 595
Query 478 TTCCCCTTAAGTTG-CGTATATGGGTTCTAGACA-ATGTCGAGAAACAAGAATGGACGAC 535
|||| || ||||| | ||| ||||||||||| | |||||||||||||||||||| | |
Sbjct 596 CTCCCGTTGAGTTGTC-TATGTGGGTTCTAGA-AGATGTCGAGAAACAAGAATGGTCCAA 653
Query 536 ATATGCCTACACTTTGAGGGCTGAGAATATAGTCAAGGATAA-AAGCTATATT-TATGTT 593
| ||| ||||| ||| | || ||||| ||||| ||| || || || | | |
Sbjct 654 AAATGTCTACA-TTT--TGCCTAAGAATGTAGTC---CCTAATAA-CT-GGTTGCACGCT 705
Query 594 GTTGGGGTGACTGCTT-CAGGTGAAATTGTTTTGGC-AAAAATGAATGCATATAAACCGT 651
| ||| ||||||| || |||||| |||||||| | | || | | || || ||||
Sbjct 706 GCTGGAGTGACTG-TTGAAGGTGATATTGTTTTCTCGGAGGCTGTA-GTATCCAATCCGT 763
Query 652 TTTATGTTTTTTACTTTAATCCCGAAAAGAACACTCTCCAA-AGTGTTGAAATCCAAGGT 710
|| ||||||| |||||||||||||||||||||||||||||| | ||||||| ||| |
Sbjct 764 TTGATGTTTTCTACTTTAATCCCGAAAAGAACACTCTCCAACAC-GTTGAAACCCAT--T 820
Query 711 GTTAGAGAA-GAAGATGAATG--GTTTTACGA-TCATAGAGTTTAC-TACTTTGTAGACC 765
|| | | | |||| || || | | | || || ||| || || | |||||||||||
Sbjct 821 GT-A-ACCATGAAG-TGTTTGACGATG-A-GAATC-TAG--TTAACAT-CTTTGTAGACC 871
Query 766 ATGTCGAGGATCTTAGGTTTGATGTTATGAAGACAACGTATGCTGCAACATCGATAAGCC 825
|||| |||||||||| |||||||||||||||| |||| |||||||||||||| ||| |||
Sbjct 872 ATGTAGAGGATCTTAAGTTTGATGTTATGAAGCCAACATATGCTGCAACATCTATACGCC 931
Query 826 CACCAGAACA 835
|| |||||||
Sbjct 932 CAACAGAACA 941
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 145 bits (78), Expect = 1e-33
Identities = 242/318 (76%), Gaps = 24/318 (8%)
Strand=Plus/Plus
Query 418 TGATAAACTATAAGGGTAAATT-TGGTGTTATTAATTTGGA--A-GATAATTATGCTCGT 473
|||||||||||||||| ||||| || || ||||||||||| | | || ||| | ||
Sbjct 746 TGATAAACTATAAGGGGAAATTATG-TGGGATTAATTTGGAGTATGCTAGGCATGTTGGT 804
Query 474 GGATTTCCCCTTAAGTTGCGTATATGGGTTCTAGACAATGTCGAGAAACAAGAATGGACG 533
|||||||| |||||||| |||| |||||| |||| |||||||||||| |||||| ||
Sbjct 805 GGATTTCCTGTTAAGTTGAGTATGTGGGTTTTAGAGGATGTCGAGAAACCGGAATGGTCG 864
Query 534 ACATATGCCTACACTTTGAGGGCTGAGAAT-ATAGTC---AAGGATAAAAGCTATATTTA 589
| | ||| |||| ||||| || | |||| | | |||| |||| ||| | || |||
Sbjct 865 AAACATGTCTACTCTTTGTGGACGGAGAGTGA-AGTCGTTAAGGTTAACCGGAATCTTTC 923
Query 590 TGTTGT-TGGGGTGACTGCTTCAGGTGAAATTGTTTTGGCAAA--AATGAATGCATA-TA 645
|||| | |||| ||||||| | ||||| |||||||| | | || || |||| | ||
Sbjct 924 TGTT-TCTGGGATGACTGCAACCGGTGACATTGTTTTATCGATGGAA-GA-TGCA-ACTA 979
Query 646 AACCGTTTTATGTTTTTTACTTTAATCCCGAAAAGAACACTCTCCAA----A--GTGTTG 699
| |||||||||||||| |||| ||||| || | ||||||||||||| | ||||||
Sbjct 980 ATCCGTTTTATGTTTTCAACTTCAATCCGGATAGGAACACTCTCCAAGTCCAAAGTGTTG 1039
Query 700 AAATCCAAGGTGTTAGAG 717
||||||||||| || |||
Sbjct 1040 AAATCCAAGGTCTTGGAG 1057
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 139 bits (75), Expect = 4e-32
