BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922215
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30940.1 | Symbols: | pseudogene, F-box protein -related, c... 416 2e-115
AT1G30935.1 | Symbols: | pseudogene, F-box protein family, con... 412 2e-114
AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-... 394 8e-109
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 289 4e-77
AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-... 267 2e-70
AT1G33020.1 | Symbols: | F-box and associated interaction doma... 239 4e-62
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 169 6e-41
> AT1G30940.1 | Symbols: | pseudogene, F-box protein -related,
contains TIGRfam:TIGR01640 F-box protein interaction domain
| chr1:11021984-11023320 REVERSE LENGTH=1337
Length=1337
Score = 416 bits (225), Expect = 2e-115
Identities = 488/608 (80%), Gaps = 46/608 (8%)
Strand=Plus/Plus
Query 185 ATTCGTATAGCTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTATTGTTCATGA 244
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 422 ATTCGTATAGCTATTTAGGGTTTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGA 481
Query 245 ATACTAGTAAAT-TTATAGCTT-CTAGTGATATAGATCATTATATTTTGACACTAGGAAC 302
|||| || ||| |||||||| || ||| |||||||||||||| ||||| | |||||
Sbjct 482 CTACTCGT-AATAATATAGCTTGGAAG-GATCTAGATCATTATATTCTGACATTGGGAAC 539
Query 303 TGGGAAATTGAGGTGGAGGAAGATCCAATGTCCTTTTACCCATAACCCT-TTTTGGAATA 361
|||| |||||| ||||||| ||||| |||| ||||||||||| | ||| | | |||| |
Sbjct 540 TGGGGAATTGAAATGGAGGAGGATCCGATGTGCTTTTACCCATGAGCCTGTGTGGGAA-A 598
Query 362 GGATTTGCATCAATGGGGTTTTGTATTACTTAGC--T-CATTCTGAAAGAAAGTATTATG 418
||||||| |||||||| ||||||||||||| ||| | |||||| | | || ||||||
Sbjct 599 GGATTTGTATCAATGGAGTTTTGTATTACTCAGCTATGAATTCTG-ATGGAA--ATTATG 655
Query 419 CGGTAGTTTGCTTTGATGTTAGATCTGAGAAATTCAAGCTCGTTGAACTACACCGTTTG- 477
| ||||||| ||||||||| | | ||||||||||||| || || | ||
Sbjct 656 TGATAGTTTGTTTTGATGTT--A--T------TTCAAGCTCGTTG-AC-GCA--GAATGC 701
Query 478 -GATTGCT-GTCTTT-ATGGACTGATAAACTATAAGGGGAAATTATGTGGGGTTAATTTG 534
| || || | ||| ||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct 702 CG-TT-CTAG-ATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGATTATTTTG 758
Query 535 AAGTATGCT--TC-TGATGGTGGATTTCCCCTTGAGTT-ACGTATGTGGGTTCTAGAGGA 590
|||||||| || ||||||||||| | || || |||| | ||||||||||| |||||||
