BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922252
Length=1526
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31830.1 | Symbols: | Amino acid permease family protein | ... 2350 0.0
AT1G31820.1 | Symbols: | Amino acid permease family protein | ... 1162 0.0
> AT1G31830.1 | Symbols: | Amino acid permease family protein
| chr1:11418625-11420837 REVERSE LENGTH=1953
Length=1953
Score = 2350 bits (1272), Expect = 0.0
Identities = 1446/1530 (95%), Gaps = 11/1530 (1%)
Strand=Plus/Plus
Query 1 TTTAAAATCTGGATGACGTTATGCAGAAGCGGAGAATCATCACTGTGAACCCCTCGGCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 196 TTTAAAATCTGGATGACGTTATGCAGAAGCGGAGAATCATCACTGTGAACCCCTCCGCGT 255
Query 61 CTATTGAGATGAGACAGTAC-AGTAATAATGACGTTCCTTACTCAAGTGTCGGTGATGAT 119
||||||||||||| |||||| || |||||||| |||||||||||||||||||||| ||||
Sbjct 256 CTATTGAGATGAGTCAGTACGAG-AATAATGAAGTTCCTTACTCAAGTGTCGGTGCTGAT 314
Query 120 GAGGTTCCGTCAT---CGCCTAAAGCTACCGATAAGATTAGGAAAGTTTCGATGTTGCCA 176
|||||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 315 GAGGTTCCATCATCACCGCCTAAAGCTACCGATAAGATTCGGAAAGTTTCCATGTTGCCA 374
Query 177 CTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTTTGGTGTAGAGGATAGTGTG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 CTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTTTGGTGTAGAGGATAGTGTG 434
Query 237 AATGCTGCTGGACCATTGTTAGCTCTTTTAGGGTTTGTGATCTTTCCTTTCATTTGGAGT 296
||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 435 AATGCAGCAGGACCATTATTAGCTCTTCTAGGGTTTGTGATCTTTCCTTTCATTTGGAGT 494
Query 297 ATTCCTGAGGCTCTGATCACTGCAGAGATGGGCACAATGTTTCCCGAGAATGGCGGTTAT 356
|| ||||||||| |||| ||||| |||||||| ||||||| |||||||||||| ||||||
Sbjct 495 ATCCCTGAGGCTTTGATTACTGCGGAGATGGGAACAATGTATCCCGAGAATGGTGGTTAT 554
Query 357 GTTGTGTGGGTCTCCTCTGCTTTGGGGCCATTTTGGGGGTTTCAGCAAGGTTGGATGAAA 416
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 555 GTTGTGTGGGTTTCCTCTGCTTTGGGACCTTTTTGGGGGTTTCAGCAAGGTTGGATGAAA 614
Query 417 TGGCTGAGTGGTGTTATTGATAACGCTTTGTATCCTGTTCTGTTTCTTGATTATTTGAAA 476
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 615 TGGCTTAGTGGTGTTATTGATAACGCTTTGTATCCTGTTCTGTTTCTTGACTATTTGAAG 674
Query 477 TCTGGAATCCCGGCTCTGGGTAGCGGTTTGCCGAGAGTTGC-TGCGATCTTGGTGTTGAC 535
|||||| |||||||| | ||||||||||| ||||||||||| | ||||||||||| ||||
Sbjct 675 TCTGGAGTCCCGGCTTTAGGTAGCGGTTTACCGAGAGTTGCAT-CGATCTTGGTGCTGAC 733
Query 536 TATTTTGTTGACGTATCTGAACTACAGGGGACTAACTATAGTTGGTTGGGTTGCTGTGCT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TATTTTGTTGACGTATCTGAACTACAGGGGACTAACTATAGTTGGTTGGGTTGCTGTGCT 793
Query 596 TATGGGAGTTTTCTCGATCCTTCCGTTTGCTGTGATGGGTTTGATTTCGATTCCGCAGTT 655
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 794 TATGGGAGTTTTCTCCATCCTTCCGTTTGCTGTGATGGGTTTGATTTCGATTCCGCAGCT 853
