BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922250
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31817.1 | Symbols: NFD3 | Ribosomal L18p/L5e family protein... 1496 0.0
> AT1G31817.1 | Symbols: NFD3 | Ribosomal L18p/L5e family protein
| chr1:11414749-11416444 REVERSE LENGTH=1216
Length=1216
Score = 1496 bits (810), Expect = 0.0
Identities = 928/986 (94%), Gaps = 3/986 (0%)
Strand=Plus/Plus
Query 1 CAAAATTTGCTTCGAGAAGAAAATGAATGGTGTTTCTCGTTATCTTCGAGCTTCTTCACT 60
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 67 CAAAATTTGCTTCGAGAAGAAAATGAATGGTGTCTCTCGTCATCTTCGAGCTTCTTCACT 126
Query 61 TCCGTCGTTGATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATC 120
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TCTTTCATTAATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATC 186
Query 121 TGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGGGCCAGTTCCTGGAGACTCTGCAAA 180
||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 187 TGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGTGCCAGTTTCTGGAGAGTCTGCAAA 246
Query 181 TAATTCAGGTTTACCAAACACGGGAAGATTCGGTTCCCCTTCGGAGCCTAACCCTCCGAC 240
||||||||| ||| |||||||||||||| |||||||| || |||||||||| ||| ||||
Sbjct 247 TAATTCAGGCTTATCAAACACGGGAAGAATCGGTTCCTCTCCGGAGCCTAATCCTTCGAC 306
Query 241 TCTGAGAACTTTCGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTAAACGGTTTCTC 300
| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 307 TTTGAGAACTTTTGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTCAATGGTTTCTC 366
Query 301 GGCTCCTAATGCTCCTCCTACCTTCAAAAATTCACTGAGATCAAGATTACCTAACTCCCT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 367 GGCTCCTAATGCTCCTCCTACCTTCAAAAGTTCACTGAGATCAAGATTACCAAACTCTCT 426
Query 361 ACCTGATCAGTTCAGTCAGACGAATCCAGGCTTACCAAACACTGGAGGAAGTGGATTCTC 420
||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 427 ACCTGATCAGTTCGGTCAGACGAATCCAGGCTTACCAAACACGGGAGGAAGCGGATTCTC 486
Query 421 TGCTCCTAGTGTATCAAGCTACGAGAATTTCACTCAATCTTCA-C--TTCTCAATGAGAA 477
|||||| ||| ||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct 487 TGCTCCAAGTTTATCAAGCTACGAGAATTTCACTCAATCTTCTTCGCTTCTTAAGGAGAA 546
Query 478 TCCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGA 537
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TTCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGA 606
Query 538 AGGAAGGAGAACCTCAGGGATATTCTCTCATTTCCATCGCCCAAACCTCGAAACGAATGC 597
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 607 AGGAAGGAGAACCGCAGGGATATTCTCTCATTTCCAACGCCCAAACCTCGAAACGAATGC 666
Query 598 TGACATCATTCACATCAAGATGTTGCGGAACAACACTTTTGTCACGGTTACAGATTCCAA 657
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 667 TGACATCATTCACATCAAGATGTTGAGGAACAACACTTTTGTCACGGTTACAGATTCCAA 726
Query 658 AGGAAACGTCAAATGCAAAGCAACATCCGGTAGTTTACCCGATCTGAAAGGTGGACGGAA 717
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 727 AGGAAACGTCAAATGCAAAGCTACATCTGGTAGTTTACCCGATCTGAAAGGTGGAAGGAA 786
Query 718 GATGACAAATTACACAGCTGATGCAACCGCAGAAAACATTGGGAGAAGAGCTAAGGCTAT 777
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 787 GATGACGAATTACACAGCTGATGCAACCGCTGAAAACATTGGGAGAAGAGCTAAGGCTAT 846
Query 778 GGGACTGAAATCTGTGGTTGTTAAGGTTAACGGATTTACACACTTCGGGAAGAAGAAGAA 837
||| |||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct 847 GGGGCTGAAATCTGTGGTGGTTAAGGTGAACGGATTTACGCATTTCGGAAAGAAGAAGAA 906
Query 838 AGCCATTATTGCGTTTAGGGACGGTTTCACCAACTCTAGGTCTGATCAGAATCCGATAGT 897
||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 907 AGCTATTATCGCGTTTAGAGACGGTTTCACCAACTCGAGGTCTGATCAGAATCCGATAGT 966
Query 898 GTACATCGAGGACACGACTAGGAAAGCTCATAATGGTTGCAGATTACCAAAGAAACGTCG 957
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 967 CTACATCGAGGACACTACTAGGAAAGCTCATAATGGTTGCAGATTACCAAGGAAACGTCG 1026
Query 958 GGTGTGAAAAGAAAACATCGCATGTC 983
|||||||||||||||| || ||||||
Sbjct 1027 GGTGTGAAAAGAAAACGTCCCATGTC 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48224781120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5