Sbjct 759 GAGTATGCTAGTCATGATGGTGGATCTACCGTTAAGTTGA-GTATGTGGGTTTTAGAGGA 817
Query 591 TGTCGAGAAAGAGGAATGGACGACATATGCCTACACTTTGAGGGATG-AGAATAAACTCG 649
|||||||||| ||||||| ||| | ||| |||| | ||| || | | ||| | || |||
Sbjct 818 TGTCGAGAAACCGGAATGGTCGAAACATGTCTACTCGTTGTGG-ACGGAGAGTCAAGTCG 876
Query 650 TTAAGGTTAACTACAATCTTTCCGTTGCTGGGGTGACTGCTTCAGGTGAAATTGTTTTGG 709
||||||||||| | |||||||| ||| ||||| |||||||| | ||||| |||||||||
Sbjct 877 TTAAGGTTAACCATAATCTTTCTGTTTCTGGGATGACTGCTACCGGTGACATTGTTTTG- 935
Query 710 TGGACCATAATA--CATGTAAACCGTTCTATGTTTTCTACTTTAATCCCA-AAAGGAACA 766
| ||| | |||| ||| | | ||||| |||||||||||||| ||||| | ||||||| |
Sbjct 936 TCGACAA-AATATGCATCTCAGCCGTTTTATGTTTTCTACTTCAATCC-AGAAAGGAAAA 993
Query 767 CTCTCCAA 774
|||| |||
Sbjct 994 CTCTGCAA 1001
> AT1G30935.1 | Symbols: | pseudogene, F-box protein family, contains
F-box domain Pfam:PF00646 | chr1:11017436-11018990 REVERSE
LENGTH=1555
Length=1555
Score = 412 bits (223), Expect = 2e-114
Identities = 514/647 (79%), Gaps = 49/647 (8%)
Strand=Plus/Plus
Query 186 TTCGTATAGCTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTATTGTTCATGAA 245
||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
Sbjct 435 TTCGTATAGCTATTTAGGGTTTGATCCGATTGATAAGGAATTCAAGGTATTGTTCATGGA 494
Query 246 TACTAGTAAATTTATAGCTTC-TAGTGAT-ATAGATCATTATATTTTGACACTAGGAACT 303
|||| || | ||||||||||| || ||| | ||||||||||||||||||| | ||||||
Sbjct 495 TACTTGTGATTTTATAGCTTCGAAG-GATGA-AGATCATTATATTTTGACATTGGGAACT 552
Query 304 GGGA-AATTGAGGTGGAGGAAGATCCAATGTCCTTTTACCCATAACCCTTTTTGGAATAG 362
||| |||||| ||||||||||||||||||||||||||| ||| | ||||||||| | ||
Sbjct 553 -GGAGAATTGAAGTGGAGGAAGATCCAATGTCCTTTTACACATGAGCCTTTTTGGGAGAG 611
Query 363 GATTTGCATCAATGGGGTTTTGTATTACT-TAGC-T-C-ATTCTGA----AA--GAAAGT 412
||| ||||| ||||||||||||||||||| | || | | ||||||| || ||| ||
Sbjct 612 GATATGCATTAATGGGGTTTTGTATTACTCT-GCTTACTATTCTGATTCTAATGGAAGGT 670
Query 413 ATTATGC-GGTAGTTTGCTTTGATGTTAGATCTGAGAAATTCAAGCTCGTTG-AACTACA 470
| || | ||| ||||||||||||||| |||||||||||||| || | | || | |
Sbjct 671 CTCAT-CTCATAGCTTGCTTTGATGTTAGGTCTGAGAAATTCAATTTCATAGCCAC-AAA 728
Query 471 CCGTTTGGATTGCTGTCTTTATGGACTGATAAACTATAAGGGGAAATTATGTGGGGTTAA 530
| | || | | | | | | ||||||||||||||||||||||||||||| ||||
Sbjct 729 AC-ATCGG--TAC-G--ATCA--G-TTGATAAACTATAAGGGGAAATTATGTGGGATTAA 779
