BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922251
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31820.1 | Symbols: | Amino acid permease family protein | ... 2106 0.0
AT1G31830.1 | Symbols: | Amino acid permease family protein | ... 1219 0.0
> AT1G31820.1 | Symbols: | Amino acid permease family protein
| chr1:11416451-11418279 REVERSE LENGTH=1728
Length=1728
Score = 2106 bits (1140), Expect = 0.0
Identities = 1356/1461 (93%), Gaps = 11/1461 (1%)
Strand=Plus/Plus
Query 13 TCATTACCATGAGAGACTATAACATGAATGACTTTGCTTATGGTGCTCTTCACGATGATG 72
||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 32 TCATTACCATGGGAGACTATAACATGAATGAATTTGCTTATGGTAATCTTTACGATGATG 91
Query 73 ATGAT---GATGGTGTTCCATCCTCTAAAGCA-GCAACAAATTCGATACAGAAAGTTTCA 128
||||| |||| || | ||| ||||||| | | ||| |||||||| ||||||||||||
Sbjct 92 ATGATGGCGATGTTGGTGGATCGTCTAAAGAAGGAAAC-AATTCGATTCAGAAAGTTTCA 150
Query 129 ATGTTACCACTCGTTTTCCTTATATTCTACGAAGTCTCAGGTGGTCCTTTTGGTGCTGAA 188
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 151 ATGTTACCACTCGTTTTCCTCATATTCTACGAAGTCTCAGGAGGTCCTTTCGGTGCTGAA 210
Query 189 GGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTGGGGTTTGTGATCTTCCCTTTC 248
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 211 GGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTAGGGTTTGTGATCTTCCCTTTC 270
Query 249 GTTTGGTGTATCCCTGAGGCACTAATCACTGCAGAGATGAGTACAATGTTCCCAATAAAT 308
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 271 ATTTGGTGTATCCCTGAGGCACTAATCACTGCGGAGATGAGTACAATGTTTCCAATAAAC 330
Query 309 GGGGGTTTCGTGGTTTGGGTCTCCTCTGCTTTAGGACCCTTTTGGGGGTTTCAAGTAGGT 368
|| ||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 331 GGCGGTTTTGTTGTTTGGGTCTCCTCTGCTTTGGGAACCTTTTGGGGGTTTCAAGTAGGT 390
Query 369 TGGATGAAATGGCTTTGCGGTGTTATCGATAACGCTTTGTATCCTGTTCTCTTCCTCGAT 428
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 391 TGGATGAAATGGCTTTGCGGTGTTATTGATAACGCTTTGTATCCTGTTCTTTTCCTCGAT 450
Query 429 TATTTGAAATCCGCTATCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTG 488
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TATTTGAAGTCCGCGGTCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTG 510
Query 489 ATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACT 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 ATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACC 570
Query 549 GCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCGGTAATGAGTCTGGTTTCGATT 608
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 571 GCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCTGTAATGAGTCTGGTTTCTATT 630
Query 609 CCACAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTG 668
