BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922245
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31790.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1908 0.0
> AT1G31790.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:11394690-11396018 REVERSE LENGTH=1329
Length=1329
Score = 1908 bits (1033), Expect = 0.0
Identities = 1184/1257 (94%), Gaps = 10/1257 (1%)
Strand=Plus/Plus
Query 3 CTGCAAAAGAAAAATTTCCGATGAAAACTCTGGAATTAGCTTTACCTCCTTCTCCACCAT 62
||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||| |
Sbjct 27 CTGCAAAAG-AAAATTTCAGATGAAAACTTTGGAATTAGCTTTACCTCCATCTCCACCGT 85
Query 63 CTTTAGTTCCTTCTTTCAACTACAATTCCGCCGCACGAAGCGTCGGAAATGACGTCAGAA 122
|||||||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 86 CTTTAGTTCCTTCTTTTAACTACAATTCCACCGCACGAAGCGTCGGGAATGATGTCAGAA 145
Query 123 CCAACTTCGATGTTCAACTTTTTCTAAGGAAACCCAAACACCAAAAATCAGAACCCGTCG 182
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 146 CCAACTTCGATGTTCAACTTTTTCTAAGGAAACCTAAACACCAAAAATCAGAACCTGTCG 205
Query 183 TCGTTATTCAACAACCTCAGATTCAACCGGAAAAACCAA-TTCCTCGTTGTTCTACTTCT 241
||||||||||||||||||||||||||||| |||| |||| || |||||||||||||||||
Sbjct 206 TCGTTATTCAACAACCTCAGATTCAACCGCAAAATCCAAGTT-CTCGTTGTTCTACTTCT 264
Query 242 GATATTCTCAGACTAATGGATTCTCTTTCTTTACCTGGAAACGAAGATCTTTACTCGTGT 301
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 265 GATATTCTCAGACTAATGGATTCTCTTTCTTTACCAGGAAACGAAGATATTTACTCTTGT 324
Query 302 CTTGCCAAAGAATCAGCCAGAGAAAACGATCGACGTGGAGCTTACGAGTTACAAGTGCAT 361
||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 325 CTTGCCAAAGAATCAGCCAGAGAAAACGATCAACGTGGAGCTCACGAGCTACAAGTGCAT 384
Query 362 ATCATGAAGTCCAGTATAAGAAGACCCACGACT-ACTTTTGTCAATCGTCTTCTCCTGAT 420
||||||||||| ||||| |||||||||| | |||||| ||||||||||||| ||||
Sbjct 385 ATCATGAAGTCTAGTAT---TAGACCCACGA-TCACTTTTATCAATCGTCTTCTTTTGAT 440
Query 421 GCATGTATCGTGTGGACGTTTAGATATTACACGCCACATGTTCGATAAAATGCCTCACAG 480
|||||| |||||||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 441 GCATGTTTCGTGTGGGCGTTTAGATATTACACGCCAGATGTTCGATAGAATGCCTCACAG 500
Query 481 AGATTTTCATTCATGGGCAATTGTTTTCCTCGGTTGTATTGAAATGGGTGATTACGAAGA 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 501 AGATTTTCATTCCTGGGCAATTGTTTTCCTCGGTTGTATTGAAATGGGTGATTACGAGGA 560
Query 541 CGCTGCTTTGCTCTTTGTTTCGATGTTGAAATATTCTCAGAATGGTGCTTTCAAGATTCC 600
||||||||| || |||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 561 CGCTGCTTTCCTTTTTGTTTCGATGTTGAAACATTCTCAGAAAGGTGCTTTCAAGATTCC 620
Query 601 GCCTTGGATCATGGGCTGCGTTTTGAAAGCTTGTGCCATGATTAGAGACTTTGAGTTAGG 660
| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 621 GTCTTGGATCTTGGGCTGCGTTTTGAAAGCTTGTGCCATGATTAGAGACTTCGAGTTAGG 680
Query 661 GAAACAGGTTCATGCCTTGTGTCATAAGCTAGGGTGTATAGACGAAGAAGATTCATATCT 720
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 681 GAAACAGGTTCATGCCTTGTGTCATAAGCTAGGGTTTATAGACGAAGAAGATTCATATCT 740
Query 721 CTCGGGTTCTTTGATACGTTTCTACGGAGAATTCAGGTGTTTGGAAGACGCTAATCTCGT 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATCGGGTTCTTTGATACGTTTCTACGGAGAATTCAGGTGTTTGGAAGACGCTAATCTCGT 800
Query 781 TTTACATCAGCTTTCTAATGCTAACACCGTTGTTTGGGCAGCGAAGGTTACTAACGATTA 840
||||| ||||| |||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct 801 GTTACACCAGCTCTCTAATGCTAACACTGTTGCTTGGGCAGCGAAAGTTACTAACGATTA 860
Query 841 CAGAGAAGGGGAGTTTCAAGAAGTAATCCGCGATTTCATCGAAATGGGTAACCACAGAAT 900
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 861 CAGAGAAGGAGAGTTTCAAGAAGTAATCCGCGATTTCATCGAAATGGGTAACCATGGAAT 920
Query 901 CAGGAAGAACGTCTCAGTGTTCTCTAATGTTCTAAAAGCATG-TACATGGGTCAGTGACG 959
|| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 921 CAAGAAGAACGTCTCAGTGTTCTCTAATGTTCTAAAAGCATGCT-CATGGGTCAGTGACG 979
Query 960 GTGGGAGAAGCGGGAAACAAGTGCATGCGGATGCTATAAAGCTCGGATTTGAGTCAGATT 1019
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 980 GTGGGAGAAGCGGGCAACAAGTGCATGCGAATGCTATAAAGCTCGGATTTGAGTCAGATT 1039
Query 1020 GTTTGATCCGATGTCGGTTAATTGAGATGTATGGGAAGTATGGGAAGGTGAAAGACGCGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 GTTTGATCCGATGTCGGTTAATTGAGATGTATGGGAAGTATGGGAAGGTGAAAGACGCGG 1099
Query 1080 AAAAGGTGTTCAAGAGTAGCAAGGACGAGACAAATGTTAATTGCTGGAACGCTATGGTCG 1139
||||||| || |||||||| ||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1100 AAAAGGTTTTTAAGAGTAGTAAGGACGAGACTAGTGTTAGTTGCTGGAACGCTATGGTCG 1159
Query 1140 CGGGTTATATGCAGAATGGGATTTACATTGAAGCCATAAAGCTTCTCTATCAGATGAAAG 1199
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1160 CAAGTTATATGCAGAATGGGATTTACATTGAAGCCATTAAGCTTCTCTATCAGATGAAAG 1219
Query 1200 CAACTGGAATCAAAGCACAGGACACGCTTTTGAACGAAGCCCACTTTCAGCTATAAC 1256
||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||
Sbjct 1220 CAACTGGAATCAAAGCACATGACACGCTTTTGAACGAAGCCCACCTTCAGATGTAAC 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62750681250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5