Query 531 TTTGAAGTATGCTT--C-TGATGGTGGATTTCCCCTTGAGTT-ACGTATGTGGGTTCTAG 586
|||| |||||||| | || |||||||||||| || |||| | ||||||||||| |||
Sbjct 780 TTTGGAGTATGCTAGGCATGTTGGTGGATTTCCTGTTAAGTTGA-GTATGTGGGTTTTAG 838
Query 587 AGGATGTCGAGAAAGAGGAATGGACGACATATGCCTACACTTTGAGGGATG-AGAATAAA 645
|||||||||||||| ||||||| ||| | ||| |||| ||||| || | | ||| | ||
Sbjct 839 AGGATGTCGAGAAACCGGAATGGTCGAAACATGTCTACTCTTTGTGG-ACGGAGAGTGAA 897
Query 646 CTCGTTAAGGTTAACTACAATCTTTCCGTTGCTGGGGTGACTGCTTCAGGTGAAATTGTT 705
|||||||||||||| |||||||| ||| ||||| ||||||| | ||||| ||||||
Sbjct 898 GTCGTTAAGGTTAACCGGAATCTTTCTGTTTCTGGGATGACTGCAACCGGTGACATTGTT 957
Query 706 TTG--G-TGGACCATAATACATGTAAACCGTTCTATGTTTTCTACTTTAATCCCAAAAGG 762
|| | |||| | | | || ||| ||||| ||||||||| |||| ||||| | |||
Sbjct 958 TTATCGATGGA--AGA-TGCAACTAATCCGTTTTATGTTTTCAACTTCAATCCGGATAGG 1014
Query 763 AACACTCTCCAA----A--GTGTTGAAATCAAATTTTTTGGAGCTAA 803
|||||||||||| | ||||||||||| || | ||||||||||
Sbjct 1015 AACACTCTCCAAGTCCAAAGTGTTGAAATCCAAGGTCTTGGAGCTAA 1061
> AT1G30930.1 | Symbols: | F-box family protein | chr1:11014783-11015913
REVERSE LENGTH=1131
Length=1131
Score = 394 bits (213), Expect = 8e-109
Identities = 502/632 (79%), Gaps = 58/632 (9%)
Strand=Plus/Plus
Query 189 GTATAGCTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTATTGTTCATGAATAC 248
||||||||||||||||||||||||| | || |||||||||||||||||||||||| | |
Sbjct 438 GTATAGCTATTTAGGGTTTGATCCAGTTGATAAGGAATTCAAGGTATTGTTCATGGCTTC 497
Query 249 TAGTAAATTTATAGCTT-CTAGTGATATAGATCATTATATTTTGACACTAG-GAACTGGG 306
| || | || ||||| | || ||| |||||||||||||| ||||| | | ||||||||
Sbjct 498 TGGT---TATACAGCTTCCAAG-GATGTAGATCATTATATTCTGACA-TTGAGAACTGGG 552
Query 307 AAATTGAGGTGGAGGA-AGATCCAATGTCCTTTTACCCATAACCCTTTTTGGA-ATAGGA 364
|||||| ||||||| | ||||||||||||||||||||| | ||||| |||| | ||||
Sbjct 553 GAATTGAAATGGAGGACA-ATCCAATGTCCTTTTACCCATGAGCCTTTGTGGACA-AGGA 610
Query 365 TTTGCATCAATGGGGTTTTGTATTACTTAGC--T-CATTCTGAAAGAAAGTATTATGCGG 421
|||| |||||||| ||||||||||||| ||| | |||||| | | || |||||| |
Sbjct 611 TTTGTATCAATGGAGTTTTGTATTACTCAGCTATGAATTCTG-ATGGAA--ATTATGTGA 667
Query 422 TAGTTTGCTTTGATGTTAGATCTGAGAAATTCAAGCTCGTTGAACTACACCGTTTGGATT 481
||||||| ||||||||||||| ||||||||| |||||||||| || ||| | | | ||
Sbjct 668 TAGTTTGTTTTGATGTTAGATATGAGAAATTTAAGCTCGTTG-AC-ACAAAATGTCG-TT 724
Query 482 GCTGTCTTT-ATGGACTGATAAACTATAAGGGGAAATTATGTGGGGTTAATTTGAAGTAT 540
||| ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 725 -CTGAATTTAATGGATTGATAAACTATAAGGGGAAATTATGTGGGGTTAAGTTGAAGTAT 783
Query 541 GCTTCT-GATGGTGGATTTCCCCTTGAGTTACGTATGTGGGTTCTAGAGGATGTCGAGAA 599
|||| | | || |||||||||| || ||||||||||| | |||||||||||||| |||||
Sbjct 784 GCTTATCG-TGTTGGATTTCCCGTTAAGTTACGTATGCGAGTTCTAGAGGATGTTGAGAA 842
Query 600 AGAGGAATGGACGACATATGCCTACACTTTGAGGGATGAGAATAAACTCGTTAAGGTTAA 659
||| |||||| ||||||||| || | | | | ||| ||||||
Sbjct 843 AGATGAATGGTCGACATATGT-TA-A----G-G---T-----TAAG---GTTAAG----- 879
Query 660 CTACAATCTTTCCGTTGCTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGTGGACCATAA 719
| | |||||||||||||||||| |||||||| | ||||| ||||||||| | | | ||
Sbjct 880 C-AGAATCTTTCCGTTGCTGGGATGACTGCTACCGGTGACATTGTTTTGTTC-ATGA-AA 936
Query 720 TA--CATGTAAACCGTTCTATGTTTTCTACTTTAATCCCAAAAGGAACACTCTC-----C 772
| | | ||| ||||| |||||||||||||| ||||| |||||||| ||||| |
Sbjct 937 TTTGCGTCTAATCCGTTTTATGTTTTCTACTTCAATCCGGAAAGGAACTCTCTCGAAGTC 996
Query 773 -AAAGTGTTGAAATCAAATTTTTTGGAGCTAA 803
|||||||||||||| || | ||||||||||
Sbjct 997 CAAAGTGTTGAAATCCAAGGTCTTGGAGCTAA 1028
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 289 bits (156), Expect = 4e-77
Identities = 417/537 (78%), Gaps = 42/537 (8%)
Strand=Plus/Plus
Query 284 ATATTTTGACACTAGGAACTGGGAAAT-TGAGGTGGAGGAAGATCCA-ATGT-CCTTTTA 340
||||| ||||| |||||||| | |||| ||||||||||| |||| | |||| ||||||
Sbjct 320 ATATTCTGACATTAGGAACT-GAAAATGTGAGGTGGAGGGAGAT-TATATGTCCCTTTT- 376
Query 341 CCCATAACCCT-TTTTGGAATAG--GATTTGCATCAATGGGGTTTTGTATTAC-TTAGCT 396
| || | ||| | |||| || ||| |||||||||||||||||||||||| | || |
Sbjct 377 CATATGATCCTCCTCGGGAAAAGCCGATATGCATCAATGGGGTTTTGTATTACATAAG-T 435
Query 397 CATTCTGAAAGAAAGTATTATGC-GGTAGTTTGCTTTGATGTTAGATCTGAGAAATTCAA 455
|| | || | |||| | ||| ||||||||||||||| ||||||||||||||
Sbjct 436 --GTC-GGTAGTTATTATT-CACTTATAGGTTGCTTTGATGTTAGGTCTGAGAAATTCAA 491
Query 456 GCTCGTTGA-A-CT-A-CACC-GTTTGGATT----GCT-GTCTTTATGGACTGATAAACT 505
| | || | | || | | || | ||| || || |||| | | |||||||||
Sbjct 492 G-T-TTTTATATCTAAGC-CCAGATTGCTTTCCAAACTGGTCTAGA-AAATTGATAAACT 547
Query 506 ATAAGGGGAAATTATGTG-GGGT-TAATTTGAAGTATGCTTCTGATGGTGGATTTCCCCT 563
||||||| |||||| ||| | | ||| | |||| | || | ||||||||||||||||
Sbjct 548 ATAAGGGTAAATTAGGTGTGACTATAA-TGGAAG-A---TTATCATGGTGGATTTCCCCT 602
