BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922229
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:1... 1168 0.0
> AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18396302-18398116
FORWARD LENGTH=1268
Length=1268
Score = 1168 bits (632), Expect = 0.0
Identities = 694/725 (96%), Gaps = 0/725 (0%)
Strand=Plus/Plus
Query 1 TCGCCAATGCTTCAATCGAGATGTCACAGACACAGGAATCAGCTATTCGCGGAGCTGAAT 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 222 TCGCCAATGCTTCAATCGAGATGTCGCAGACACAGGAATCAGCTATTCGCGGAGCTGAAT 281
Query 61 CTGACGTAATGGGTCTTCTTCTTAGGGAACGAATCGTCTTCCTCGGTAGTAGTATCGATG 120
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 282 CTGACGTCATGGGTCTTCTCCTTAGGGAACGAATCGTCTTTCTCGGTAGTAGTATCGACG 341
Query 121 ATTTCGTCGCTGATGCTATCATGAGTCAATTGCTACTTTTAGATGCTAAAGATCCTAAGA 180
||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| ||||
Sbjct 342 ATTTCGTCGCTGATGCTATTATGAGTCAGTTGCTTCTCTTAGATGCTAAAGATCCAAAGA 401
Query 181 AAGATATCAAACTCTTTATCAATTCTCCTGGTGGTTCTCTCAGTGCAACCATGGCTATAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 AAGATATCAAACTCTTTATCAATTCTCCTGGTGGTTCTCTCAGTGCAACCATGGCTATAT 461
Query 241 ACGATGTGGTACAGCTTGTGAGAGCTGATGTTTCGACGATTGCTCTTGGCATTGTTGCAT 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 462 ACGATGTGGTTCAGCTTGTGAGAGCTGATGTTTCGACGATTGCTCTTGGCATTGCTGCAT 521
Query 301 CAACAGCTTCGATTATTCTTGGAGCGGGAACTAAAGGTAAGCGCTTTGCTATGCCCAACA 360
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 522 CAACAGCTTCGATTATTCTTGGTGCGGGAACTAAAGGCAAGCGCTTTGCTATGCCCAACA 581
Query 361 CTAGGATAATGATTCATCAACCACTTGGAGGTGCGAGCGATCAAGCTATAGATGTTGAGA 420
| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 582 CGAGGATAATGATTCATCAACCTCTTGGAGGTGCAAGCGGTCAAGCTATAGATGTTGAGA 641
Query 421 TTCAAGCTAAGGAGGTTATGCATAACAAGAACAATGTCACCAGCATTATCGCGGGTTGTA 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 642 TTCAAGCTAAGGAAGTTATGCATAACAAGAACAATGTCACCAGCATTATCGCGGGATGTA 701
Query 481 CTAGTCGATCGTTTGAGCAGGTTCTTAAAGATATTGATAGAGACCGGTACATGTCTCCGA 540
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 702 CTAGTCGATCGTTTGAGCAGGTTCTGAAAGATATTGATAGGGACCGGTACATGTCTCCAA 761
Query 541 TTGAAGCGGTAGAGTATGGTTTGATAGATGGAGTTATTGATGGAGACAGCATTATTCCTC 600
||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 762 TTGAAGCAGTTGAGTATGGTTTAATTGATGGAGTTATTGATGGAGACAGCATTATTCCTC 821
Query 601 TTGAACCTGTTCCTGATAGAGTGAAACCGAGAGTAAACTACGAGGAGATTAGCAAGGATC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TTGAACCTGTTCCTGATAGAGTGAAACCGAGAGTAAACTACGAGGAGATTAGCAAGGATC 881
Query 661 CGATGAAATTCTTGACTCCCGAGATACCAGATGATGAGATTTACTAAAGGCAAGCTCATC 720
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| ||
Sbjct 882 CGATGAAATTCTTGACTCCCGAGATACCTGATGATGAGATCTACTAAAGCCAAGCTCGTC 941
Query 721 TAGAA 725
|||||
Sbjct 942 TAGAA 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35264371194
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5