Query 656 AGAGCCTTCAAGATGGCTTGTAATGGACTTAGGGAATGTGAACTGGAATTTGTATCTAAA 715
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 854 AGAGCCTTCGAGATGGCTTGTGATGGACTTAGGGAATGTGAACTGGAATTTGTATCTTAA 913
Query 716 CACGCTTTTCTGGAATCTAAACTATTGGGACTCGATCAGCACACTAGCTGGTGAAGTCGA 775
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 914 CACGCTTTTCTGGAATCTAAACTATTGGGACTCGATTAGTACACTAGCTGGTGAAGTTGA 973
Query 776 AAACCCAAACCATACGCTTCCAAAGGCGTTGTATTACGGTGTGATCTTAGTTGCTTGTTC 835
|||||| |||||||| ||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 974 AAACCCCAACCATACACTTCCAAAGGCTTTGTTTTATGGTGTGATCTTAGTTGCTTGTTC 1033
Query 836 TTACATCTTCCCTCTTTTGGCTGGAATCGGGGCAATCCCGCTAGAGCGTGAGAAATGGAC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 TTACATCTTCCCTCTTTTGGCTGGAATCGGGGCAATCCCGCTAGAGCGTGAGAAATGGAC 1093
Query 896 AGATGGGTATTTTTCTGACGTGGCCAAAGCTCTCGGTGGAGCGTGGTTGAGATGGTGGGT 955
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1094 AGATGGGTATTTTTCTGATGTGGCCAAAGCTCTTGGTGGAGCGTGGTTGAGATGGTGGGT 1153
Query 956 TCAAGCAGCTGCAGCCACATCAAACATGGGAATGTTTTTAGCCGAGATGAGTAGTGACTC 1015
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1154 TCAAGCGGCTGCAGCTACATCAAACATGGGAATGTTTATAGCCGAGATGAGTAGTGACTC 1213
Query 1016 TTTTCAGCTTCTCGGAATGGCTGAGCGCGGTATGCTTCCCGAGTTCTTCGCCAAAAGGTC 1075
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1214 TTTTCAGCTTCTCGGAATGGCTGAGCGCGGTATGCTTCCCGAGTTCTTTGCCAAAAGGTC 1273
Query 1076 ACGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCTTCAGGCGTTGTGCTCTTGTC 1135
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1274 ACGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCGTCAGGTGTTGTTCTCTTGTC 1333
Query 1136 TTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAGAACTTACTCTACTGCGTTGGAATGAT 1195
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1334 TTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAGAACTTACTCTACTGCGTTGGTATGAT 1393
Query 1196 CTTGGAGTTTATAGCATTTGTTAGAATGAGAATGAAACACCCGGCTGCATCAAGACCGTA 1255
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1394 CTTAGAGTTTATAGCGTTTGTTAGAATGAGAATGAAACACCCTGCTGCATCAAGACCGTA 1453
Query 1256 CAAAATACCTATTGGAACCACAGGTTCGATCCTCATGTGTGTCCCTCCAACCATACTTAT 1315
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 1454 CAAGATACCTATTGGAACCACAGGTTCGATCCTCATGTGTATTCCTCCAACCATACTGAT 1513
Query 1316 CTTTGCTGTTGTAGCACTCTCGTCTCTTAAAGTAGCTGCAGTGAGCATTGTGATGATGAT 1375
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 CTGTGCTGTTGTAGCACTCTCGTCTCTTAAAGTAGCTGCAGTGAGCATTGTGATGATGAT 1573
Query 1376 CATTGGTTTCGTAATGCATCCTTGT-CTGAACCATATGGATCGAAAGAGATGGCTCAAGT 1434
|||||||||| | || ||||||| | ||||||||||||||||||||||||||| |||| |
Sbjct 1574 CATTGGTTTCCTGATACATCCTT-TACTGAACCATATGGATCGAAAGAGATGGGTCAAAT 1632