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 CCGCAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTG 690
Query 669 TATCTCAACACGCTTTTCTGGAATCTAAACTATTGGGATTCGGTTAGTACACTAGCCGGT 728
||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 691 TATCTCAACACGCTTTTATGGAATCTGAACTACTGGGATTCGGTTAGTACACTGGCCGGT 750
Query 729 GAAGTGGCAAACCCGAAGCAAACACTTCCTAAGGCTTTGTCCTACGGTGTTATCTTTGTC 788
||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 751 GAAGTGGCAAATCCGAAGAAAACACTTCCTAAGGCTTTGTGTTACGGTGTTATCTTTGTC 810
Query 789 GCTCTTGCAAACTTCCTCCCTCTTTTGTCTGGGACAGGGGCTATCCCGCTGAATCGTGAG 848
|||||| | ||||||||||||||||||||||| || |||||||| ||| || ||||||||
Sbjct 811 GCTCTTTCGAACTTCCTCCCTCTTTTGTCTGGAACCGGGGCTATACCGTTGGATCGTGAG 870
Query 849 TTATGGACGGATGGTTATTTAGCTGAAGTTGCTCTAGCTATTGGTGGAGGATGGTTGCGG 908
|||||||| ||||| ||| ||||||| |||||| ||| || |||||||||||||| |
Sbjct 871 TTATGGACAGATGGATATCTAGCTGAGGTTGCTAAAGCCATCGGTGGAGGATGGTTACAA 930
Query 909 TTGTGGGTTCAAGCGGCTGCCGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGT 968
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 931 TTGTGGGTTCAAGCGGCTGCAGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGT 990
Query 969 AGTGATTCGTTTCAGCTTCTTGGAATGGCTGAACTCGGTATGCTTCCCGAGATCTTTGCG 1028
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 991 AGTGATTCCTTTCAGCTACTTGGAATGGCTGAACTCGGTATACTTCCCGAGATCTTTGCG 1050
Query 1029 AAAAGATCTCGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCTTCAGGTGTTTTA 1088
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1051 CAAAGATCTCGCTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCCTCAGGTGTTTTA 1110
Query 1089 CTCTTGTCTGGATTAAGCTTTCAAGAGATTGTAGCTGCAGAGAATTTGCTTTACTGTGGT 1148
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1111 CTCTTGTCAGGATTAAGCTTTCAAGAGATTATAGCTGCAGAGAATTTGCTTTACTGTGGT 1170
Query 1149 GGAATGATTTTGGAGTTTATAGCATTTGTTAGAATGAGGATA-AAACATCCGGCTGCATC 1207
||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1171 GGAATGATTTTGGAGTTTATAGCATTTGTTAGACTGAGGA-AGAAACATCCGGCTGCATC 1229
Query 1208 GAGACCGTATAAGATACCCGTTGGAACCGTTGGTTCGATTTTGATCTGTGTTCCTCCCAT 1267
|||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||| ||
Sbjct 1230 GAGACCGTATAAGATACCTGTTGGAACCGTTGGTTCGATTCTGATATGTGTCCCTCCGAT 1289
Query 1268 TGTACTGATCTGTTTCGTTGTTATCCTATCTACTCTCAAGGTGGCT-TTAGTGAGCTTTG 1326
||||||||| ||||| ||| || | ||||||||| | || |||||| || ||||||||||
Sbjct 1290 TGTACTGATATGTTTGGTTATTGTTCTATCTACTATTAAAGTGGCTCTT-GTGAGCTTTG 1348
Query 1327 TGATGGTAAT-ATTTGGTTTCTTGATGAAACCTTGTTTGAACCACATTGATCGAAAGAGA 1385
||||||| | ||| ||||||||||||||||||||||| || || || ||| |||||| |
Sbjct 1349 TGATGGTGGTCATT-GGTTTCTTGATGAAACCTTGTTTAAATCATATGGATGGAAAGAAA 1407