Query 564 TGAGTTACGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGACATATGCCTA 623
| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 603 TAAGTTGCGTATGTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGAGATATGCCTA 662
Query 624 CACTTTGAGGGATGAGAATAAACTCGTTAAGGTTAACT-ACAATCTTTCCGTTGCTGGGG 682
|||||||||| |||||||||| ||| | || || | || || | | |||| |||||
Sbjct 663 CACTTTGAGGCCTGAGAATAAAGTCG--A-GGACAA-TGACTATGTATATGTTGTTGGGG 718
Query 683 TGACTGCTTCAGGTGAAATTGTTTTGGTGGACCATAATACATGTAAACCGTTCTATGTTT 742
|||||||||||||||||||||||| | | || ||| ||| ||||||||| |||||||
Sbjct 719 CAACTGCTTCAGGTGAAATTGTTTTGACGAAACAGAATGCATATAAACCGTTTTATGTTT 778
Query 743 TCTACTTTAATCCCAAAAGGAACACTCTCCAAAGTGTTGAAATCAAATTTTTTGGAG 799
||||||||| ||| ||||||||||||||| ||| ||||||||| || | ||||||
Sbjct 779 TCTACTTTAGTCCTGAAAGGAACACTCTCCTAAGCGTTGAAATCCAAGGTGTTGGAG 835
> AT1G30920.1 | Symbols: | F-box family protein | chr1:11004242-11005444
REVERSE LENGTH=1203
Length=1203
Score = 267 bits (144), Expect = 2e-70
Identities = 632/852 (74%), Gaps = 96/852 (11%)
Strand=Plus/Plus
Query 1 TCGTCCCTTGTAGTAGCCG--ATTGT-CATATGAAGTTCTCTAAAGACATAA-GCCCA-T 55
||||| ||||||||||||| | | | ||| |||| |||| | |||||| || |||||
Sbjct 253 TCGTCTCTTGTAGTAGCCGCTAATCTCCATCTGAAATTCTTTGAAGACA-AACGCCCACA 311
Query 56 ACA--ATTGTACCTATGCTTCTGGTTTGATCTATTTTCATAATATG--GAT---AATG-A 107
||| ||||| ||||||||| ||||||||||||| | ||||||| ||| || | |
Sbjct 312 ACACGGTTGTAGTTATGCTTCTAGTTTGATCTATTTCCCTAATATGACGATCCGAAAGAA 371
Query 108 ---TGCA-G-T-AC----GTGTGATATGTAACCCTAGCACAGGACAATATGCG-ATCTTA 156
|| | | | || ||||||||||||||||||||||||| || |||| | || | |
Sbjct 372 GGGTG-ACGATCACTTGGGTGTGATATGTAACCCTAGCACAGGGCAGTATGGGTATGTGA 430
Query 157 -C-CACTACCTGAAAGGAGAACGCACAGA-CAT-TCGTA---TAGCTATTTAGGGTTTGA 209
| || |||| | | || || ||| | | | || || | ||||||||||||
Sbjct 431 TCTTACCACCTTTACTG-GATTTCA-AGAGCGTGCCTTACGGTAAATTTTTAGGGTTTGA 488
Query 210 TCCAATAGACAAGGAATTCAAGGTATTGTTCATGAATACTAGTAAATTT-AT-AGCTTCT 267
||| || |||||| ||||||||||||| || | ||| | | | ||| || | | ||
Sbjct 489 TCCGATTGACAAGCAATTCAAGGTATTAATCCCG-ATATTCG--ATTTTGATAAACATC- 544
Query 268 AGTGATATAGATCATTATATT-TTGACACTAGGAACTGGGAA-A-TTGAGGTGGAGGAAG 324
| | | |||||| ||||| || ||| ||||| || | || | ||| |||||||||||
Sbjct 545 A---A-ACGGATCATCATATTCTT-ACATTAGGAGCT-GAAACAGTTG-GGTGGAGGAAG 597