Query 1435 TCTCCATCAGTTCTGACTTACCGGACCTTCAGCAGGAGACTCGGGAGCACGAAGAAACTC 1494
||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 1633 TCTCCATCAGTTCTGACTTACCGGACCTTCAACAGCAGACTCGGGAATACGAAGAAACTC 1692
Query 1495 TAATACGTTA-GCAGTGTTCTTTGTTCTTT 1523
|||||||||| | | ||| ||| ||| |||
Sbjct 1693 TAATACGTTAAGAA-TGTCCTTAGTTATTT 1721
> AT1G31820.1 | Symbols: | Amino acid permease family protein
| chr1:11416451-11418279 REVERSE LENGTH=1728
Length=1728
Score = 1162 bits (629), Expect = 0.0
Identities = 1110/1339 (83%), Gaps = 46/1339 (3%)
Strand=Plus/Plus
Query 158 GAAAGTTTCGATGTTGCCACTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTT 217
||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 141 GAAAGTTTCAATGTTACCACTCGTTTTCCTCATATTCTACGAAGTCTCAGGAGGTCCTTT 200
Query 218 TGGTG-TAG-AGGATAGTGTGAATGCTGCTGGACCATTGTTAGCTCTTTTAGGGTTTGTG 275
|||| | | ||| |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 201 CGGTGCT-GAAGG-TAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTAGGGTTTGTG 258
Query 276 ATCTTTCCTTTCATTTGGAGTATTCCTGAGGCTCTGATCACTGCAGAGATGGGCACAATG 335
||||| |||||||||||| |||| |||||||| || |||||||| |||||| | ||||||
Sbjct 259 ATCTTCCCTTTCATTTGGTGTATCCCTGAGGCACTAATCACTGCGGAGATGAGTACAATG 318
Query 336 TTTCCCGAGAAT-GGCGGTTATGTTGTGTGGGTCTCCTCTGCTTTGGGG-CCATTTTGGG 393
||||| | || ||||||| |||||| |||||||||||||||||||| || |||||||
Sbjct 319 TTTCCA-ATAAACGGCGGTTTTGTTGTTTGGGTCTCCTCTGCTTTGGGAACC-TTTTGGG 376
Query 394 GGTTTCA-GCAAGGTTGGATGAAATGGCTGAGTGGTGTTATTGATAACGCTTTGTATCCT 452
||||||| | | ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 377 GGTTTCAAGTA-GGTTGGATGAAATGGCTTTGCGGTGTTATTGATAACGCTTTGTATCCT 435
Query 453 GTTCTGTTTCTT-GATTATTTGAAATCTG-GAATCCCGGCTCTGGGTAGC-GGTTTGCCG 509
||||| |||| | ||||||||||| || | | |||||||| | | || | ||||||||
Sbjct 436 GTTCT-TTTCCTCGATTATTTGAAGTCCGCGG-TCCCGGCTTTAGCTA-CTGGTTTGCCA 492
Query 510 AGAGTTGC-TGCGATCTTGGTGTTGACTATTTTG-TTGACGTATCTGAA-CTACAGGGGA 566
|||||||| | |||||||| | |||||| | ||| || || || || || ||| || |||
Sbjct 493 AGAGTTGCAT-CGATCTTGATCTTGACTCTATTGCTT-ACTTA-CTTAAACTATAGAGGA 549
Query 567 CTAACTATAGTTGGTTGGGTTGCTGTGCTTATGGGAGTTTTCTCGATCCTTCCGTTTGCT 626
||||| || ||||||||| |||||| |||||||||||||||| || ||||||||||||
Sbjct 550 CTAACCATTGTTGGTTGGACCGCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCT 609
Query 627 GTGATGGGTTTGATTTCGATTCCGCAGTTAGAGCCTTCAAGATGGCTTGTAATGGACTTA 686
|| ||| || || |||| ||||||||| | |||||||| ||||||||||| ||||| |||
Sbjct 610 GTAATGAGTCTGGTTTCTATTCCGCAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTA 669
Query 687 GGGAATGTGAACTGGAATTTGTATCTAAACACGCTTTTCTGGAATCTAAACTATTGGGAC 746
|| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 670 GGAAATGTCAACTGGAACTTGTATCTCAACACGCTTTTATGGAATCTGAACTACTGGGAT 729
Query 747 TCGATCAGCACACTAGCTGGTGAAGTCGAAAACCCAAACCATACGCTTCCAAAGGCGTTG 806
||| | || ||||| || |||||||| | ||| || || | || ||||| ||||| |||
Sbjct 730 TCGGTTAGTACACTGGCCGGTGAAGTGGCAAATCCGAAGAAAACACTTCCTAAGGCTTTG 789
Query 807 TATTACGGTGTGATCTTAGTTGCT-TGTTCTTACATCTTCCCTCTTTTGGCTGGAATCGG 865
| ||||||||| ||||| || ||| | ||| || || ||||||||||| |||||| |||
Sbjct 790 TGTTACGGTGTTATCTTTGTCGCTCT-TTCGAACTTCCTCCCTCTTTTGTCTGGAACCGG 848
Query 866 GGCAATCCCGCTAGAGCGTGAGAAATGGACAGATGGGTATTTTTCTGACGTGGCCAAAGC 925
||| || ||| | || |||||| |||||||||||| ||| | |||| || || |||||
Sbjct 849 GGCTATACCGTTGGATCGTGAGTTATGGACAGATGGATATCTAGCTGAGGTTGCTAAAGC 908
Query 926 TC-TCGGTGGAGCG-TGGTTGAGA-TGGTGGGTTCAAGCAGCTGCAGCCACATCAAACAT 982
| ||||||||| | ||||| | | | |||||||||||| |||||||| |||||||||||
Sbjct 909 -CATCGGTGGAG-GATGGTT-ACAATTGTGGGTTCAAGCGGCTGCAGCTACATCAAACAT 965
Query 983 GGGAATGTTTTTAGCCGAGATGAGTAGTGACTCTTTTCAGCTTCTCGGAATGGCTGAGCG 1042
|||||||||||||||||| ||||||||||| || |||||||| || ||||||||||| |
Sbjct 966 GGGAATGTTTTTAGCCGAAATGAGTAGTGATTCCTTTCAGCTACTTGGAATGGCTGAACT 1025
Query 1043 CGGTATGCTTCCCGAGTTCTTCGC-CAAAAGGTCACGTTACGGGACACCTTTACTAGGGA 1101
|||||| ||||||||| |||| || |||| | || || ||||||||||||||||||||||
Sbjct 1026 CGGTATACTTCCCGAGATCTTTGCGCAAA-GATCTCGCTACGGGACACCTTTACTAGGGA 1084
Query 1102 TTCTGTTTTCAGCTTCAGGCGTTGTGCTCTTGTCTTGGCT-AAGCTTTCAAGAGATTGTA 1160
||||||||||||| ||||| ||| | |||||||| || | |||||||||||||||| ||
Sbjct 1085 TTCTGTTTTCAGCCTCAGGTGTTTTACTCTTGTCA-GGATTAAGCTTTCAAGAGATTATA 1143
Query 1161 GCTGCAGAGAACTTACTCTACTGCGTTGGAATGATCTTGGAGTTTATAGCATTTGTTAGA 1220
||||||||||| || || ||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 1144 GCTGCAGAGAATTTGCTTTACTGTGGTGGAATGATTTTGGAGTTTATAGCATTTGTTAGA 1203
Query 1221 ATGAG-AATGAAACACCCGGCTGCATCAAGACCGTACAAAATACCTATTGGAACCACAGG 1279
|||| || |||||| ||||||||||| |||||||| || |||||| |||||||| ||
Sbjct 1204 CTGAGGAA-GAAACATCCGGCTGCATCGAGACCGTATAAGATACCTGTTGGAACCGTTGG 1262
Query 1280 TTCGATCCTCATGTGTGTCCCTCCAACCATACT--TATCTTTGCTGTTGTAGCACTCTCG 1337
|||||| || || ||||||||||| | |||| ||| |||| ||| | | || ||
Sbjct 1263 TTCGATTCTGATATGTGTCCCTCCGATTGTACTGATATGTTTG--GTTATTGTTCTATC- 1319
Query 1338 T-CTCTTAAAGTAGCTGCA-GTGAGCATTGTGATGATGATCATTGGTTTCGTAATGCATC 1395
| || ||||||| ||| | |||||| |||||||| || ||||||||||| | ||| | |
Sbjct 1320 TACTATTAAAGTGGCT-CTTGTGAGCTTTGTGATGGTGGTCATTGGTTTCTTGATGAAAC 1378
Query 1396 CTTGTCTGAACCATATGGATCGAAAGAGATGGCTCAAGTTCTCCA-TCAGTTCTGACTTA 1454
||||| | || ||||||||| |||||| |||| |||| ||||| | || ||||||| ||
Sbjct 1379 CTTGTTTAAATCATATGGATGGAAAGAAATGGGTCAAATTCTC-AGTCTGTTCTGATTTG 1437
Query 1455 CCGGACCTTCAGCAGGAGA 1473
| || ||||| ||||||
Sbjct 1438 GCAGAGTTTCAGAAGGAGA 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75300817500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5