Query 1386 TGGGTCAAATTCTCAGTCAGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGG 1445
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 TGGGTCAAATTCTCAGTCTGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGT 1467
Query 1446 GAAGAGTCTTTGTTACGTTAG 1466
|||||||||||||||||||||
Sbjct 1468 GAAGAGTCTTTGTTACGTTAG 1488
> AT1G31830.1 | Symbols: | Amino acid permease family protein
| chr1:11418625-11420837 REVERSE LENGTH=1953
Length=1953
Score = 1219 bits (660), Expect = 0.0
Identities = 1106/1317 (84%), Gaps = 48/1317 (4%)
Strand=Plus/Plus
Query 119 GAAAGTTTCAATGTTACCACTCGTTTTCCTTATATTCTACGAAGTCTCAGGTGGTCCTTT 178
||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct 356 GAAAGTTTCCATGTTGCCACTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTT 415
Query 179 TGGTGCTGA-AGG-TAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTGGGGTTTGTG 236
||||| | | ||| |||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 416 TGGTG-T-AGAGGATAGTGTGAATGCAGCAGGACCATTATTAGCTCTTCTAGGGTTTGTG 473
Query 237 ATCTTCCCTTTCGTTTGGTGTATCCCTGAGGCACTAATCACTGCAGAGATGAGTACAATG 296
||||| |||||| ||||| ||||||||||||| | || ||||| |||||| | ||||||
Sbjct 474 ATCTTTCCTTTCATTTGGAGTATCCCTGAGGCTTTGATTACTGCGGAGATGGGAACAATG 533
Query 297 T-TCCCAATAAATGGGGGTT-TCGTGGTTTGGGTCTCCTCTGCTTTAGGACCCTTTTGGG 354
| |||| | ||||| |||| | || || ||||| ||||||||||| ||||| |||||||
Sbjct 534 TATCCCGA-GAATGGTGGTTAT-GTTGTGTGGGTTTCCTCTGCTTTGGGACCTTTTTGGG 591
Query 355 GGTTTCAAG-TAGGTTGGATGAAATGGCTTTGCGGTGTTATCGATAACGCTTTGTATCCT 413
|||||| || ||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 592 GGTTTC-AGCAAGGTTGGATGAAATGGCTTAGTGGTGTTATTGATAACGCTTTGTATCCT 650
Query 414 GTTCTCTTCCTCGATTATTTGAAATCCGCTA-TCCCGGCTTTAGCTA-CTGGTTTGCCAA 471
||||| || || || |||||||| || | | |||||||||||| || | ||||| || |
Sbjct 651 GTTCTGTTTCTTGACTATTTGAAGTCTG-GAGTCCCGGCTTTAGGTAGC-GGTTTACCGA 708
Query 472 GAGTTGCATCGATCTTGAT-CTTGACTCTATTGCTT-ACTTACT-TAAACTATAGAGGAC 528
||||||||||||||||| | | ||||| | ||| || || || | | ||||| || ||||
Sbjct 709 GAGTTGCATCGATCTTGGTGC-TGACTATTTTG-TTGACGTA-TCTGAACTACAGGGGAC 765
Query 529 TAACCATTGTTGGTTGGACTGCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCGG 588
|||| || ||||||||| ||||||| |||||||||||||||| || ||||||||||| |
Sbjct 766 TAACTATAGTTGGTTGGGTTGCTGTGCTTATGGGAGTTTTCTCCATCCTTCCGTTTGCTG 825
Query 589 TAATGAGTCTGGTTTCGATTCCACAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAG 648
| ||| || || |||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 826 TGATGGGTTTGATTTCGATTCCGCAGCTAGAGCCTTCGAGATGGCTTGTGATGGACTTAG 885
Query 649 GAAATGTCAACTGGAACTTGTATCTCAACACGCTTTTCTGGAATCTAAACTATTGGGATT 708
| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 886 GGAATGTGAACTGGAATTTGTATCTTAACACGCTTTTCTGGAATCTAAACTATTGGGACT 945
