BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922244
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31780.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Conserved... 3290 0.0
> AT1G31780.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Conserved
oligomeric complex COG6 (InterPro:IPR010490); Has 384 Blast
hits to 379 proteins in 190 species: Archae - 0; Bacteria
- 4; Metazoa - 151; Fungi - 156; Plants - 42; Viruses - 0;
Other Eukaryotes - 31 (source: NCBI BLink). | chr1:11391227-11394748
FORWARD LENGTH=2295
Length=2295
Score = 3290 bits (1781), Expect = 0.0
Identities = 1984/2084 (95%), Gaps = 6/2084 (0%)
Strand=Plus/Plus
Query 1 CCAAACGAAGCAGAGTAACAATGGCTTCGACGGTGGGATTAGCACCGGGACTTTCTCGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 95 CCAAACGAAGCAGAGTAACAATGGCTTCGACGGTGGGATTAGCACCGGGGCTCTCCCGGA 154
Query 61 AATTGAAGAAGGTATTGGAATGTCGTACAGATAGTCCGGATCTGGTGGCGTCGCTTAACG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 155 AATTGAAGAAGGTATTGGATTGTCGTACAGATAGTCCGGATCTGGTGGCGTCGCTTAACG 214
Query 121 CTTTATCCTCATTCTACGACGAGAACAGTGCTCACGCACGGCGAAATCTCAGATCGACGA 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 215 CTTTATCCTCATTCTACGACGAGAACAGTGCTCACGCACGGAGAAATCTCAGATCGACGA 274
Query 181 TCGAGAAGCGAGCGCTTCAGATCAACACCGAGTTCCTTAGGGCGGCTGATTCGACACAGA 240
||||||| ||||||||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 275 TCGAGAAACGAGCGCTTCAGATCAACAGTGAGTTCCTTAACGCGGCTGATTCGACTCAGA 334
Query 241 TCGCATTGGATCGCGTGGAGGAGGAAGTGAATGCTTTAGCTGATTGTTGCGATAAGATTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TCGCATTGGATCGCGTGGAGGAGGAAGTGAATGCTTTAGCTGATTGTTGCGATAAGATTG 394
Query 301 CGGCGGCGCTAAGCAGCTCCGCGGCTACCACTAGTGATATTATCAGTACTACTGAGAGGT 360
||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 395 CGGCGGCGCTAAGTAGTTCCGCGGCTACCACTAGCGATATTATTAGTACTACTGAGAGGC 454
Query 361 TAAAGCAAGAGCTTGAGGTTACTACTCAGAGGCAAGAGATCGTTAACTGTTTTCTTCGTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TAAAGCAAGAGCTTGAGGTTACTACTCAGAGGCAAGAGATCGTTAACTGTTTTCTTCGTG 514
Query 421 ATTACCAGCTTTCGAACGAAGAGATTAAAGCGCTTAGGGAAGATGAATTGAATGAGAATT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ATTACCAGCTTTCGAATGAAGAGATTAAAGCGCTTAGGGAAGATGAATTGAATGAGAATT 574
Query 481 TCTTCCAAGCGTTGTCTCACGTTCAAGAAATTCATTCCAATTGCAAATTACTTCTTAGGA 540
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 575 TCTTCCAAGCGTTGTCTCATGTTCAGGAAATTCATTCCAATTGCAAATTACTTCTTAGGA 634
Query 541 CGCATCATCAGCGTGCGGGTTTGGAACTGATGGATATGATGGCTGTGTATCAAGAAGGAG 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 635 CGCATCATCAGCGTGCGGGTTTGGAATTGATGGATATGATGGCTGTGTATCAAGAAGGAG 694
