BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922249
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31814.1 | Symbols: FRL2 | FRIGIDA like 2 | chr1:11412608-11... 782 0.0
> AT1G31814.1 | Symbols: FRL2 | FRIGIDA like 2 | chr1:11412608-11414502
REVERSE LENGTH=1895
Length=1895
Score = 782 bits (423), Expect = 0.0
Identities = 562/627 (90%), Gaps = 18/627 (3%)
Strand=Plus/Plus
Query 2 ATTCATTTATGAGTTTGAGATGACT-GGTGAATTTGAACCAGTTTCGATTTTGAAAACTA 60
||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 900 ATTCATTTACGAGAATGAGATG-GTGGGTGAATTTGAACCAGTTTCGATTTTGAAAACTA 958
Query 61 GTTTGAAGAACTCTAGAGAAGCTGCTAAGAGAGTTTGCGCTGAAGGGAATTACTCTCTCA 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 959 GTTTGAAGAACTCTAGAGAAGCTGCTAAGAGAGTTTGTGCTGAAGGGAATTACTCTCTTA 1018
Query 121 AGGCACAGAATGAAGCTACGGATAAAGAGCTAAGTGCTTTGAGAGCAGTGATTAAAGTCG 180
||| ||||| |||||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 1019 AGGTGCAGAACGAAGCTACTGATAAAGAACTAAGTGCTTTGAGAGCAGTTATCAAAGTCG 1078
Query 181 TGAAAGAGAAAAACATTGAGTCTGAGTTTTCTG-AAGAGAAACTCGAAGAATGCGTTAAG 239
|||||||||||||||| ||||| ||||| || ||||||||||||||||||| ||||||
Sbjct 1079 TGAAAGAGAAAAACATCGAGTCCGAGTTCA-TGGAAGAGAAACTCGAAGAATGTGTTAAG 1137
Query 240 GAGTTGGAGGATCAGAAAGCTCAGAGGAAGCGTGCCACTAAGTTAAACTCACCTGCTAAT 299
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1138 GAGTTGGAGGATCAGAAAGCTCAGAGGAAGCGTGCCACTAAGTTCAATTCACCTGCTAAT 1197
Query 300 CCTCAACAACCACAACAGCAAAAGGTCGATAATAAGCGTCCTCGAGTTGCTAATGGTTCA 359
|| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CCCCAACAACCACAAGAACAAAAGGTCGATAATAAGCGTCCTCGAGTTGCTAATGGTTCA 1257
Query 360 AGTATGGAATATAGTTTGACAATCCCACCTCTGAGTCAGCAACAAC--CT-C---TTTTG 413
||||||||||||| ||||||||||||||||||||| | |||||||| | | |||||
Sbjct 1258 AGTATGGAATATAATTTGACAATCCCACCTCTGAGGCCGCAACAACAACCACCACTTTTG 1317
Query 414 CCTAATCCTAGCCAGAGTTTACAAGTGAACCCATATGGTCTCTTGAGCTCAATT-TTACC 472
|||| |||||| |||| |||||||||||||||||||||||| || |||||||| || ||
Sbjct 1318 CCTACTCCTAGTCAGATTTTACAAGTGAACCCATATGGTCTTTTAAGCTCAATACTT-CC 1376
Query 473 TGGTGTTGCTGTCCCATATGGCAACCCATTGGCACTATATGGCTCGGTTCCAGCTCCAGC 532
|||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||
Sbjct 1377 TGGTGTTGCTGTCCCATATGGCAACCCAAGGGCTCTATTTGGCTCGGTTCCAGCTCCAGC 1436
Query 533 TCCTCGACCAGTCTTTTATGAGCAGCAAACTGGTTATGGTGGATATGGGATGCCACCTCA 592
| ||||||| |||||||||| |||||||||||||||||| | || | | ||||||||
Sbjct 1437 TTCTCGACCCGTCTTTTATGTGCAGCAAACTGGTTATGG-G-AT--GCCA--CCACCTCA 1490
Query 593 ATACCACCTACCTTACTACCCTCAGTA 619
|||| || ||| ||||| ||||||||
Sbjct 1491 GTACCGCCCACCGTACTATCCTCAGTA 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5