Query 325 ATCCAATGTCCTTTTAC-CCAT-AACC-C-T--TTTTGGAATAGGATTTGCATCAATGGG 378
||||||| ||| |||| | || || | | | ||||| | |||||||||||||||
Sbjct 598 ATCCAATCTCC-CTTACGCTATCTTCCTCATAGTAATGGAACA--ATTTGCATCAATGGG 654
Query 379 GTTTTGTATTACTTAGCTCATTCTGAA--A-G-AA-AG-T-ATTATGCGGTAGTTTGCTT 431
||||||||||| ||||| | | || | | || | | | ||| | ||||||||||
Sbjct 655 ATTTTGTATTACCTAGCT-AAAATTAATTATGCAATGGATAAAAATGTGCTAGTTTGCTT 713
Query 432 TGATGTTAGATCTGAGAAATTCAAGCTCGTTGAACTACACCGTTTGGA-TTGCTG-TCTT 489
||||||||| |||||| |||| | | ||| |||| | || | | ||| ||||
Sbjct 714 TGATGTTAGGTCTGAG-AATT-TTG-T-GTT--TCTACGTC-TTAACACATACTGCTCTT 766
Query 490 -TA-TGGACTGATAAACTATAAGGGGAAATTATGTGGGGTTAATTTGA-AGTATGCTT-C 545
|| | | || ||||||||||||| |||||| | | |||| | | |||||| ||
Sbjct 767 CTACTAAATTGGTAAACTATAAGGGTAAATTAGGCATGATTAA-TCAAGAGTATG-TTGA 824
Query 546 TGATGGTGGATTTCCCCTTGAGTTACGTATGTGGGTTCTAGAGGATGTC-GAGAAAGAGG 604
||||||||| |||||||| ||||| || |||||||||||||||||||| || ||||| |
Sbjct 825 TGATGGTGGTTTTCCCCTAAAGTTAAGTGTGTGGGTTCTAGAGGATGTCGGA-AAAGAAG 883
Query 605 AATGGACGACATATGCCTACACTTTGAGGGATGAGAATAAACTCGTTAAGGTTAACTACA 664
||||| ||||||||| |||||||||||||||||| |||||| ||| | ||||||| || |
Sbjct 884 AATGGTCGACATATGTCTACACTTTGAGGGATGATAATAAAGTCGATCAGGTTAAATATA 943
Query 665 ATCTTTCCGTTGCTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGTG--GACCA-T-AAT 720
|||| ||||||| |||||||||||||||||||||||||||||||||| || | | ||
Sbjct 944 ATCTCTCCGTTGTTGGGGTGACTGCTTCAGGTGAAATTGTTTTGGTGAAGAAGACTCAA- 1002
Query 721 ACA-TGTAAACCGTTCTATGTTTTCTACTTTAATCCC-A-AAAGGAACACTCTCCAAAGT 777
||| | ||| || || |||||||| |||||||| ||| | ||| || |||||| || |
Sbjct 1003 ACACT-TAAGCCATTTTATGTTTTATACTTTAACCCCGACAAA--AATACTCTCTTAACT 1059
Query 778 GTTGAAATCAAA 789
|||||| |||||
Sbjct 1060 GTTGAAGTCAAA 1071
> AT1G33020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11962746-11964832 FORWARD LENGTH=1647
Length=1647
Score = 239 bits (129), Expect = 4e-62
Identities = 666/911 (73%), Gaps = 93/911 (10%)
Strand=Plus/Plus
Query 19 GATTGTCATATGAAGTTCTCTAAAGACATAAGCCCATACAATTGTACCTATGCTTCTGGT 78
|||| ||||||||| |||||| ||||||| || | || | ||||| |||| |||||||
Sbjct 286 GATTTTCATATGAACTTCTCTGGAGACATACGCAGAAACGAGTGTACATATGTTTCTGGT 345
Query 79 TTGATCTATTTTCATA-ATA-TGGAT----AATGA----TG-CA-GTACGTGTGATATGT 126
|| |||||||| | || | | |||| ||| | || | | ||||||||||||