Query 601 CATATGAGCGCCTTTGCAGGTGGGTTCAGGCTGAGTGTAGGAAACTGGGTGATACGGATA 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 695 CATATGAGCGCCTTTGCAGGTGGGTTCAGGCTGAGTGTAGGAAACTCGGTGATACGGATA 754
Query 661 ACCCAGAGGTGAGTGAGCTTTTGAGGACTGCTGTTCGCTGTCTCAAAGAAAGACCCGTGC 720
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 755 ATCCAGAGGTGAGTGAGCTTTTGAGGACTGCTGTTCGTTGTCTCAAAGAAAGACCCGTTC 814
Query 721 TCTTCAAATATTGTGCAGAGGAGGTAGGGAATCTGAGGCACAATGCTTTATTTAGAAGGT 780
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 815 TCTTCAAATATTGTGCAGAGGAGGTAGGGAATCTGAGGCACAATGCGTTATTTAGAAGAT 874
Query 781 TTATTAGTGCTCTTACACGTGGAGGACCTGGAGGAATGCCTAGACCCATAGAAGTTCATG 840
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 875 TTATTAGCGCTCTTACACGTGGAGGGCCTGGAGGAATGCCTAGACCCATTGAAGTTCATG 934
Query 841 CCCATGACCCCTTACGATATGTGGGAGACATGCTTGGGTGGCTACATCAGGCTTTGGCAT 900
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 935 CCCATGACCCCTTAAGATACGTGGGAGACATGCTTGGGTGGCTACATCAGGCTTTGGCAT 994
Query 901 CCGAAAGAGAATTGGTTCATGCTTTATTTGATATAGACGCAGCTGACCATAAATCAAACG 960
| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 995 CAGAAAGAGAATTGGTTCATGCTTTATTTGATATAGACTCAGCTGACCATCAATCAAACG 1054
Query 961 CAAAGAATACCTCTGAGAATATTGCCCGAAAGGCAGCAGAATCTGA-TTTCACATTTGTT 1019
|||| |||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||
Sbjct 1055 CAAAAAATACCTCTGAGAATATTGCCCTAAAGGCAGGAGAATCTGACTTT-ACATTTGTT 1113
Query 1020 CTGGATAGAATTTTGGAAGGAGTTTGCCGGCCATTTAAAGTGAGAGTCGAACAAGTTTTG 1079
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1114 CTGGATAGAATTTTTGAAGGAGTTTGCCGTCCATTTAAAGTGAGAGTCGAACAAGTTCTG 1173
Query 1080 CAGTCACAACCAAGTCTTATTATTTCTTATAAACTCACTAACACCTTGGAGTTCTACAGC 1139
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1174 CAGTCACAACCAAGTCTTATTATTTCTTACAAACTCACCAACACCTTGGAGTTCTACAGC 1233
Query 1140 TACACTATCTCAGATTTACTCGGCCGAGACACTGCACTGTGTAATACAATTGGGATGGTA 1199
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1234 TACACTATCTCAGATTTACTTGGGCGAGACACTGCACTGTGTAATACAATTGGAATGGTA 1293
Query 1200 AAGAATGCTGCACAGAAAACTTTCTTTGACATTCTTAAAACCCGAGGGGAAAAACTTCTA 1259
||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1294 AAGGATGCTGCACAGAAAACCTTCTTTGACATTCTTAAAACCCGAGGAGAGAAACTTCTA 1353
Query 1260 CGATACCCTCCACCTGTAGCCGTCGATCTCTCTCCTCCTCCAGCTGTCCGAGAAGGAGTT 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1354 CGATACCCTCCACCTGTAGCCGTTGATCTCTCTCCTCCTCCAGCTGTCCGAGAAGGAGTT 1413
Query 1320 TCTCTAACTCTTGAGATAATCGAGAATTACAACAGTATGATGGTTTCTGCCTCAGGAGAG 1379
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1414 TCTCTTACTCTTGAGATTATCGAGAATTACAACAGTATGATGGTTTCTGCTTCAGGAGAG 1473