Identities = 277/368 (75%), Gaps = 39/368 (11%)
Strand=Plus/Plus
Query 336 ATAGGTTGCTTT-GATGTTAGGTCTGAGAAATTCAAGTTTCTAAATCAAAACC-CA-GAC 392
|||| || |||| ||| ||||||||||||||||||| ||| || |||| | || | |
Sbjct 79 ATAGTTT-CTTTTGATTTTAGGTCTGAGAAATTCAA-TTT-TA--TCAATGCATCAAG-C 132
Query 393 TGCCTTACTAGTTGGTCTACTAAAAT-GATAAACTATAAGGGTAAATTTGGTGTTATTAA 451
| |||| | || ||||| ||||| ||||||||| || |||||||| |||| ||| |
Sbjct 133 TTCCTTT-T--TTCATCTAC-AAAATTGATAAACTACAAAGGTAAATTAGGTGGGATTGA 188
Query 452 TTTGGAAG-ATAATTATGCTCGTGGATTTCCCCTTAAGTTGCGTATATGGGTTCTAGACA 510
||||| | ||||| ||| | ||| || |||| || |||| ||||| |||||||||||
Sbjct 189 TTTGGC-GTATAATCATGGTGGTGTATATCCCGTTGAGTTACGTATGTGGGTTCTAGAGG 247
Query 511 ATGTCGAGAAACAAGAATGGACGACATATGCCTACACTTTGA-GG-G-C--TGAGAATAT 565
||||||||||||| |||||| ||| | ||| ||| ||||| || | | | |||| |
Sbjct 248 ATGTCGAGAAACACGAATGGTCGAGACATGTTTACTCTTTGCCGGAGACCATT-GAATTT 306
Query 566 -AGTCAAG-GATAAA-AGCTATATTTATGTTGTTGGGGTGACTGCT-TCAGGTGAAATTG 621
|| || | | ||| | | |||||| |||| |||| ||| |||| | |||||||||||
Sbjct 307 CAG-CA-GTG-TAACTA-CAATATTTGCGTTGGTGGGATGAATGCTAT-AGGTGAAATTG 361
Query 622 TTTT---GG---CAAAAATGAA-TGCATATAAACCGTTTTATGTTTTTTACTTTAATCCC 674
|||| || || | || | | ||| ||||||||||||||||| ||||| ||||||
Sbjct 362 TTTTTTCGGAGTCATATAT-ATCTACATCCAAACCGTTTTATGTTTTCTACTTCAATCCC 420
Query 675 GAAAAGAA 682
||||||||
Sbjct 421 GAAAAGAA 428
> AT5G38810.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:15540484-15541540 REVERSE LENGTH=780
Length=780
Score = 87.9 bits (47), Expect = 2e-16
Identities = 155/204 (76%), Gaps = 19/204 (9%)
Strand=Plus/Plus
Query 334 CTA-TAGGTTGCTTTGATGTTAGGTCTGAGAAATTCAAGTTTCTAAATCAAAACCCAGAC 392
||| ||| || |||| |||||||||||||||||||||||||||| || ||| ||||
Sbjct 436 CTAGTAGTTTCCTTTAATGTTAGGTCTGAGAAATTCAAGTTTCTTGATGGAAA---AGAC 492
Query 393 TGCCTTACTAGTTGGTCTACTA-A-AATG-ATAAACTATAAGGGTAAATTTGGTGTTATT 449
| | | ||| || || | || | ||| |||||||| ||||||||||| ||||| | |
Sbjct 493 TTC-T--CTAATTT-TC-A-TAGAGAATTTATAAACTACAAGGGTAAATTAGGTGTGACT 546
Query 450 AATTTGGAAGATAATTATGCTCGTG--G-ATTTCCCCTTAAGTTGCGTATATGGGTTCTA 506
|| ||||| | | | ||||| ||| | | ||||| | ||||| || | |||||||||
Sbjct 547 AAATTGGA-G-TG-TGATGCTGGTGATGGACATCCCCGTGAGTTGTGTGTGTGGGTTCTA 603
Query 507 GACAATGTCGAGAAACAAGAATGG 530
|| |||| |||||||| ||||||
Sbjct 604 GAGGATGTTGAGAAACAGGAATGG 627
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 58.4 bits (31), Expect = 1e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 336 ATAGGTTGCTTTGATGTTAGGTCTGAGAAATTCA 369
|||| |||||||||||||||||||||||||||||
Sbjct 664 ATAGTTTGCTTTGATGTTAGGTCTGAGAAATTCA 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5