BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922251 Length=1487 Score E Sequences producing significant alignments: (Bits) Value AT1G31820.1 | Symbols: | Amino acid permease family protein | ... 2106 0.0 AT1G31830.1 | Symbols: | Amino acid permease family protein | ... 1219 0.0 > AT1G31820.1 | Symbols: | Amino acid permease family protein | chr1:11416451-11418279 REVERSE LENGTH=1728 Length=1728 Score = 2106 bits (1140), Expect = 0.0 Identities = 1356/1461 (93%), Gaps = 11/1461 (1%) Strand=Plus/Plus Query 13 TCATTACCATGAGAGACTATAACATGAATGACTTTGCTTATGGTGCTCTTCACGATGATG 72 ||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct 32 TCATTACCATGGGAGACTATAACATGAATGAATTTGCTTATGGTAATCTTTACGATGATG 91 Query 73 ATGAT---GATGGTGTTCCATCCTCTAAAGCA-GCAACAAATTCGATACAGAAAGTTTCA 128 ||||| |||| || | ||| ||||||| | | ||| |||||||| |||||||||||| Sbjct 92 ATGATGGCGATGTTGGTGGATCGTCTAAAGAAGGAAAC-AATTCGATTCAGAAAGTTTCA 150 Query 129 ATGTTACCACTCGTTTTCCTTATATTCTACGAAGTCTCAGGTGGTCCTTTTGGTGCTGAA 188 |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct 151 ATGTTACCACTCGTTTTCCTCATATTCTACGAAGTCTCAGGAGGTCCTTTCGGTGCTGAA 210 Query 189 GGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTGGGGTTTGTGATCTTCCCTTTC 248 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 211 GGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTAGGGTTTGTGATCTTCCCTTTC 270 Query 249 GTTTGGTGTATCCCTGAGGCACTAATCACTGCAGAGATGAGTACAATGTTCCCAATAAAT 308 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 271 ATTTGGTGTATCCCTGAGGCACTAATCACTGCGGAGATGAGTACAATGTTTCCAATAAAC 330 Query 309 GGGGGTTTCGTGGTTTGGGTCTCCTCTGCTTTAGGACCCTTTTGGGGGTTTCAAGTAGGT 368 || ||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 331 GGCGGTTTTGTTGTTTGGGTCTCCTCTGCTTTGGGAACCTTTTGGGGGTTTCAAGTAGGT 390 Query 369 TGGATGAAATGGCTTTGCGGTGTTATCGATAACGCTTTGTATCCTGTTCTCTTCCTCGAT 428 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 391 TGGATGAAATGGCTTTGCGGTGTTATTGATAACGCTTTGTATCCTGTTCTTTTCCTCGAT 450 Query 429 TATTTGAAATCCGCTATCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTG 488 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 451 TATTTGAAGTCCGCGGTCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTG 510 Query 489 ATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACT 548 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 ATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACC 570 Query 549 GCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCGGTAATGAGTCTGGTTTCGATT 608 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 571 GCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCTGTAATGAGTCTGGTTTCTATT 630 Query 609 CCACAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTG 668 