Query 1380 AAACCGGCTTTTGATCCCGTCCTCTCTGCACTGCTTGACCCAATTATCAAGATGTGCGAG 1439
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1474 AAACCGGCTTTTGATCCCGTCCTCTCTGCACTGCTTGACCCTATTATTAAGATGTGCGAG 1533
Query 1440 CAAGCAGCAGAGGCGCATAAATCGAAGAAGAGCGGCCAGTTACCCAGAAGAAGTAGAACA 1499
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1534 CAAGCAGCAGAGGCGCATAAATCAAAGAAGAGCGGCCAATTACCCAGAAGAAGCAGAACA 1593
Query 1500 AGCACCGACTCAAGCCAGCTAACCTCAGTCGATGCTCTACTCTCTAGTAGCCCGTCCCCA 1559
|| | |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1594 AGTTCTGACTCAAGCCAGTTAACCTCAGTCGATGCTCTACTCTCTAGCAGCCCATCCCCA 1653
Query 1560 CCACATAACAACGAAACACCATCGAAAATATTCCTCATCAACTGTCTATGCGCAATCCAA 1619
||||| |||||||||||||| || ||||||||||||||||||||| ||||||| ||||||
Sbjct 1654 CCACAGAACAACGAAACACCCTCAAAAATATTCCTCATCAACTGTTTATGCGCGATCCAA 1713
Query 1620 CAACCGTTGCTAAGACATGACGTTGCGGCCCAATACGTAACCAACATTGGATCAATGATC 1679
||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||||||
Sbjct 1714 CAACCATTGCTAAGACACGATGTTGCGTCCCAATACGTAACCAACATTGGATTAATGATC 1773
Query 1680 GAGAACCACATAAACCTCCTTGTCCAGAATGAAGTTGACACACTACTACAAAAATGCGGT 1739
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1774 GAGAACCACATAAACCTCCTCGTCCAGAATGAAGTTGACACACTACTCCACAAATGCGGT 1833
Query 1740 CTTTCGGACAAAATGCAAATCTTCCGCTCTTCGACATCCGAAGCTCCCCTG-TCTGAACG 1798
||||| |||||||||||||||||||||||||| ||||||||| || |||| ||||||||
Sbjct 1834 CTTTCAGACAAAATGCAAATCTTCCGCTCTTCCACATCCGAA-CTTCCCTTATCTGAACG 1892
Query 1799 ACAAGACACTTCACCCACAATGCTATCCGAATGCCTCAAGGCATTCTTCAGTCTCGTTTT 1858
|||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||
Sbjct 1893 ACAAGACACTTCACCCGCGATGCTATCCGAATGCCTCAAGGCATTCTTCGGCCTCGTTTT 1952
Query 1859 GGGAAGTGAAGGCTCTCTTCCTGAGTTTGAGCAGATACAAGTCCCTAAACTCAGGTCTGA 1918
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1953 GGGAAGCGAAGGCTCTCTTCCTGAGTTTGAGCAGATACAGGTCCCTAAACTCAGGTCTGA 2012
Query 1919 AGCTTGTGTCAAGGTCGCTAAAACTATAGCTGAAGCTTACGAAGTTATATACCAAGCTGT 1978
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2013 AGCTTGTGTCAGGGTCGCTAAAACTTTAGCTGAAGCTTACGAAGTTATATACCAAGCTGT 2072
Query 1979 AACGGATCAACAAAATGGATATCCAGATCCGAAA-TCTCTCGCCCGACATCCACCAGATC 2037
||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2073 AACAGATCAACAAAATGGATATCCAGATCC-AAAGTCTCTCGCCCGACATCCACCAGATC 2131
Query 2038 AAATCCGAACCATTCTTGGTATATGAATGTACGCTTCTTATTTT 2081
| |||||||| ||||||||||||||||||||||||| || ||||
Sbjct 2132 AGATCCGAACGATTCTTGGTATATGAATGTACGCTTGTTTTTTT 2175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103262521065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5