Query 709 CGGTTAGTACACTAGCCGGTGAAGTGGCAAACCCGAAGCAAACACTTCCTAAGGCTTTGT 768
|| ||||||||||||| |||||||| | |||||| || || |||||||| ||||||||||
Sbjct 946 CGATTAGTACACTAGCTGGTGAAGTTGAAAACCCCAACCATACACTTCCAAAGGCTTTGT 1005
Query 769 CCTACGGTGTTATCTTTGTCGC-TCTTGCAAACTTCCTCCCTCTTTTGTCTGGGA-CAGG 826
|| ||||| ||||| || || | || | || || ||||||||||| |||| | | ||
Sbjct 1006 TTTATGGTGTGATCTTAGTTGCTTGTT-CTTACATCTTCCCTCTTTTGGCTGGAATC-GG 1063
Query 827 GGCTATCCCGCTGA-ATCGTGAGTTATGGACGGATGGTTATTTAGCTGAAGTTGCTC-TA 884
||| |||||||| | | |||||| |||||| ||||| ||||| |||| || || | |
Sbjct 1064 GGCAATCCCGCT-AGAGCGTGAGAAATGGACAGATGGGTATTTTTCTGATGTGGC-CAAA 1121
Query 885 GCTATTGGTGGAG-GATGGTTGCGGTTGTGGGTTCAAGCGGCTGCCGCTACATCAAACAT 943
||| ||||||||| | |||||| | | |||||||||||||||||| ||||||||||||||
Sbjct 1122 GCTCTTGGTGGAGCG-TGGTTGAGATGGTGGGTTCAAGCGGCTGCAGCTACATCAAACAT 1180
Query 944 GGGAATGTTTTTAGCCGAAATGAGTAGTGATTCGTTTCAGCTTCTTGGAATGGCTGAACT 1003
|||||||||| ||||||| ||||||||||| || ||||||||||| ||||||||||| |
Sbjct 1181 GGGAATGTTTATAGCCGAGATGAGTAGTGACTCTTTTCAGCTTCTCGGAATGGCTGAGCG 1240
Query 1004 CGGTATGCTTCCCGAGATCTTTGCGAAAAGATCTCGTTACGGGACACCTTTACTAGGGAT 1063
|||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1241 CGGTATGCTTCCCGAGTTCTTTGCCAAAAGGTCACGTTACGGGACACCTTTACTAGGGAT 1300
Query 1064 TCTGTTTTCAGCTTCAGGTGTT-TTACTCTTGTCT-GGATTAAGCTTTCAAGAGATTGTA 1121
|||||||||||| ||||||||| || ||||||||| || | |||||||||||||||||||
Sbjct 1301 TCTGTTTTCAGCGTCAGGTGTTGTT-CTCTTGTCTTGGCT-AAGCTTTCAAGAGATTGTA 1358
Query 1122 GCTGCAGAGAATTTGCTTTACTGTGGTGGAATGATTTTGGAGTTTATAGCATTTGTTAGA 1181
||||||||||| || || ||||| | ||| ||||| || ||||||||||| |||||||||
Sbjct 1359 GCTGCAGAGAACTTACTCTACTGCGTTGGTATGATCTTAGAGTTTATAGCGTTTGTTAGA 1418
Query 1182 ATGAGGATAAAACATCCGGCTGCATCGAGACCGTATAAGATACCCGTTGGAACCGTTGGT 1241
||||| || ||||| || |||||||| |||||||| |||||||| |||||||| |||
Sbjct 1419 ATGAGAATGAAACACCCTGCTGCATCAAGACCGTACAAGATACCTATTGGAACCACAGGT 1478
Query 1242 TCGATTTTGATCTGTGTTCCTCCCATTGTACTGATCTGTT-TCGTTGTTATC-CTATC-T 1298
||||| | || ||| ||||||| | ||||||||||| | ||||| | | || || |
Sbjct 1479 TCGATCCTCATGTGTATTCCTCCAACCATACTGATCTGTGCT-GTTGT-AGCACTCTCGT 1536
Query 1299 ACTCTCAAGGTGGCTTTAGTGAGCTTTGTGATGGTAAT-ATTTGGTTTCTTGATGAAA-C 1356
|||| || || ||| ||||||| |||||||| | || ||| |||||| |||| | | |
Sbjct 1537 -CTCTTAAAGTAGCTGCAGTGAGCATTGTGATGATGATCATT-GGTTTCCTGAT-ACATC 1593
Query 1357 CTTGTT-TGAACCACATTGATCGAAAGAGATGGGTCAAATTCTC-AGTCAGTTCTGA 1411
||| | ||||||| || |||||||||||||||||||||||||| | ||||||||||
Sbjct 1594 CTT-TACTGAACCATATGGATCGAAAGAGATGGGTCAAATTCTCCA-TCAGTTCTGA 1648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5