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 631 CCGCAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTG 690 Query 669 TATCTCAACACGCTTTTCTGGAATCTAAACTATTGGGATTCGGTTAGTACACTAGCCGGT 728 ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||| Sbjct 691 TATCTCAACACGCTTTTATGGAATCTGAACTACTGGGATTCGGTTAGTACACTGGCCGGT 750 Query 729 GAAGTGGCAAACCCGAAGCAAACACTTCCTAAGGCTTTGTCCTACGGTGTTATCTTTGTC 788 ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 751 GAAGTGGCAAATCCGAAGAAAACACTTCCTAAGGCTTTGTGTTACGGTGTTATCTTTGTC 810 Query 789 GCTCTTGCAAACTTCCTCCCTCTTTTGTCTGGGACAGGGGCTATCCCGCTGAATCGTGAG 848 |||||| | ||||||||||||||||||||||| || |||||||| ||| || |||||||| Sbjct 811 GCTCTTTCGAACTTCCTCCCTCTTTTGTCTGGAACCGGGGCTATACCGTTGGATCGTGAG 870 Query 849 TTATGGACGGATGGTTATTTAGCTGAAGTTGCTCTAGCTATTGGTGGAGGATGGTTGCGG 908 |||||||| ||||| ||| ||||||| |||||| ||| || |||||||||||||| | Sbjct 871 TTATGGACAGATGGATATCTAGCTGAGGTTGCTAAAGCCATCGGTGGAGGATGGTTACAA 930 Query 909 TTGTGGGTTCAAGCGGCTGCCGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGT 968 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 931 TTGTGGGTTCAAGCGGCTGCAGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGT 990 Query 969 AGTGATTCGTTTCAGCTTCTTGGAATGGCTGAACTCGGTATGCTTCCCGAGATCTTTGCG 1028 |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 991 AGTGATTCCTTTCAGCTACTTGGAATGGCTGAACTCGGTATACTTCCCGAGATCTTTGCG 1050 Query 1029 AAAAGATCTCGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCTTCAGGTGTTTTA 1088 |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1051 CAAAGATCTCGCTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCCTCAGGTGTTTTA 1110 Query 1089 CTCTTGTCTGGATTAAGCTTTCAAGAGATTGTAGCTGCAGAGAATTTGCTTTACTGTGGT 1148 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1111 CTCTTGTCAGGATTAAGCTTTCAAGAGATTATAGCTGCAGAGAATTTGCTTTACTGTGGT 1170 Query 1149 GGAATGATTTTGGAGTTTATAGCATTTGTTAGAATGAGGATA-AAACATCCGGCTGCATC 1207 ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| Sbjct 1171 GGAATGATTTTGGAGTTTATAGCATTTGTTAGACTGAGGA-AGAAACATCCGGCTGCATC 1229 Query 1208 GAGACCGTATAAGATACCCGTTGGAACCGTTGGTTCGATTTTGATCTGTGTTCCTCCCAT 1267 |||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||| || Sbjct 1230 GAGACCGTATAAGATACCTGTTGGAACCGTTGGTTCGATTCTGATATGTGTCCCTCCGAT 1289 Query 1268 TGTACTGATCTGTTTCGTTGTTATCCTATCTACTCTCAAGGTGGCT-TTAGTGAGCTTTG 1326 ||||||||| ||||| ||| || | ||||||||| | || |||||| || |||||||||| Sbjct 1290 TGTACTGATATGTTTGGTTATTGTTCTATCTACTATTAAAGTGGCTCTT-GTGAGCTTTG 1348 Query 1327 TGATGGTAAT-ATTTGGTTTCTTGATGAAACCTTGTTTGAACCACATTGATCGAAAGAGA 1385 ||||||| | ||| ||||||||||||||||||||||| || || || ||| |||||| | Sbjct 1349 TGATGGTGGTCATT-GGTTTCTTGATGAAACCTTGTTTAAATCATATGGATGGAAAGAAA 1407 Query 1386 TGGGTCAAATTCTCAGTCAGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGG 1445 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1408 TGGGTCAAATTCTCAGTCTGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGT 1467 Query 1446 GAAGAGTCTTTGTTACGTTAG 1466 ||||||||||||||||||||| Sbjct 1468 GAAGAGTCTTTGTTACGTTAG 1488 > AT1G31830.1 | Symbols: | Amino acid permease family protein | chr1:11418625-11420837 REVERSE LENGTH=1953 Length=1953 Score = 1219 bits (660), Expect = 0.0 Identities = 1106/1317 (84%), Gaps = 48/1317 (4%) Strand=Plus/Plus Query 119 GAAAGTTTCAATGTTACCACTCGTTTTCCTTATATTCTACGAAGTCTCAGGTGGTCCTTT 178 ||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |||||||| Sbjct 356 GAAAGTTTCCATGTTGCCACTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTT 415 Query 179 TGGTGCTGA-AGG-TAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTGGGGTTTGTG 236 ||||| | | ||| |||||||||||||||||||||||| ||||||||| | ||||||||| Sbjct 416 TGGTG-T-AGAGGATAGTGTGAATGCAGCAGGACCATTATTAGCTCTTCTAGGGTTTGTG 473 Query 237 ATCTTCCCTTTCGTTTGGTGTATCCCTGAGGCACTAATCACTGCAGAGATGAGTACAATG 296 ||||| |||||| ||||| ||||||||||||| | || ||||| |||||| | |||||| Sbjct 474 ATCTTTCCTTTCATTTGGAGTATCCCTGAGGCTTTGATTACTGCGGAGATGGGAACAATG 533 Query 297 T-TCCCAATAAATGGGGGTT-TCGTGGTTTGGGTCTCCTCTGCTTTAGGACCCTTTTGGG 354 | |||| | ||||| |||| | || || ||||| ||||||||||| ||||| ||||||| Sbjct 534 TATCCCGA-GAATGGTGGTTAT-GTTGTGTGGGTTTCCTCTGCTTTGGGACCTTTTTGGG 591 Query 355 GGTTTCAAG-TAGGTTGGATGAAATGGCTTTGCGGTGTTATCGATAACGCTTTGTATCCT 413 |||||| || ||||||||||||||||||| | |||||||| |||||||||||||||||| Sbjct 592 GGTTTC-AGCAAGGTTGGATGAAATGGCTTAGTGGTGTTATTGATAACGCTTTGTATCCT 650 Query 414 GTTCTCTTCCTCGATTATTTGAAATCCGCTA-TCCCGGCTTTAGCTA-CTGGTTTGCCAA 471 ||||| || || || |||||||| || | | |||||||||||| || | ||||| || | Sbjct 651 GTTCTGTTTCTTGACTATTTGAAGTCTG-GAGTCCCGGCTTTAGGTAGC-GGTTTACCGA 708 Query 472 GAGTTGCATCGATCTTGAT-CTTGACTCTATTGCTT-ACTTACT-TAAACTATAGAGGAC 528 ||||||||||||||||| | | ||||| | ||| || || || | | ||||| || |||| Sbjct 709 GAGTTGCATCGATCTTGGTGC-TGACTATTTTG-TTGACGTA-TCTGAACTACAGGGGAC 765 Query 529 TAACCATTGTTGGTTGGACTGCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCGG 588 |||| || ||||||||| ||||||| |||||||||||||||| || ||||||||||| | Sbjct 766 TAACTATAGTTGGTTGGGTTGCTGTGCTTATGGGAGTTTTCTCCATCCTTCCGTTTGCTG 825 Query 589 TAATGAGTCTGGTTTCGATTCCACAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAG 648 | ||| || || |||||||||| ||||| |||||||||||||||||||||||||| |||| Sbjct 826 TGATGGGTTTGATTTCGATTCCGCAGCTAGAGCCTTCGAGATGGCTTGTGATGGACTTAG 885 Query 649 GAAATGTCAACTGGAACTTGTATCTCAACACGCTTTTCTGGAATCTAAACTATTGGGATT 708 | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | Sbjct 886 GGAATGTGAACTGGAATTTGTATCTTAACACGCTTTTCTGGAATCTAAACTATTGGGACT 