Sbjct 346 TTCATCTATTTCCCTAGAAAGCGGATCAAAAATTATTTGTGTGATTTCCGTGTGATATGT 405
Query 127 AACCCTAGCACAGGACAATATGCGATCTTACCACTACCTGA-AAGGAGAACGCACAGACA 185
||||||| ||| |||||||||||||||||| || | |||| || | | ||| || |
Sbjct 406 AACCCTATCACGGGACAATATGCGATCTTA-CA--A-CTGATAA-CA-TTC-CAC-GAGA 457
Query 186 TTCGTATAGCTATTTAGGGTTTGATCCAATAGACAAGGAATTCAAGGTATTGTTCATGAA 245
| | |||| ||||||||||||||| || |||||| |||||||||||||| ||||||
Sbjct 458 AGAG-A-AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCGCATGAA 515
Query 246 TACTAGTAAATTTATAGCTTCTAGTGATATAGATCATTATATTTTGACACTAGGAA-CTG 304
| || | || | || | | || || | | | ||| ||||| ||||| || ||| |||
Sbjct 516 -A-TA-T-AA-TGATCG-TGGTATTG-T-T-GTTCACCATATTCTGACATTA-GAACCTG 565
Query 305 GGAAATTGAGGTGGAGGAAGATCCAATGTCCTTTTA-CCCAT-AACCCTTT-TTGGAATA 361
| ||| |||||||||| || |||| |||||| ||| ||||| || ||||| | |||| |
Sbjct 566 GCAAAATGAGGTGGAGAAAAATCCGATGTCC-CTTAGCCCATGAA-CCTTTCTGGGAAGA 623
Query 362 GGATTTGCATCAATGGGGTTTTGTATTACTTAGCT----CATTCTGAAAGAAAGTATTAT 417
||| ||| ||||||||||||||||||||||||| || |||| || || ||||
Sbjct 624 -GATATGCGCCAATGGGGTTTTGTATTACTTAGCTGAACCA-ACTGATGGAGGGTCTTAT 681
Query 418 GCGGTAGT-TTGCTTTGATGTTAGATCTGAGAAATTCAAGCTCGTTGAAC-TACACCG-T 474
| | || | ||||||||||||| | |||||||||||||| | ||| || | | | |
Sbjct 682 GTGATA-TGTTGCTTTGATGTTCGGTCTGAGAAATTCAAATTTATTG-ACGCAAAATGCT 739
Query 475 TTGGATTGCTGTCTTTA-TGGACTGATAAACTATAAGGGGAAATTATGTGGGGTTAATTT 533
|||| || | ||| || | | |||| || |||||||| ||| || ||||| ||| ||
Sbjct 740 TTGG--TGATTTCTCTATTCAATTGATCAATTATAAGGGTAAACTAGGTGGGATTAGTTG 797
Query 534 GAAGTATGCT-TC-T-GATGGTGGA-TTTCCCCTTGAGTTACGTATGTGGGTTCTAGAGG 589
|||||||| | | | ||||| | | || ||||||| |||||||||||||||||
Sbjct 798 GAAGTATGATACCGTCGATGG-AAAGCGTACCGTTGAGTTGTATATGTGGGTTCTAGAGG 856
Query 590 ATGTCGAGAAAGAGGAATGGACGACATATGCCTACACTTTGAGGGATGAGAATAAACTCG 649
||||||||||| || ||||| | | ||| | |||| ||||| || | |||| | |
Sbjct 857 ATGTCGAGAAACAGAAATGGTCCAAATACGTCTACCCTTTGCCGG--G-GAATT--C-C- 909
Query 650 TTAAGGTTAACTACAATCTTTCCGTTGCTGGGGTGACTGCTTCAGGTGAAATTGTTTTGG 709
| | | || | || ||||||| || ||||| ||| |||||| |||||||| |
Sbjct 910 T-A-------C--CATTATT-CCGTTGCAGGAGTGACAGCTAAAGGTGATATTGTTTTTG 958
Query 710 TG--GACCATAATACATGTAAACCGTTCTATGTTTTCTACTTTAATCCC-AAAAGGAACA 766
| ||| || |||| ||||||||| |||||||||||| | |||||| ||||| || |
Sbjct 959 TCAAGACT-TAC-ACATCTAAACCGTTTTATGTTTTCTACGTAAATCCCGAAAAGAAA-A 1015