945 Query 709 CGGTTAGTACACTAGCCGGTGAAGTGGCAAACCCGAAGCAAACACTTCCTAAGGCTTTGT 768 || ||||||||||||| |||||||| | |||||| || || |||||||| |||||||||| Sbjct 946 CGATTAGTACACTAGCTGGTGAAGTTGAAAACCCCAACCATACACTTCCAAAGGCTTTGT 1005 Query 769 CCTACGGTGTTATCTTTGTCGC-TCTTGCAAACTTCCTCCCTCTTTTGTCTGGGA-CAGG 826 || ||||| ||||| || || | || | || || ||||||||||| |||| | | || Sbjct 1006 TTTATGGTGTGATCTTAGTTGCTTGTT-CTTACATCTTCCCTCTTTTGGCTGGAATC-GG 1063 Query 827 GGCTATCCCGCTGA-ATCGTGAGTTATGGACGGATGGTTATTTAGCTGAAGTTGCTC-TA 884 ||| |||||||| | | |||||| |||||| ||||| ||||| |||| || || | | Sbjct 1064 GGCAATCCCGCT-AGAGCGTGAGAAATGGACAGATGGGTATTTTTCTGATGTGGC-CAAA 1121 Query 885 GCTATTGGTGGAG-GATGGTTGCGGTTGTGGGTTCAAGCGGCTGCCGCTACATCAAACAT 943 ||| ||||||||| | |||||| | | |||||||||||||||||| |||||||||||||| Sbjct 1122 GCTCTTGGTGGAGCG-TGGTTGAGATGGTGGGTTCAAGCGGCTGCAGCTACATCAAACAT 1180 Query 944 GGGAATGTTTTTAGCCGAAATGAGTAGTGATTCGTTTCAGCTTCTTGGAATGGCTGAACT 1003 |||||||||| ||||||| ||||||||||| || ||||||||||| ||||||||||| | Sbjct 1181 GGGAATGTTTATAGCCGAGATGAGTAGTGACTCTTTTCAGCTTCTCGGAATGGCTGAGCG 1240 Query 1004 CGGTATGCTTCCCGAGATCTTTGCGAAAAGATCTCGTTACGGGACACCTTTACTAGGGAT 1063 |||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||| Sbjct 1241 CGGTATGCTTCCCGAGTTCTTTGCCAAAAGGTCACGTTACGGGACACCTTTACTAGGGAT 1300 Query 1064 TCTGTTTTCAGCTTCAGGTGTT-TTACTCTTGTCT-GGATTAAGCTTTCAAGAGATTGTA 1121 |||||||||||| ||||||||| || ||||||||| || | ||||||||||||||||||| Sbjct 1301 TCTGTTTTCAGCGTCAGGTGTTGTT-CTCTTGTCTTGGCT-AAGCTTTCAAGAGATTGTA 1358 Query 1122 GCTGCAGAGAATTTGCTTTACTGTGGTGGAATGATTTTGGAGTTTATAGCATTTGTTAGA 1181 ||||||||||| || || ||||| | ||| ||||| || ||||||||||| ||||||||| Sbjct 1359 GCTGCAGAGAACTTACTCTACTGCGTTGGTATGATCTTAGAGTTTATAGCGTTTGTTAGA 1418 Query 1182 ATGAGGATAAAACATCCGGCTGCATCGAGACCGTATAAGATACCCGTTGGAACCGTTGGT 1241 ||||| || ||||| || |||||||| |||||||| |||||||| |||||||| ||| Sbjct 1419 ATGAGAATGAAACACCCTGCTGCATCAAGACCGTACAAGATACCTATTGGAACCACAGGT 1478 Query 1242 TCGATTTTGATCTGTGTTCCTCCCATTGTACTGATCTGTT-TCGTTGTTATC-CTATC-T 1298 ||||| | || ||| ||||||| | ||||||||||| | ||||| | | || || | Sbjct 1479 TCGATCCTCATGTGTATTCCTCCAACCATACTGATCTGTGCT-GTTGT-AGCACTCTCGT 1536 Query 1299 ACTCTCAAGGTGGCTTTAGTGAGCTTTGTGATGGTAAT-ATTTGGTTTCTTGATGAAA-C 1356 |||| || || ||| ||||||| |||||||| | || ||| |||||| |||| | | | Sbjct 1537 -CTCTTAAAGTAGCTGCAGTGAGCATTGTGATGATGATCATT-GGTTTCCTGAT-ACATC 1593 Query 1357 CTTGTT-TGAACCACATTGATCGAAAGAGATGGGTCAAATTCTC-AGTCAGTTCTGA 1411 ||| | ||||||| || |||||||||||||||||||||||||| | |||||||||| Sbjct 1594 CTT-TACTGAACCATATGGATCGAAAGAGATGGGTCAAATTCTCCA-TCAGTTCTGA 1648 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73342996245 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5