Query 767 CTCTCCAAAGTGTTGAAATCAAATTTTTTGGAGCTAAGGGTGAAGCGTTTAAGACTAGTT 826
|| ||||| | ||||||||| | | || ||| ||||| |||| | |||| |
Sbjct 1016 CTTTCCAACGCGTTGAAATCCA-T-----GG---TAACCATGAAGTGTTTGACACTAATA 1066
Query 827 -TCCTAGTTGACGCCTTTATAGACCATGCAGAGGATCTTAAGTTCCATATTAAGACGACA 885
|| ||||| ||||||| ||||||||| |||||||||| |||| || ||| || || |
Sbjct 1067 ATC-TAGTTTACGCCTTCGTAGACCATGTAGAGGATCTTCAGTTTGATGTTATGAAGAAA 1125
Query 886 ACATACGCTGC 896
||||| |||||
Sbjct 1126 ACATATGCTGC 1136
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 169 bits (91), Expect = 6e-41
Identities = 343/458 (75%), Gaps = 44/458 (10%)
Strand=Plus/Plus
Query 349 CCTTTTTGGAATAG-GATTTGCATCAATGGGGTTTTGTATTACT-TAGCTCA-TT---CT 402
||||||||||| || ||| ||||||||||||||||||||||||| | ||| | || ||
Sbjct 6 CCTTTTTGGAA-AGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCT-AGTTCAGCT 63
Query 403 GAAAGAAAGTATTATGCGGTAGTTTGC-TTTGATGTTAGATCTGAGAAATTCAAGCTCGT 461
| || | | || | | |||||| | |||||| |||| |||||||||||||| | |
Sbjct 64 CATGGATA-TCTTCT--GATAGTTT-CTTTTGATTTTAGGTCTGAGAAATTCAA--TTTT 117
Query 462 -TGAACTACA-C-CGTTTGGATTGCTGTC-TTTA-TGGACTGATAAACTATAAGGGGAAA 516
| || | || | | || || | || | || | |||||||||| || || |||
Sbjct 118 ATCAA-TGCATCAAGCTT-CCTT-TTTTCATCTACAAAATTGATAAACTACAAAGGTAAA 174
Query 517 TTATGTGGGGTTAATTTGAAGTATGCTTC-TGATGGTGGATTTCCCCTTGAGTTACGTAT 575
||| ||||| || ||||| |||| || || ||||| || |||| |||||||||||||
Sbjct 175 TTAGGTGGGATTGATTTGGCGTAT-AATCATGGTGGTGTATATCCCGTTGAGTTACGTAT 233
Query 576 GTGGGTTCTAGAGGATGTCGAGAAAGAGGAATGGACGACATATGCCTACACTTTGAGGGA 635
||||||||||||||||||||||||| | |||||| ||| | ||| ||| ||||| |||
Sbjct 234 GTGGGTTCTAGAGGATGTCGAGAAACACGAATGGTCGAGACATGTTTACTCTTTGCCGGA 293
Query 636 TGAGAATA-AACTCGTTAAG--GT-TAACTACAATCTTTCCGTTGCTGGGGTGACTGCT- 690
|| || || | || || || |||||||||| ||| ||||| |||| ||| ||||
Sbjct 294 -GACCATTGAA-T--TTCAGCAGTGTAACTACAATATTTGCGTTGGTGGGATGAATGCTA 349
Query 691 TCAGGTGAAATTGTTTTGGT-GGAC-CATA-ATA-C-ATGT--AAACCGTTCTATGTTTT 743
| ||||||||||||||| | ||| |||| ||| | | | |||||||| ||||||||
Sbjct 350 T-AGGTGAAATTGTTTTT-TCGGAGTCATATATATCTACATCCAAACCGTTTTATGTTTT 407
Query 744 CTACTTTAATCCC-AAAAGGAACACTCTCCAAAGTGTT 780
|||||| |||||| ||||| || || || || |||||
Sbjct 408 CTACTTCAATCCCGAAAAGAAAAACACTTTAAGGTGTT 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5